Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000354.1

Orthogroup ID

OG0002651

Physical Location & Seq

Genomic Coordinates Reverse (-)

5889 .. 6221

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000354.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgttggctgttgttgaagctgcgcagagtcacaggcattctgtgagtgacgtgtccgtttcggatgagtccacgtttgattcttgtgggtcggatagttgttctttggagggtgtggatttggagagtggggttttggagctgaagaataaggtggtggtgcatttgagtaaggttgagagaatttgcagaatttgccacttgggttttgagggtggtgggttggactcttctgggcttccaattgacttgggatgttcttgcaagggtgatttgggtgctgctcataagcaatgtgctgagacttggttcaagatcaagggtgatacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

110

Amino Acids

11.59

Weight (kDa)

5.04

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29530 AT2G29530 AT2G29530
fragaria_vesca	FvH4_3g37430 FvH4_3g37430 FvH4_3g37440
malus_domestica	MD02G1203300.v1.1 MD02G1278800.v1.1 MD03G1080600.v1.1 MD03G1080700.v1.1 MD11G1085200.v1.1
prunus_persica	Prupe.6G065100_v2.0.a1 Prupe.6G065200_v2.0.a1
pyrus_communis	pycom03g06430 pycom03g06440 pycom11g07370
rosa_chinensis	RchiOBHm_Chr5g0067321 RchiOBHm_Chr5g0067331
rosa_laevigata	RLG00000018721 RLG00000035927
rosa_multiflora	Rmu_sc0000015.1_g000001 Rmu_sc0024489.1_g000001 Rmu_sc0034065.1_g000001 Rmu_ssc0000354.1_g000002
rosa_roxburghii	Rroxscaffold_1G00013750
rosa_rugosa	Rorug05G0384200 Rorug05G0384300 Rorug05G0384400
rosa_samantha	Rh5AG443600 Rh5AG443700 Rh5BG460600 Rh5BG460700 Rh5CG482900 Rh5CG483000 Rh5DG475700 Rh5DG475800 Rh6DG258900
rosa_wichuraiana	Rw2G027490 Rw5G041430 Rw5G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
AcsI	RAATTY	2 cut(s)	183, 192
AcuI	CTGAAG	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	2 cut(s)	17, 313
AjiI	CACGTC	1 cut(s)	52
AluBI	AGCT	2 cut(s)	20, 142
AluI	AGCT	2 cut(s)	20, 142
Alw26I	GTCTC	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	20, 281
ApoI	RAATTY	2 cut(s)	183, 192
AspLEI	GCGC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	7, 268
BcoDI	GTCTC	1 cut(s)	296
BisI	GCNGC	2 cut(s)	21, 282
BlsI	GCNGC	2 cut(s)	22, 283
BmgBI	CACGTC	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	299
BseGI	GGATG	2 cut(s)	70, 260
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	7, 268
BsmAI	GTCTC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	299
BssMI	GATC	1 cut(s)	315
Bst6I	CTCTTC	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	195
BstBAI	YACGTR	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	2 cut(s)	70, 260
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	1 cut(s)	318
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	1 cut(s)	315
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	7, 268
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	70, 260
CfoI	GCGC	1 cut(s)	25
CviJI	RGCY	4 cut(s)	8, 20, 142, 238
CviKI_1	RGCY	4 cut(s)	8, 20, 142, 238
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	164
FaiI	YATR	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	21, 282
FokI	GGATG	2 cut(s)	77, 267
Fsp4HI	GCNGC	2 cut(s)	21, 282
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	2 cut(s)	21, 282
HhaI	GCGC	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	4 cut(s)	28, 68, 80, 227
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	2 cut(s)	64, 94
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	1 cut(s)	72
HpyCH4IV	ACGT	3 cut(s)	51, 74, 329
HpyCH4V	TGCA	3 cut(s)	163, 189, 264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	3 cut(s)	51, 74, 329
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	2 cut(s)	19, 219
Lsp1109I	GCAGC	2 cut(s)	7, 268
MaeII	ACGT	3 cut(s)	51, 74, 329
MaeIII	GTNAC	2 cut(s)	29, 47
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	2 cut(s)	157, 222
MfeI	CAATTG	1 cut(s)	243
MluCI	AATT	3 cut(s)	183, 192, 243
MlyI	GAGTC	3 cut(s)	37, 77, 221
MmeI	TCCRAC	2 cut(s)	72, 204
MnlI	CCTC	2 cut(s)	103, 205
MunI	CAATTG	1 cut(s)	243
Mva1269I	GAATGC	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	195
NdeII	GATC	1 cut(s)	315
NmuCI	GTSAC	2 cut(s)	29, 47
NsbI	TGCGCA	1 cut(s)	24
PctI	GAATGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	22, 283
PleI	GAGTC	3 cut(s)	36, 76, 221
PpsI	GAGTC	3 cut(s)	36, 76, 221
Ppu21I	YACGTR	1 cut(s)	330
SatI	GCNGC	2 cut(s)	21, 282
Sau3AI	GATC	1 cut(s)	315
SchI	GAGTC	3 cut(s)	37, 77, 221
SetI	ASST	7 cut(s)	22, 54, 77, 144, 156, 177, 332
Sse9I	AATT	3 cut(s)	183, 192, 243
TaiI	ACGT	3 cut(s)	54, 77, 332
TasI	AATT	3 cut(s)	183, 192, 243
TfiI	GAWTC	1 cut(s)	80
TseFI	GTSAC	2 cut(s)	29, 47
TseI	GCWGC	2 cut(s)	20, 281
Tsp45I	GTSAC	2 cut(s)	29, 47
TspGWI	ACGGA	1 cut(s)	46
XapI	RAATTY	2 cut(s)	183, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.