Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003217

Physical Location & Seq

Genomic Coordinates Reverse (-)

32195451 .. 32197201

Gene Structure 1751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002325

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCCATGACTTGGAAGCTCTTGAAGCAAGTCCGAGCACCGTACACCGTCACTGCCTCTACGAGCCTCCACCGAATTCTACCCCCTCGATTGCTGAACTTGCATAATGCCACTAGGCTTTTCTCAAATGGGCCTCCGCTGCCTCCTCCTTCTGGAGAGCCTCCTCTGATTCAACTGCTGCAAAACCCTCCCTCTCCGTCTCCGTCGTCGCTGAACCAGGCAGAGCTTGCTAAGTTTGCCACCATTTCCGGAACCTGGTGGGATTTGGAAGGACCATTCAAACCGTTGCATGCAATGAATCCTACAAGGCTTGCCTTCATTCGCTCAACGCTGTGCCGTCATTTCAGGAGGGACTCGTTATCTGCTAGGCCCTTTGAAGGGCTCAGATTTATTGATGTTGGCTGTGGAGAGACAATATCCATCACATTGACATTTCTATTGCCCTACAAAGGGGCTTGTCGTAATAATAAGAGTGCTGGTGGTGGCGTTCAAGCGTTTGATATAGTTATAGTAGTGATGGTTTTGGTCTGGGGCGATGAATCAGGGTCAGGTAGAGGAGGTTGCAGTGGATTTTTTCATTGTTATAACACTAGACGTCGTAAAAGAGGAAAGGTAAAAGGGACCCCTGTTCAACCACGCAAAGGTAGACGGTTTTCATTGTTTGGTGTGTGTGGCAAGTCAAGGAAGAAAGCAGAGAAGACAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

236

Amino Acids

26.0

Weight (kDa)

10.95

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30920 AT2G30920
fragaria_vesca	FvH4_6g37760
malus_domestica	MD09G1156300.v1.1 MD17G1142800.v1.1
prunus_persica	Prupe.3G169300_v2.0.a1
pyrus_communis	pycom17g13580
rosa_chinensis	RchiOBHm_Chr2g0150821 RchiOBHm_Chr4g0446711 RchiOBHm_Chr7g0218911
rosa_laevigata	RLG00000002318 RLG00000002325 RLG00000002354 RLG00000005638 RLG00000020509
rosa_multiflora	Rmu_sc0001753.1_g000039 Rmu_sc0003823.1_g000004
rosa_roxburghii	Rroxscaffold_3G00240410
rosa_rugosa	Rorug02G0422600 Rorug04G0373900 Rorug07G0179700
rosa_samantha	Rh2AG482800 Rh2BG495400 Rh2CG469100 Rh2DG506200 Rh3BG339500 Rh4AG435400 Rh4BG444300 Rh4CG461600 Rh4DG443200 Rh7AG322900 Rh7BG314000 Rh7CG339700 Rh7DG320100
rosa_wichuraiana	Rw2G039570 Rw4G037220 Rw7G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
AatII	GACGTC	1 cut(s)	598
AccB7I	CCANNNNNTGG	1 cut(s)	12
AccI	GTMKAC	1 cut(s)	646
AccIII	TCCGGA	1 cut(s)	248
AciI	CCGC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	595
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	8 cut(s)	12, 152, 255, 377, 378, 449, 450, 641
AgsI	TTSAA	6 cut(s)	25, 173, 280, 377, 491, 632
AjnI	CCWGG	2 cut(s)	216, 254
AluBI	AGCT	2 cut(s)	19, 226
AluI	AGCT	2 cut(s)	19, 226
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	2 cut(s)	204, 404
Aor13HI	TCCGGA	1 cut(s)	248
AoxI	GGCC	3 cut(s)	3, 131, 368
ApeKI	GCWGC	2 cut(s)	139, 178
ApoI	RAATTY	1 cut(s)	75
AspS9I	GGNCC	4 cut(s)	131, 272, 369, 621
AvaII	GGWCC	2 cut(s)	272, 621
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	704
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	2 cut(s)	126, 165
BccI	CCATC	2 cut(s)	428, 511
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	2 cut(s)	218, 256
BcoDI	GTCTC	2 cut(s)	204, 404
BfaI	CTAG	3 cut(s)	114, 366, 591
BisI	GCNGC	2 cut(s)	140, 179
BlsI	GCNGC	2 cut(s)	141, 180
Bme1390I	CCNGG	2 cut(s)	218, 256
Bme18I	GGWCC	2 cut(s)	272, 621
BmgT120I	GGNCC	4 cut(s)	131, 272, 369, 621
BmiI	GGNNCC	3 cut(s)	253, 622, 623
BmrFI	CCNGG	2 cut(s)	218, 256
BpiI	GAAGAC	1 cut(s)	704
BpmI	CTGGAG	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	595
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	8 cut(s)	12, 152, 255, 377, 378, 449, 450, 641
Bse3DI	GCAATG	1 cut(s)	300
BseAI	TCCGGA	1 cut(s)	248
BseBI	CCWGG	2 cut(s)	218, 256
BseLI	CCNNNNNNNGG	8 cut(s)	12, 152, 255, 377, 378, 449, 450, 641
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	397
BseRI	GAGGAG	3 cut(s)	135, 153, 570
BseXI	GCAGC	2 cut(s)	126, 165
BshFI	GGCC	3 cut(s)	5, 133, 370
BsiHKAI	GWGCWC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	2 cut(s)	365, 634
BslI	CCNNNNNNNGG	8 cut(s)	12, 152, 255, 377, 378, 449, 450, 641
BsmAI	GTCTC	2 cut(s)	204, 404
BsmBI	CGTCTC	1 cut(s)	204
BsmFI	GGGAC	2 cut(s)	365, 634
BsnI	GGCC	3 cut(s)	5, 133, 370
Bsp1286I	GDGCHC	2 cut(s)	40, 384
Bsp13I	TCCGGA	1 cut(s)	248
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	3 cut(s)	5, 133, 370
BspCNI	CTCAG	1 cut(s)	396
BspEI	TCCGGA	1 cut(s)	248
BspLI	GGNNCC	3 cut(s)	253, 622, 623
BsrDI	GCAATG	1 cut(s)	300
BssNI	GRCGYC	1 cut(s)	595
Bst2UI	CCWGG	2 cut(s)	218, 256
Bst4CI	ACNGT	4 cut(s)	42, 49, 285, 651
BstACI	GRCGYC	1 cut(s)	595
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	3 cut(s)	228, 291, 312
BstDEI	CTNAG	2 cut(s)	231, 383
BstMAI	GTCTC	2 cut(s)	204, 404
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 100, 139, 227, 236
BstNI	CCWGG	2 cut(s)	218, 256
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	2 cut(s)	216, 254
BstV1I	GCAGC	2 cut(s)	126, 165
BstV2I	GAAGAC	1 cut(s)	704
BsuRI	GGCC	3 cut(s)	5, 133, 370
BtgZI	GCGATG	1 cut(s)	549
BtsI	GCAGTG	2 cut(s)	51, 571
BtsIMutI	CAGTG	2 cut(s)	51, 571
Cac8I	GCNNGC	3 cut(s)	228, 291, 312
Cfr13I	GGNCC	4 cut(s)	131, 272, 369, 621
CsiI	ACCWGGT	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	2 cut(s)	7, 290
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	2 cut(s)	231, 383
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	384
Eco47I	GGWCC	2 cut(s)	272, 621
EcoO109I	RGGNCCY	2 cut(s)	369, 621
EcoRI	GAATTC	1 cut(s)	75
EcoRII	CCWGG	2 cut(s)	216, 254
EcoT38I	GRGCYC	1 cut(s)	384
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	2 cut(s)	10, 293
FaiI	YATR	6 cut(s)	8, 105, 291, 503, 509, 585
FaqI	GGGAC	2 cut(s)	365, 634
FatI	CATG	2 cut(s)	6, 289
FblI	GTMKAC	1 cut(s)	646
Fnu4HI	GCNGC	2 cut(s)	140, 179
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	2 cut(s)	140, 179
FspBI	CTAG	3 cut(s)	114, 366, 591
GluI	GCNGC	2 cut(s)	140, 179
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	3 cut(s)	5, 133, 370
HapII	CCGG	1 cut(s)	249
Hin1I	GRCGYC	1 cut(s)	595
Hin1II	CATG	2 cut(s)	10, 293
HinfI	GANTC	4 cut(s)	169, 298, 353, 539
HpaII	CCGG	1 cut(s)	249
Hpy166II	GTNNAC	2 cut(s)	45, 647
Hpy188I	TCNGA	3 cut(s)	35, 168, 386
Hpy188III	TCNNGA	4 cut(s)	22, 153, 249, 346
Hpy8I	GTNNAC	2 cut(s)	45, 647
Hpy99I	CGWCG	3 cut(s)	208, 211, 600
HpyAV	CCTTC	4 cut(s)	159, 263, 325, 371
HpyCH4III	ACNGT	4 cut(s)	42, 49, 285, 651
HpyCH4IV	ACGT	1 cut(s)	595
HpyCH4V	TGCA	5 cut(s)	103, 181, 289, 293, 564
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 100, 139, 227, 236
HpyF3I	CTNAG	2 cut(s)	231, 383
HpySE526I	ACGT	1 cut(s)	595
Hsp92I	GRCGYC	1 cut(s)	595
Hsp92II	CATG	2 cut(s)	10, 293
KflI	GGGWCCC	1 cut(s)	621
Kpn2I	TCCGGA	1 cut(s)	248
Lsp1109I	GCAGC	2 cut(s)	126, 165
MabI	ACCWGGT	1 cut(s)	254
MaeI	CTAG	3 cut(s)	114, 366, 591
MaeII	ACGT	1 cut(s)	595
MaeIII	GTNAC	1 cut(s)	49
MboII	GAAGA	1 cut(s)	697
MhlI	GDGCHC	2 cut(s)	40, 384
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	75
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	347
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	139
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	2 cut(s)	218, 256
MvaI	CCWGG	2 cut(s)	218, 256
MwoI	GCNNNNNNNGC	5 cut(s)	25, 100, 139, 227, 236
NlaIII	CATG	2 cut(s)	10, 293
NlaIV	GGNNCC	3 cut(s)	253, 622, 623
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	293
PaeI	GCATGC	1 cut(s)	293
PfeI	GAWTC	3 cut(s)	169, 298, 539
PflMI	CCANNNNNTGG	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	141, 180
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PpuMI	RGGWCCY	1 cut(s)	621
PsiI	TTATAA	1 cut(s)	585
Psp5II	RGGWCCY	1 cut(s)	621
Psp6I	CCWGG	2 cut(s)	216, 254
PspGI	CCWGG	2 cut(s)	216, 254
PspN4I	GGNNCC	3 cut(s)	253, 622, 623
PspPI	GGNCC	4 cut(s)	131, 272, 369, 621
PspPPI	RGGWCCY	1 cut(s)	621
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SatI	GCNGC	2 cut(s)	140, 179
Sau96I	GGNCC	4 cut(s)	131, 272, 369, 621
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	218, 256
SduI	GDGCHC	2 cut(s)	40, 384
SetI	ASST	8 cut(s)	21, 228, 257, 553, 562, 598, 615, 646
SexAI	ACCWGGT	1 cut(s)	254
SinI	GGWCC	2 cut(s)	272, 621
SphI	GCATGC	1 cut(s)	293
Sse9I	AATT	1 cut(s)	75
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	3 cut(s)	114, 366, 591
StyD4I	CCNGG	2 cut(s)	216, 254
TaaI	ACNGT	4 cut(s)	42, 49, 285, 651
TaiI	ACGT	1 cut(s)	598
TaqI	TCGA	1 cut(s)	88
TasI	AATT	1 cut(s)	75
TfiI	GAWTC	3 cut(s)	169, 298, 539
TscAI	CASTG	2 cut(s)	58, 571
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	139, 178
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	5 cut(s)	307, 311, 552, 566, 645
TspGWI	ACGGA	2 cut(s)	186, 192
TspRI	CASTG	2 cut(s)	58, 571
Van91I	CCANNNNNTGG	1 cut(s)	12
VpaK11BI	GGWCC	2 cut(s)	272, 621
XapI	RAATTY	1 cut(s)	75
XceI	RCATGY	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	646
XspI	CTAG	3 cut(s)	114, 366, 591
ZraI	GACGTC	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.