Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003217

Physical Location & Seq

Genomic Coordinates Reverse (-)

13157089 .. 13160886

Gene Structure 3798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTTGGCGTCGGTACGGGTGAATCAGCTGCAAAGACTTCTTCTCTCTGCTCGTCGATTATCTTCTTCACCAATAATACCTCCGTCGCGTTTACTTCACCAGCGGCTATTCTCGACTTCAGACACTGATGCTTCGGCTGCATCTTTTTCTTCTTCGCATCCGAAAATACAAACGCTTGAAGGCAAAGCTTCTAATAAAAGCCGAAGCACATCGTCAACAACATCTTTGAATGAAGATGAACTTGCCAAATTCTCTGCCATTGCTGATACCTGGTGGCATTCTGAAGGACCCTTTAAACCGTTGCATCAAATGAATCCAACTCGGTTGGCTTTCATCCGCTCGACCTTATGCAGGCACTTCAGTAAGGATCCGAGTTCTGCTAAGCCTTTTGAAGGACTGAAATTTATCGATATAGGTTGCGGTGGCGGACTACTTTCTGAGCCTCTAGCACGGATGGGAGCAACTGTCACAGGAGTTGATGCTGTTGATAAGAATGTCAAAATTGCTCGTCTTCACGCTGATATGGATCCAGTGACTTCAACGATTGAATACTTATGTACTACAGCAGAAAAGCTAGCGGATGAAGGCAGGAAGTTTGATGCTGTTCTTTCTTTAGAGGTCATCGAGCATGTAGCAAACCCTGCAGAGTTCTGTAAGTCGTTGTCAGCATTGACTATCCCCAACGGGGCTACAGTACTTTCTACAATCAATCGCACTATGCGAGCATATGCATCAACCATTGTTGGAGCAGAGTACATTCTACGTTGGCTTCCTAAAGGCACACACCAGTGGTCAAGTTTTGTAACTCCTGAAGAAATGAGTATGATATTACAACGTGCTTCAGTCGATGTGAAAGAGATAGCTGGATTTGTGTACAACCCAATAACAGGAAGATGGTTATTGTCAGATGATATTAGTGTCAACTATATTGCTTATGGGACGAAAAGGAAGGATCTTGGAGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

322

Amino Acids

35.33

Weight (kDa)

8.6

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	126 - 280	7.5e-18	Methyltransferase domain
Methyltransf_31	PF13847	131 - 266	5.7e-12	Methyltransferase domain
CMAS	PF02353	131 - 254	9.1e-08	Mycolic acid cyclopropane synthetase
Methyltransf_11	PF08241	136 - 232	1e-18	Methyltransferase domain
Methyltransf_25	PF13649	136 - 229	5.3e-14	Methyltransferase domain
Methyltransf_12	PF08242	136 - 229	5.3e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30920 AT2G30920
fragaria_vesca	FvH4_6g37760
malus_domestica	MD09G1156300.v1.1 MD17G1142800.v1.1
prunus_persica	Prupe.3G169300_v2.0.a1
pyrus_communis	pycom17g13580
rosa_chinensis	RchiOBHm_Chr2g0150821 RchiOBHm_Chr4g0446711 RchiOBHm_Chr7g0218911
rosa_laevigata	RLG00000002318 RLG00000002325 RLG00000002354 RLG00000005638 RLG00000020509
rosa_multiflora	Rmu_sc0001753.1_g000039 Rmu_sc0003823.1_g000004
rosa_roxburghii	Rroxscaffold_3G00240410
rosa_rugosa	Rorug02G0422600 Rorug04G0373900 Rorug07G0179700
rosa_samantha	Rh2AG482800 Rh2BG495400 Rh2CG469100 Rh2DG506200 Rh3BG339500 Rh4AG435400 Rh4BG444300 Rh4CG461600 Rh4DG443200 Rh7AG322900 Rh7BG314000 Rh7CG339700 Rh7DG320100
rosa_wichuraiana	Rw2G039570 Rw4G037220 Rw7G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	339
AccII	CGCG	1 cut(s)	88
AciI	CCGC	5 cut(s)	103, 337, 420, 426, 578
AclWI	GGATC	5 cut(s)	362, 375, 521, 534, 960
AcsI	RAATTY	2 cut(s)	248, 401
AcuI	CTGAAG	5 cut(s)	102, 303, 343, 825, 831
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	5 cut(s)	15, 559, 696, 755, 875
AfiI	CCNNNNNNNGG	4 cut(s)	351, 392, 685, 887
AgsI	TTSAA	5 cut(s)	179, 229, 392, 540, 548
AjnI	CCWGG	1 cut(s)	269
AleI	CACNNNNGTG	1 cut(s)	787
AluBI	AGCT	4 cut(s)	28, 188, 574, 863
AluI	AGCT	4 cut(s)	28, 188, 574, 863
Alw26I	GTCTC	1 cut(s)	954
AlwI	GGATC	5 cut(s)	362, 375, 521, 534, 960
AlwNI	CAGNNNCTG	1 cut(s)	125
ApeKI	GCWGC	2 cut(s)	28, 137
ApoI	RAATTY	2 cut(s)	248, 401
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	3 cut(s)	31, 60, 89
AsuNHI	GCTAGC	1 cut(s)	574
AvaII	GGWCC	1 cut(s)	287
BamHI	GGATCC	2 cut(s)	367, 526
BbsI	GAAGAC	1 cut(s)	503
BbvI	GCAGC	2 cut(s)	15, 124
BccI	CCATC	2 cut(s)	448, 888
BciT130I	CCWGG	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	954
BfaI	CTAG	2 cut(s)	446, 575
BfmI	CTRYAG	3 cut(s)	561, 642, 690
BisI	GCNGC	3 cut(s)	29, 104, 138
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	3 cut(s)	30, 105, 139
BmcAI	AGTACT	1 cut(s)	696
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	3 cut(s)	289, 369, 528
BmrFI	CCNGG	1 cut(s)	271
BmsI	GCATC	7 cut(s)	118, 149, 166, 313, 469, 589, 740
BmtI	GCTAGC	1 cut(s)	578
BpiI	GAAGAC	1 cut(s)	503
Bpu1102I	GCTNAGC	1 cut(s)	381
Bsa29I	ATCGAT	1 cut(s)	408
BsaBI	GATNNNNATC	1 cut(s)	525
BsaHI	GRCGYC	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	4 cut(s)	351, 392, 685, 887
Bse1I	ACTGG	2 cut(s)	530, 787
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	271
BseCI	ATCGAT	1 cut(s)	408
BseGI	GGATG	4 cut(s)	157, 333, 459, 586
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	4 cut(s)	351, 392, 685, 887
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	530, 787
BseXI	GCAGC	2 cut(s)	15, 124
Bsh1236I	CGCG	1 cut(s)	88
BshVI	ATCGAT	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	952
BslI	CCNNNNNNNGG	4 cut(s)	351, 392, 685, 887
BsmAI	GTCTC	1 cut(s)	954
BsmFI	GGGAC	1 cut(s)	952
BsmI	GAATGC	1 cut(s)	277
Bsp1407I	TGTACA	1 cut(s)	873
Bsp143I	GATC	3 cut(s)	367, 526, 952
Bsp1720I	GCTNAGC	1 cut(s)	381
BspACI	CCGC	5 cut(s)	103, 337, 420, 426, 578
BspCNI	CTCAG	1 cut(s)	430
BspDI	ATCGAT	1 cut(s)	408
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	289, 369, 528
BspMAI	CTGCAG	1 cut(s)	646
BspOI	GCTAGC	1 cut(s)	578
BspPI	GGATC	5 cut(s)	362, 375, 521, 534, 960
BsrBI	CCGCTC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	258
BsrGI	TGTACA	1 cut(s)	873
BsrI	ACTGG	2 cut(s)	530, 787
BssMI	GATC	3 cut(s)	367, 526, 952
BssNI	GRCGYC	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	3 cut(s)	300, 466, 694
BstACI	GRCGYC	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstAUI	TGTACA	1 cut(s)	873
BstC8I	GCNNGC	3 cut(s)	353, 576, 723
BstDEI	CTNAG	2 cut(s)	381, 438
BstENI	CCTNNNNNAGG	2 cut(s)	349, 390
BstF5I	GGATG	4 cut(s)	157, 333, 459, 586
BstFNI	CGCG	1 cut(s)	88
BstKTI	GATC	3 cut(s)	370, 529, 955
BstMAI	GTCTC	1 cut(s)	954
BstMBI	GATC	3 cut(s)	367, 526, 952
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 641
BstNI	CCWGG	1 cut(s)	271
BstNSI	RCATGY	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	269
BstSFI	CTRYAG	3 cut(s)	561, 642, 690
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	15, 124
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	3 cut(s)	367, 526, 952
BstYI	RGATCY	3 cut(s)	367, 526, 952
Bsu15I	ATCGAT	1 cut(s)	408
BsuTUI	ATCGAT	1 cut(s)	408
BtsCI	GGATG	4 cut(s)	157, 333, 459, 586
BtsIMutI	CAGTG	3 cut(s)	123, 537, 794
Cac8I	GCNNGC	3 cut(s)	353, 576, 723
CaiI	CAGNNNCTG	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	287
ClaI	ATCGAT	1 cut(s)	408
CsiI	ACCWGGT	1 cut(s)	269
Csp6I	GTAC	5 cut(s)	14, 558, 695, 754, 874
CviAII	CATG	1 cut(s)	629
CviQI	GTAC	5 cut(s)	14, 558, 695, 754, 874
DdeI	CTNAG	2 cut(s)	381, 438
DpnI	GATC	3 cut(s)	369, 528, 954
DpnII	GATC	3 cut(s)	367, 526, 952
DraI	TTTAAA	1 cut(s)	295
EciI	GGCGGA	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	287
Eco57I	CTGAAG	5 cut(s)	102, 303, 343, 825, 831
EcoNI	CCTNNNNNAGG	2 cut(s)	349, 390
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	269
EcoT22I	ATGCAT	1 cut(s)	733
FaeI	CATG	1 cut(s)	632
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FaqI	GGGAC	1 cut(s)	952
FatI	CATG	1 cut(s)	628
FauNDI	CATATG	1 cut(s)	727
Fnu4HI	GCNGC	3 cut(s)	29, 104, 138
FokI	GGATG	4 cut(s)	144, 320, 466, 593
Fsp4HI	GCNGC	3 cut(s)	29, 104, 138
FspBI	CTAG	2 cut(s)	446, 575
GluI	GCNGC	3 cut(s)	29, 104, 138
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	632
HincII	GTYRAC	2 cut(s)	216, 922
HindII	GTYRAC	2 cut(s)	216, 922
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	2 cut(s)	22, 313
HphI	GGTGA	3 cut(s)	31, 60, 89
Hpy166II	GTNNAC	4 cut(s)	92, 216, 874, 922
Hpy188I	TCNGA	6 cut(s)	121, 162, 283, 372, 439, 907
Hpy188III	TCNNGA	2 cut(s)	112, 809
Hpy8I	GTNNAC	4 cut(s)	92, 216, 874, 922
Hpy99I	CGWCG	3 cut(s)	13, 57, 88
HpyAV	CCTTC	5 cut(s)	173, 278, 386, 578, 943
HpyCH4III	ACNGT	3 cut(s)	300, 466, 694
HpyCH4IV	ACGT	2 cut(s)	763, 835
HpyCH4V	TGCA	6 cut(s)	31, 140, 304, 351, 644, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 641
HpyF3I	CTNAG	2 cut(s)	381, 438
HpySE526I	ACGT	2 cut(s)	763, 835
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	632
Kzo9I	GATC	3 cut(s)	367, 526, 952
LmnI	GCTCC	2 cut(s)	458, 746
Lsp1109I	GCAGC	2 cut(s)	15, 124
LweI	GCATC	7 cut(s)	118, 149, 166, 313, 469, 589, 740
MabI	ACCWGGT	1 cut(s)	269
MaeI	CTAG	2 cut(s)	446, 575
MaeII	ACGT	2 cut(s)	763, 835
MaeIII	GTNAC	3 cut(s)	466, 532, 802
MalI	GATC	3 cut(s)	369, 528, 954
MbiI	CCGCTC	1 cut(s)	339
MboI	GATC	3 cut(s)	367, 526, 952
MboII	GAAGA	9 cut(s)	32, 54, 57, 141, 144, 245, 503, 824, 903
MflI	RGATCY	3 cut(s)	367, 526, 952
MluCI	AATT	3 cut(s)	248, 401, 501
MmeI	TCCRAC	2 cut(s)	341, 724
MnlI	CCTC	3 cut(s)	90, 453, 610
Mph1103I	ATGCAT	1 cut(s)	733
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	787
MspA1I	CMGCKG	2 cut(s)	28, 103
MspR9I	CCNGG	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	271
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	137, 641
NdeI	CATATG	1 cut(s)	727
NdeII	GATC	3 cut(s)	367, 526, 952
NheI	GCTAGC	1 cut(s)	574
NlaIII	CATG	1 cut(s)	632
NlaIV	GGNNCC	3 cut(s)	289, 369, 528
NmuCI	GTSAC	2 cut(s)	466, 532
NsiI	ATGCAT	1 cut(s)	733
NspI	RCATGY	1 cut(s)	632
OliI	CACNNNNGTG	1 cut(s)	787
PcsI	WCGNNNNNNNCGW	1 cut(s)	718
PctI	GAATGC	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	22, 313
PkrI	GCNGC	3 cut(s)	30, 105, 139
PpuMI	RGGWCCY	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	3 cut(s)	289, 369, 528
PspPI	GGNCC	1 cut(s)	287
PspPPI	RGGWCCY	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	646
PstNI	CAGNNNCTG	1 cut(s)	125
PsuI	RGATCY	3 cut(s)	367, 526, 952
PvuII	CAGCTG	1 cut(s)	28
RsaI	GTAC	5 cut(s)	15, 559, 696, 755, 875
RsaNI	GTAC	5 cut(s)	14, 558, 695, 754, 874
RseI	CAYNNNNRTG	1 cut(s)	787
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	3 cut(s)	29, 104, 138
Sau3AI	GATC	3 cut(s)	367, 526, 952
Sau96I	GGNCC	1 cut(s)	287
ScaI	AGTACT	1 cut(s)	696
ScrFI	CCNGG	1 cut(s)	271
SexAI	ACCWGGT	1 cut(s)	269
SfaNI	GCATC	7 cut(s)	118, 149, 166, 313, 469, 589, 740
SfcI	CTRYAG	3 cut(s)	561, 642, 690
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	787
Sse9I	AATT	3 cut(s)	248, 401, 501
SsiI	CCGC	5 cut(s)	103, 337, 420, 426, 578
SspMI	CTAG	2 cut(s)	446, 575
StyD4I	CCNGG	1 cut(s)	269
TaaI	ACNGT	3 cut(s)	300, 466, 694
TaiI	ACGT	2 cut(s)	766, 838
TaqI	TCGA	6 cut(s)	55, 113, 341, 408, 624, 846
TasI	AATT	3 cut(s)	248, 401, 501
TatI	WGTACW	4 cut(s)	557, 694, 753, 873
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	22, 313
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	3 cut(s)	130, 537, 794
TseFI	GTSAC	2 cut(s)	466, 532
TseI	GCWGC	2 cut(s)	28, 137
Tsp45I	GTSAC	2 cut(s)	466, 532
TspDTI	ATGAA	5 cut(s)	246, 252, 322, 326, 597
TspGWI	ACGGA	2 cut(s)	72, 466
TspRI	CASTG	3 cut(s)	130, 537, 794
VpaK11BI	GGWCC	1 cut(s)	287
XagI	CCTNNNNNAGG	2 cut(s)	349, 390
XapI	RAATTY	2 cut(s)	248, 401
XceI	RCATGY	1 cut(s)	632
XspI	CTAG	2 cut(s)	446, 575
ZrmI	AGTACT	1 cut(s)	696
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.