Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002651

Physical Location & Seq

Genomic Coordinates Reverse (-)

73586207 .. 73590967

Gene Structure 4761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035927

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGATGTTGGCTGTTGTTGAAGCTGCGCAGAGTCGCAGGCATTCGGTGAGTGACGTGTCCGTTTCGGATGAGTCCACGTTTGATTCTTGTGGGTCGGATTGTTGTTCTTTGGAGGGTGTGGATTTGGAGAGTGGGGTTTTGGAGCTGAAGAATAAGGTGGTGGTGCATTTGAGTAAGGTTGAGAGAATTTGCAGAATTTGCCACTTGGGTTTTGAAGGTGGTGGGTTGGACTCTTCTGGGCTTCCAATTGACTTGGGTTGTTCTTGCAAAGGTGATTTGGGTGCTGCTCATAAGCAATGTGCTGAGACTTGGTTCAAGATCAAGGGTGATACAATCTGCGAGATCTGTGGTGTCGTTGCATTTAACATAGTTGGTGAGCAGATCAACGAGGCAAATGGAGCCATCGCCCCAACATCCCCTTCAACACCACCAGCAGCATCTGTGATCATGGTGGAAACCCAAACCATGTGGCATGGCCGCCGCATTATGAATTTCCTGCTTGCTTGCATGATCCTTGCCTTTGTGACCCCTTCATTGATTTCAAAGGGTCCAATGGCTGCTAACAATGTTCCAGTGGGTTTGGACAAGGAACAGATTTTTGGTATGGCAGAGAAGGAGATGGAGTACAGGGTTGAGTTATTTAACAAGCTTACCCACACATGCTTCAACAAGTGTGTTGAGAAGAAGTACAAGGAGTCTGAGCTAAATATGGGTGAAAACAGTTGCATTGATCGTTGTGTCTCAAAGTACTGGCAGGTGACTAATCTAGTTGGCCAGCTGCTTGGTGCTGGTAGGCCTCCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

269

Amino Acids

29.06

Weight (kDa)

5.44

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	64 - 116	5.9e-11	RING-variant domain
zf-Tim10_DDP	PF02953	201 - 261	2.2e-21	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29530 AT2G29530 AT2G29530
fragaria_vesca	FvH4_3g37430 FvH4_3g37430 FvH4_3g37440
malus_domestica	MD02G1203300.v1.1 MD02G1278800.v1.1 MD03G1080600.v1.1 MD03G1080700.v1.1 MD11G1085200.v1.1
prunus_persica	Prupe.6G065100_v2.0.a1 Prupe.6G065200_v2.0.a1
pyrus_communis	pycom03g06430 pycom03g06440 pycom11g07370
rosa_chinensis	RchiOBHm_Chr5g0067321 RchiOBHm_Chr5g0067331
rosa_laevigata	RLG00000018721 RLG00000035927
rosa_multiflora	Rmu_sc0000015.1_g000001 Rmu_sc0024489.1_g000001 Rmu_sc0034065.1_g000001 Rmu_ssc0000354.1_g000002
rosa_roxburghii	Rroxscaffold_1G00013750
rosa_rugosa	Rorug05G0384200 Rorug05G0384300 Rorug05G0384400
rosa_samantha	Rh5AG443600 Rh5AG443700 Rh5BG460600 Rh5BG460700 Rh5CG482900 Rh5CG483000 Rh5DG475700 Rh5DG475800 Rh6DG258900
rosa_wichuraiana	Rw2G027490 Rw5G041430 Rw5G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	745
Acc16I	TGCGCA	1 cut(s)	27
Acc36I	ACCTGC	1 cut(s)	745
AciI	CCGC	2 cut(s)	478, 481
AclWI	GGATC	1 cut(s)	505
AcoI	YGGCCR	2 cut(s)	475, 772
AcsI	RAATTY	3 cut(s)	186, 195, 490
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	3 cut(s)	626, 689, 749
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	6 cut(s)	20, 215, 316, 423, 543, 667
AjiI	CACGTC	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	4 cut(s)	403, 435, 582, 614
AluBI	AGCT	5 cut(s)	23, 145, 649, 703, 778
AluI	AGCT	5 cut(s)	23, 145, 649, 703, 778
Alw26I	GTCTC	2 cut(s)	299, 745
AlwI	GGATC	1 cut(s)	505
AlwNI	CAGNNNCTG	1 cut(s)	440
AoxI	GGCC	3 cut(s)	475, 772, 794
ApeKI	GCWGC	5 cut(s)	23, 284, 434, 557, 778
ApoI	RAATTY	3 cut(s)	186, 195, 490
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	548
AsuHPI	GGTGA	6 cut(s)	58, 284, 338, 386, 725, 769
AvaII	GGWCC	1 cut(s)	548
BalI	TGGCCA	1 cut(s)	774
BbvI	GCAGC	5 cut(s)	10, 271, 446, 544, 765
BccI	CCATC	2 cut(s)	410, 613
BclI	TGATCA	1 cut(s)	444
BcoDI	GTCTC	2 cut(s)	299, 745
BfaI	CTAG	1 cut(s)	767
BfuAI	ACCTGC	1 cut(s)	745
BglII	AGATCT	1 cut(s)	342
BisI	GCNGC	7 cut(s)	24, 285, 435, 478, 481, 558, 779
BlsI	GCNGC	7 cut(s)	25, 286, 436, 479, 482, 559, 780
BmcAI	AGTACT	1 cut(s)	749
Bme18I	GGWCC	1 cut(s)	548
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	2 cut(s)	400, 549
BmsI	GCATC	1 cut(s)	446
BsaXI	ACNNNNNCTCC	2 cut(s)	608, 638
Bse1I	ACTGG	2 cut(s)	572, 755
Bse3DI	GCAATG	1 cut(s)	302
BseGI	GGATG	2 cut(s)	73, 413
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	294, 690
BseNI	ACTGG	2 cut(s)	572, 755
BseXI	GCAGC	5 cut(s)	10, 271, 446, 544, 765
BshFI	GGCC	3 cut(s)	477, 774, 796
BsmAI	GTCTC	2 cut(s)	299, 745
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	3 cut(s)	477, 774, 796
Bsp143I	GATC	6 cut(s)	318, 342, 381, 444, 510, 730
BspACI	CCGC	2 cut(s)	478, 481
BspANI	GGCC	3 cut(s)	477, 774, 796
BspCNI	CTCAG	2 cut(s)	295, 691
BspLI	GGNNCC	2 cut(s)	400, 549
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	572, 755
BssMI	GATC	6 cut(s)	318, 342, 381, 444, 510, 730
Bst4CI	ACNGT	1 cut(s)	722
Bst6I	CTCTTC	1 cut(s)	238
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstC8I	GCNNGC	4 cut(s)	38, 501, 505, 776
BstDEI	CTNAG	2 cut(s)	303, 699
BstF5I	GGATG	2 cut(s)	73, 413
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	6 cut(s)	321, 345, 384, 447, 513, 733
BstMAI	GTCTC	2 cut(s)	299, 745
BstMBI	GATC	6 cut(s)	318, 342, 381, 444, 510, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 398
BstNSI	RCATGY	1 cut(s)	663
BstV1I	GCAGC	5 cut(s)	10, 271, 446, 544, 765
BstX2I	RGATCY	1 cut(s)	342
BstXI	CCANNNNNNTGG	1 cut(s)	782
BstYI	RGATCY	1 cut(s)	342
BsuRI	GGCC	3 cut(s)	477, 774, 796
BtgZI	GCGATG	1 cut(s)	388
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	73, 413
BtsIMutI	CAGTG	1 cut(s)	579
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	4 cut(s)	38, 501, 505, 776
CaiI	CAGNNNCTG	1 cut(s)	440
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	548
Csp6I	GTAC	3 cut(s)	625, 688, 748
CspCI	CAANNNNNGTGG	2 cut(s)	449, 484
CviAII	CATG	5 cut(s)	448, 466, 473, 508, 660
CviQI	GTAC	3 cut(s)	625, 688, 748
DdeI	CTNAG	2 cut(s)	303, 699
DpnI	GATC	6 cut(s)	320, 344, 383, 446, 512, 732
DpnII	GATC	6 cut(s)	318, 342, 381, 444, 510, 730
EaeI	YGGCCR	2 cut(s)	475, 772
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
Eco147I	AGGCCT	1 cut(s)	796
Eco47I	GGWCC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	167
FaeI	CATG	5 cut(s)	451, 469, 476, 511, 663
FatI	CATG	5 cut(s)	447, 465, 472, 507, 659
FbaI	TGATCA	1 cut(s)	444
Fnu4HI	GCNGC	7 cut(s)	24, 285, 435, 478, 481, 558, 779
FokI	GGATG	2 cut(s)	80, 400
Fsp4HI	GCNGC	7 cut(s)	24, 285, 435, 478, 481, 558, 779
FspBI	CTAG	1 cut(s)	767
FspI	TGCGCA	1 cut(s)	27
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	7 cut(s)	24, 285, 435, 478, 481, 558, 779
HaeIII	GGCC	3 cut(s)	477, 774, 796
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	5 cut(s)	451, 469, 476, 511, 663
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	5 cut(s)	31, 71, 83, 230, 695
HphI	GGTGA	6 cut(s)	58, 284, 338, 386, 725, 769
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	3 cut(s)	67, 97, 700
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	4 cut(s)	209, 429, 540, 607
HpyCH4III	ACNGT	1 cut(s)	722
HpyCH4IV	ACGT	2 cut(s)	54, 77
HpyCH4V	TGCA	6 cut(s)	166, 192, 267, 359, 507, 726
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 398
HpyF3I	CTNAG	2 cut(s)	303, 699
HpySE526I	ACGT	2 cut(s)	54, 77
Hsp92II	CATG	5 cut(s)	451, 469, 476, 511, 663
HspAI	GCGC	1 cut(s)	26
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	6 cut(s)	318, 342, 381, 444, 510, 730
LmnI	GCTCC	2 cut(s)	142, 398
Lsp1109I	GCAGC	5 cut(s)	10, 271, 446, 544, 765
LweI	GCATC	1 cut(s)	446
MaeI	CTAG	1 cut(s)	767
MaeII	ACGT	2 cut(s)	54, 77
MaeIII	GTNAC	3 cut(s)	50, 523, 757
MalI	GATC	6 cut(s)	320, 344, 383, 446, 512, 732
MboI	GATC	6 cut(s)	318, 342, 381, 444, 510, 730
MboII	GAAGA	3 cut(s)	160, 225, 694
MfeI	CAATTG	1 cut(s)	246
MflI	RGATCY	1 cut(s)	342
MlsI	TGGCCA	1 cut(s)	774
MluCI	AATT	4 cut(s)	186, 195, 246, 490
MluNI	TGGCCA	1 cut(s)	774
MlyI	GAGTC	4 cut(s)	40, 80, 224, 704
MmeI	TCCRAC	2 cut(s)	75, 207
MnlI	CCTC	3 cut(s)	106, 382, 807
Mox20I	TGGCCA	1 cut(s)	774
MscI	TGGCCA	1 cut(s)	774
MseI	TTAA	2 cut(s)	363, 642
Msp20I	TGGCCA	1 cut(s)	774
MspA1I	CMGCKG	1 cut(s)	778
MunI	CAATTG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	40
MwoI	GCNNNNNNNGC	2 cut(s)	198, 398
NdeII	GATC	6 cut(s)	318, 342, 381, 444, 510, 730
NlaIII	CATG	5 cut(s)	451, 469, 476, 511, 663
NlaIV	GGNNCC	2 cut(s)	400, 549
NmuCI	GTSAC	3 cut(s)	50, 523, 757
NsbI	TGCGCA	1 cut(s)	27
NspI	RCATGY	1 cut(s)	663
PaqCI	CACCTGC	1 cut(s)	745
PceI	AGGCCT	1 cut(s)	796
PctI	GAATGC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	7 cut(s)	25, 286, 436, 479, 482, 559, 780
PleI	GAGTC	4 cut(s)	39, 79, 224, 703
PpsI	GAGTC	4 cut(s)	39, 79, 224, 703
PspN4I	GGNNCC	2 cut(s)	400, 549
PspPI	GGNCC	1 cut(s)	548
PstNI	CAGNNNCTG	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	342
PvuII	CAGCTG	1 cut(s)	778
RsaI	GTAC	3 cut(s)	626, 689, 749
RsaNI	GTAC	3 cut(s)	625, 688, 748
SaqAI	TTAA	2 cut(s)	363, 642
SatI	GCNGC	7 cut(s)	24, 285, 435, 478, 481, 558, 779
Sau3AI	GATC	6 cut(s)	318, 342, 381, 444, 510, 730
Sau96I	GGNCC	1 cut(s)	548
ScaI	AGTACT	1 cut(s)	749
SchI	GAGTC	4 cut(s)	40, 80, 224, 704
SfaNI	GCATC	1 cut(s)	446
SinI	GGWCC	1 cut(s)	548
Sse9I	AATT	4 cut(s)	186, 195, 246, 490
SseBI	AGGCCT	1 cut(s)	796
SsiI	CCGC	2 cut(s)	478, 481
SspMI	CTAG	1 cut(s)	767
StuI	AGGCCT	1 cut(s)	796
TaaI	ACNGT	1 cut(s)	722
TaiI	ACGT	2 cut(s)	57, 80
TasI	AATT	4 cut(s)	186, 195, 246, 490
TatI	WGTACW	3 cut(s)	624, 687, 747
TauI	GCSGC	2 cut(s)	480, 483
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	363, 642
Tru9I	TTAA	2 cut(s)	363, 642
TscAI	CASTG	1 cut(s)	579
TseFI	GTSAC	3 cut(s)	50, 523, 757
TseI	GCWGC	5 cut(s)	23, 284, 434, 557, 778
Tsp45I	GTSAC	3 cut(s)	50, 523, 757
TspDTI	ATGAA	2 cut(s)	503, 522
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	1 cut(s)	579
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	3 cut(s)	186, 195, 490
XceI	RCATGY	1 cut(s)	663
XspI	CTAG	1 cut(s)	767
ZrmI	AGTACT	1 cut(s)	749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.