Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002651

Physical Location & Seq

Genomic Coordinates Reverse (-)

7179491 .. 7181568

Gene Structure 2078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1085200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGCTGCCCCCAACAATGCGCCGACGGTTTTGGACAAGGAACAGATTTTTGGTATGGCAGAAAAGGAGATGGAATACAGGGTTGAGTTGTTCAACAAGCTCACCCATACATGTTTCAACAAGTGCGTTGAGAAGAAGTACAAGGAGTCTGAGCTAAATATGGGTGAAAACAGTTGCATTGATCGATGTGTCTCAAAATACTGGCATGTGACTAATCTAGTCGGGCAGCTGCTTGGTTCTGGTCGGCCTCCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

86

Amino Acids

9.74

Weight (kDa)

6.71

Isoelectric Point (pI)

26.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	18 - 78	2.4e-22	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29530 AT2G29530 AT2G29530
fragaria_vesca	FvH4_3g37430 FvH4_3g37430 FvH4_3g37440
malus_domestica	MD02G1203300.v1.1 MD02G1278800.v1.1 MD03G1080600.v1.1 MD03G1080700.v1.1 MD11G1085200.v1.1
prunus_persica	Prupe.6G065100_v2.0.a1 Prupe.6G065200_v2.0.a1
pyrus_communis	pycom03g06430 pycom03g06440 pycom11g07370
rosa_chinensis	RchiOBHm_Chr5g0067321 RchiOBHm_Chr5g0067331
rosa_laevigata	RLG00000018721 RLG00000035927
rosa_multiflora	Rmu_sc0000015.1_g000001 Rmu_sc0024489.1_g000001 Rmu_sc0034065.1_g000001 Rmu_ssc0000354.1_g000002
rosa_roxburghii	Rroxscaffold_1G00013750
rosa_rugosa	Rorug05G0384200 Rorug05G0384300 Rorug05G0384400
rosa_samantha	Rh5AG443600 Rh5AG443700 Rh5BG460600 Rh5BG460700 Rh5CG482900 Rh5CG483000 Rh5DG475700 Rh5DG475800 Rh6DG258900
rosa_wichuraiana	Rw2G027490 Rw5G041430 Rw5G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	140
AflIII	ACRYGT	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	94, 118
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	3 cut(s)	100, 154, 229
AluI	AGCT	3 cut(s)	100, 154, 229
Alw26I	GTCTC	1 cut(s)	196
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	3 cut(s)	5, 226, 229
AspLEI	GCGC	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	94, 176
BbvI	GCAGC	2 cut(s)	216, 238
BccI	CCATC	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	3 cut(s)	6, 227, 230
BlsI	GCNGC	3 cut(s)	7, 228, 231
Bsa29I	ATCGAT	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	206
BseCI	ATCGAT	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	216, 238
BshFI	GGCC	1 cut(s)	247
BshVI	ATCGAT	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	181
BspANI	GGCC	1 cut(s)	247
BspCNI	CTCAG	1 cut(s)	142
BspDI	ATCGAT	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	206
BssMI	GATC	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	28, 173
BstDEI	CTNAG	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	181
BstNSI	RCATGY	2 cut(s)	114, 209
BstV1I	GCAGC	2 cut(s)	216, 238
Bsu15I	ATCGAT	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	247
BsuTUI	ATCGAT	1 cut(s)	184
CfoI	GCGC	1 cut(s)	22
ClaI	ATCGAT	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	2 cut(s)	111, 206
CviJI	RGCY	5 cut(s)	5, 100, 154, 229, 247
CviKI_1	RGCY	5 cut(s)	5, 100, 154, 229, 247
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
FaeI	CATG	2 cut(s)	114, 209
FaiI	YATR	6 cut(s)	56, 108, 112, 161, 207, 254
FatI	CATG	2 cut(s)	110, 205
Fnu4HI	GCNGC	3 cut(s)	6, 227, 230
Fsp4HI	GCNGC	3 cut(s)	6, 227, 230
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	3 cut(s)	6, 227, 230
HaeIII	GGCC	1 cut(s)	247
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	2 cut(s)	114, 209
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	1 cut(s)	146
HphI	GGTGA	2 cut(s)	94, 176
Hpy188I	TCNGA	1 cut(s)	151
Hpy99I	CGWCG	1 cut(s)	28
HpyCH4III	ACNGT	2 cut(s)	28, 173
HpyCH4V	TGCA	1 cut(s)	177
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	114, 209
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	1 cut(s)	181
LpnPI	CCDG	3 cut(s)	64, 187, 225
Lsp1109I	GCAGC	2 cut(s)	216, 238
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	1 cut(s)	145
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	229
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	114, 209
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	2 cut(s)	114, 209
PciI	ACATGT	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	7, 228, 231
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PscI	ACATGT	1 cut(s)	110
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SatI	GCNGC	3 cut(s)	6, 227, 230
Sau3AI	GATC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	155
SetI	ASST	3 cut(s)	102, 156, 231
SspMI	CTAG	1 cut(s)	218
TaaI	ACNGT	2 cut(s)	28, 173
TaqI	TCGA	1 cut(s)	184
TatI	WGTACW	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	3 cut(s)	5, 226, 229
Tsp45I	GTSAC	1 cut(s)	208
XceI	RCATGY	2 cut(s)	114, 209
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.