Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003217

Physical Location & Seq

Genomic Coordinates Reverse (-)

69275554 .. 69278594

Gene Structure 3041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG461600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCATGACTTGGAAGCTCCTGAAGCAACTCCGACCGCCACCGTACACCGCCACCGCCTCTGCCTCTGCGAGCCTCCACCGCCCTCGATTTCTCAACTTCCATAATGCCACTCGGCTCTTCTCCGATGCGCCTCCGCCCTCCGGAGAGCCTCCTCCGTCGATTCCACCGCCTCAAAACCCTCACTCTCCCTCGCCGTCGTCTCTGAACCAGGCAGAGCTCGCTAAGTTCGCCGCCATTGCCGGAACCTGGTGGGATTCTGAAGGACCATTCAAACCTTTGCATGCCATGAATCCTACAAGACTCGCCTTCGTTCGCTCCACGCTGTGTCGTCATTTCAGGAGGGATCCATTATCTGCTAGGCCCTTTGAAGGGCTCAAGTTTCTTGATGTTGGCTGTGGTGGTGGAATTCTGTCTGAGCCTTTAGCACGGATGGGAGCTTCTGTAACGGGAGTTGATGCTGTTGATAAAAATATCAAGATAGCTCGCCTTCATGCTGATTTGGATCCGGTGACCTCAAGCATTGAATATCATTGCACAACAGCTGAAAAGCTAGTCGAGGAGCAGAGGAGTTTTGATGCTGTGTTTGCTTTAGAGGTAATTGAGCACGTGGCAAATCCTGCTGAGTTCTGCAAATCTCTGTCTGCCTTAACTGTTCCTGATGGAGCTACCGTGATTTCAACTATTAACCGTTCTATGAGAGCATATGCTACTGCAATTGTTGCTGCCGAGTATCTCCTCCATTGGCTTCCTAAAGGTACACATCAATGGTCCAGTTTCCTTACTCCTGAAGAACTAGTCTTGATCCTGGAGCGTGCTTCTATTTCGGTCCAAGAGATGGCTGGATTTGCATACAACCCTCTGACAGGAAGATGGTTTATATCTGACGATGTTGGTGTAAACTTTATCGCTTATGGTACCAAAACAGAAACAGTCACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

314

Amino Acids

34.36

Weight (kDa)

6.55

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	116 - 273	4.8e-21	Methyltransferase domain
Methyltransf_31	PF13847	124 - 255	8.6e-14	Methyltransferase domain
CMAS	PF02353	124 - 236	3.3e-07	Mycolic acid cyclopropane synthetase
PrmA	PF06325	126 - 229	2.5e-07	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_11	PF08241	129 - 225	2e-19	Methyltransferase domain
Methyltransf_25	PF13649	129 - 222	2.1e-15	Methyltransferase domain
Methyltransf_12	PF08242	129 - 222	5.3e-12	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30920 AT2G30920
fragaria_vesca	FvH4_6g37760
malus_domestica	MD09G1156300.v1.1 MD17G1142800.v1.1
prunus_persica	Prupe.3G169300_v2.0.a1
pyrus_communis	pycom17g13580
rosa_chinensis	RchiOBHm_Chr2g0150821 RchiOBHm_Chr4g0446711 RchiOBHm_Chr7g0218911
rosa_laevigata	RLG00000002318 RLG00000002325 RLG00000002354 RLG00000005638 RLG00000020509
rosa_multiflora	Rmu_sc0001753.1_g000039 Rmu_sc0003823.1_g000004
rosa_roxburghii	Rroxscaffold_3G00240410
rosa_rugosa	Rorug02G0422600 Rorug04G0373900 Rorug07G0179700
rosa_samantha	Rh2AG482800 Rh2BG495400 Rh2CG469100 Rh2DG506200 Rh3BG339500 Rh4AG435400 Rh4BG444300 Rh4CG461600 Rh4DG443200 Rh7AG322900 Rh7BG314000 Rh7CG339700 Rh7DG320100
rosa_wichuraiana	Rw2G039570 Rw4G037220 Rw7G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	917
AccB1I	GGYRCC	1 cut(s)	917
AccB7I	CCANNNNNTGG	2 cut(s)	12, 838
AccIII	TCCGGA	1 cut(s)	143
AciI	CCGC	7 cut(s)	38, 51, 57, 82, 137, 170, 234
AclWI	GGATC	5 cut(s)	341, 354, 500, 513, 799
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	408
AcuI	CTGAAG	3 cut(s)	44, 282, 810
AcvI	CACGTG	1 cut(s)	610
AdeI	CACNNNGTG	1 cut(s)	327
AfaI	GTAC	3 cut(s)	47, 760, 919
AfiI	CCNNNNNNNGG	7 cut(s)	12, 143, 249, 371, 372, 838, 866
AgsI	TTSAA	4 cut(s)	274, 371, 527, 681
AhlI	ACTAGT	1 cut(s)	796
AjnI	CCWGG	3 cut(s)	210, 248, 807
AluBI	AGCT	7 cut(s)	19, 220, 440, 485, 545, 553, 668
AluI	AGCT	7 cut(s)	19, 220, 440, 485, 545, 553, 668
Alw21I	GWGCWC	2 cut(s)	222, 609
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	5 cut(s)	341, 354, 500, 513, 799
Aor13HI	TCCGGA	1 cut(s)	143
AoxI	GGCC	2 cut(s)	3, 362
ApeKI	GCWGC	1 cut(s)	725
ApoI	RAATTY	1 cut(s)	408
Asp718I	GGTACC	1 cut(s)	917
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	4 cut(s)	266, 363, 771, 829
AsuHPI	GGTGA	1 cut(s)	523
AvaII	GGWCC	3 cut(s)	266, 771, 829
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	346, 505
BanI	GGYRCC	1 cut(s)	917
BanII	GRGCYC	2 cut(s)	222, 378
BbrPI	CACGTG	1 cut(s)	610
Bbv12I	GWGCWC	2 cut(s)	222, 609
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	4 cut(s)	427, 656, 832, 867
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	3 cut(s)	212, 250, 809
BcoDI	GTCTC	1 cut(s)	207
BcuI	ACTAGT	1 cut(s)	796
BfaI	CTAG	3 cut(s)	360, 554, 797
BisI	GCNGC	2 cut(s)	234, 726
BlsI	GCNGC	2 cut(s)	235, 727
Bme1390I	CCNGG	3 cut(s)	212, 250, 809
Bme18I	GGWCC	3 cut(s)	266, 771, 829
BmgT120I	GGNCC	4 cut(s)	266, 363, 771, 829
BmiI	GGNNCC	4 cut(s)	247, 348, 507, 919
BmrFI	CCNGG	3 cut(s)	212, 250, 809
BmsI	GCATC	3 cut(s)	118, 448, 568
BpmI	CTGGAG	1 cut(s)	830
BpuEI	CTTGAG	2 cut(s)	362, 502
BsaAI	YACGTR	1 cut(s)	610
BsaBI	GATNNNNATC	1 cut(s)	504
BsaWI	WCCGGW	2 cut(s)	143, 508
BsaXI	ACNNNNNCTCC	4 cut(s)	429, 459, 657, 687
Bsc4I	CCNNNNNNNGG	7 cut(s)	12, 143, 249, 371, 372, 838, 866
Bse1I	ACTGG	1 cut(s)	774
Bse3DI	GCAATG	2 cut(s)	237, 532
Bse8I	GATNNNNATC	1 cut(s)	504
BseAI	TCCGGA	1 cut(s)	143
BseBI	CCWGG	3 cut(s)	212, 250, 809
BseGI	GGATG	1 cut(s)	438
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	7 cut(s)	12, 143, 249, 371, 372, 838, 866
BseMI	GCAATG	2 cut(s)	237, 532
BseMII	CTCAG	2 cut(s)	408, 615
BseNI	ACTGG	1 cut(s)	774
BseRI	GAGGAG	4 cut(s)	144, 575, 583, 728
BseXI	GCAGC	1 cut(s)	712
Bsh1285I	CGRYCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	5, 364
BshNI	GGYRCC	1 cut(s)	917
BsiEI	CGRYCG	1 cut(s)	38
BsiHKAI	GWGCWC	2 cut(s)	222, 609
BsiSI	CCGG	3 cut(s)	144, 243, 509
BslI	CCNNNNNNNGG	7 cut(s)	12, 143, 249, 371, 372, 838, 866
BsmAI	GTCTC	1 cut(s)	207
BsmBI	CGTCTC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	5, 364
Bsp1286I	GDGCHC	3 cut(s)	222, 378, 609
Bsp13I	TCCGGA	1 cut(s)	143
Bsp143I	GATC	3 cut(s)	346, 505, 804
BspACI	CCGC	7 cut(s)	38, 51, 57, 82, 137, 170, 234
BspANI	GGCC	2 cut(s)	5, 364
BspCNI	CTCAG	2 cut(s)	409, 616
BspEI	TCCGGA	1 cut(s)	143
BspLI	GGNNCC	4 cut(s)	247, 348, 507, 919
BspPI	GGATC	5 cut(s)	341, 354, 500, 513, 799
BspQI	GCTCTTC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	917
BsrDI	GCAATG	2 cut(s)	237, 532
BsrI	ACTGG	1 cut(s)	774
BssMI	GATC	3 cut(s)	346, 505, 804
Bst2UI	CCWGG	3 cut(s)	212, 250, 809
Bst4CI	ACNGT	5 cut(s)	45, 655, 673, 692, 934
Bst6I	CTCTTC	1 cut(s)	125
BstAPI	GCANNNNNTGC	2 cut(s)	620, 722
BstBAI	YACGTR	1 cut(s)	610
BstC8I	GCNNGC	5 cut(s)	73, 222, 285, 487, 816
BstDEI	CTNAG	3 cut(s)	225, 417, 624
BstEII	GGTNACC	1 cut(s)	511
BstENI	CCTNNNNNAGG	1 cut(s)	864
BstF5I	GGATG	1 cut(s)	438
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	3 cut(s)	349, 508, 807
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	3 cut(s)	346, 505, 804
BstMCI	CGRYCG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	9 cut(s)	25, 81, 221, 230, 239, 587, 620, 722, 848
BstNI	CCWGG	3 cut(s)	212, 250, 809
BstNSI	RCATGY	1 cut(s)	287
BstPI	GGTNACC	1 cut(s)	511
BstSCI	CCNGG	3 cut(s)	210, 248, 807
BstV1I	GCAGC	1 cut(s)	712
BstX2I	RGATCY	2 cut(s)	346, 505
BstYI	RGATCY	2 cut(s)	346, 505
BsuRI	GGCC	2 cut(s)	5, 364
BtsCI	GGATG	1 cut(s)	438
Cac8I	GCNNGC	5 cut(s)	73, 222, 285, 487, 816
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	4 cut(s)	266, 363, 771, 829
CsiI	ACCWGGT	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	46, 759, 918
CviAII	CATG	4 cut(s)	7, 284, 289, 494
CviQI	GTAC	3 cut(s)	46, 759, 918
DdeI	CTNAG	3 cut(s)	225, 417, 624
DpnI	GATC	3 cut(s)	348, 507, 806
DpnII	GATC	3 cut(s)	346, 505, 804
DraIII	CACNNNGTG	1 cut(s)	327
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
EciI	GGCGGA	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	2 cut(s)	222, 378
Eco47I	GGWCC	3 cut(s)	266, 771, 829
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	3 cut(s)	44, 282, 810
Eco72I	CACGTG	1 cut(s)	610
Eco91I	GGTNACC	1 cut(s)	511
EcoICRI	GAGCTC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	864
EcoO109I	RGGNCCY	1 cut(s)	363
EcoO65I	GGTNACC	1 cut(s)	511
EcoRI	GAATTC	1 cut(s)	408
EcoRII	CCWGG	3 cut(s)	210, 248, 807
EcoT38I	GRGCYC	2 cut(s)	222, 378
Esp3I	CGTCTC	1 cut(s)	207
FaeI	CATG	4 cut(s)	10, 287, 292, 497
FatI	CATG	4 cut(s)	6, 283, 288, 493
FauNDI	CATATG	1 cut(s)	706
Fnu4HI	GCNGC	2 cut(s)	234, 726
FokI	GGATG	1 cut(s)	445
FriOI	GRGCYC	2 cut(s)	222, 378
Fsp4HI	GCNGC	2 cut(s)	234, 726
FspBI	CTAG	3 cut(s)	360, 554, 797
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	2 cut(s)	234, 726
GsuI	CTGGAG	1 cut(s)	830
HaeIII	GGCC	2 cut(s)	5, 364
HapII	CCGG	3 cut(s)	144, 243, 509
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	4 cut(s)	10, 287, 292, 497
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	4 cut(s)	163, 257, 292, 303
HpaII	CCGG	3 cut(s)	144, 243, 509
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	3 cut(s)	48, 761, 901
Hpy188I	TCNGA	7 cut(s)	35, 127, 207, 262, 418, 864, 886
Hpy188III	TCNNGA	8 cut(s)	22, 144, 340, 386, 478, 659, 788, 802
Hpy8I	GTNNAC	3 cut(s)	48, 761, 901
Hpy99I	CGWCG	2 cut(s)	163, 202
HpyAV	CCTTC	4 cut(s)	257, 319, 365, 500
HpyCH4III	ACNGT	5 cut(s)	45, 655, 673, 692, 934
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	5 cut(s)	283, 537, 633, 716, 851
HpyF10VI	GCNNNNNNNGC	9 cut(s)	25, 81, 221, 230, 239, 587, 620, 722, 848
HpyF3I	CTNAG	3 cut(s)	225, 417, 624
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	4 cut(s)	10, 287, 292, 497
HspAI	GCGC	1 cut(s)	131
Kpn2I	TCCGGA	1 cut(s)	143
KpnI	GGTACC	1 cut(s)	921
Kzo9I	GATC	3 cut(s)	346, 505, 804
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	6 cut(s)	24, 323, 437, 562, 665, 811
Lsp1109I	GCAGC	1 cut(s)	712
LweI	GCATC	3 cut(s)	118, 448, 568
MabI	ACCWGGT	1 cut(s)	248
MaeI	CTAG	3 cut(s)	360, 554, 797
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	3 cut(s)	445, 511, 934
MalI	GATC	3 cut(s)	348, 507, 806
MboI	GATC	3 cut(s)	346, 505, 804
MboII	GAAGA	3 cut(s)	112, 803, 882
MfeI	CAATTG	1 cut(s)	717
MflI	RGATCY	2 cut(s)	346, 505
MhlI	GDGCHC	3 cut(s)	222, 378, 609
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	408, 600, 717
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	297
MmeI	TCCRAC	1 cut(s)	58
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	650, 687
MslI	CAYNNNNRTG	1 cut(s)	766
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	3 cut(s)	144, 243, 509
MspR9I	CCNGG	3 cut(s)	212, 250, 809
MunI	CAATTG	1 cut(s)	717
MvaI	CCWGG	3 cut(s)	212, 250, 809
MwoI	GCNNNNNNNGC	9 cut(s)	25, 81, 221, 230, 239, 587, 620, 722, 848
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	3 cut(s)	346, 505, 804
NlaIII	CATG	4 cut(s)	10, 287, 292, 497
NlaIV	GGNNCC	4 cut(s)	247, 348, 507, 919
NmeAIII	GCCGAG	2 cut(s)	94, 754
NmuCI	GTSAC	2 cut(s)	511, 934
NspI	RCATGY	1 cut(s)	287
PaeI	GCATGC	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	125
PfeI	GAWTC	3 cut(s)	163, 257, 292
PflMI	CCANNNNNTGG	2 cut(s)	12, 838
PfoI	TCCNGGA	1 cut(s)	807
PkrI	GCNGC	2 cut(s)	235, 727
PleI	GAGTC	1 cut(s)	297
PmaCI	CACGTG	1 cut(s)	610
PmlI	CACGTG	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	297
Ppu21I	YACGTR	1 cut(s)	610
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	3 cut(s)	210, 248, 807
PspCI	CACGTG	1 cut(s)	610
PspEI	GGTNACC	1 cut(s)	511
PspGI	CCWGG	3 cut(s)	210, 248, 807
PspN4I	GGNNCC	4 cut(s)	247, 348, 507, 919
PspPI	GGNCC	4 cut(s)	266, 363, 771, 829
PsuI	RGATCY	2 cut(s)	346, 505
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	3 cut(s)	47, 760, 919
RsaNI	GTAC	3 cut(s)	46, 759, 918
RseI	CAYNNNNRTG	1 cut(s)	766
SacI	GAGCTC	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	650, 687
SatI	GCNGC	2 cut(s)	234, 726
Sau3AI	GATC	3 cut(s)	346, 505, 804
Sau96I	GGNCC	4 cut(s)	266, 363, 771, 829
SchI	GAGTC	1 cut(s)	297
ScrFI	CCNGG	3 cut(s)	212, 250, 809
SduI	GDGCHC	3 cut(s)	222, 378, 609
SexAI	ACCWGGT	1 cut(s)	248
SfaNI	GCATC	3 cut(s)	118, 448, 568
SinI	GGWCC	3 cut(s)	266, 771, 829
SmiMI	CAYNNNNRTG	1 cut(s)	766
SmlI	CTYRAG	2 cut(s)	377, 517
SmoI	CTYRAG	2 cut(s)	377, 517
SpeI	ACTAGT	1 cut(s)	796
SphI	GCATGC	1 cut(s)	287
Sse9I	AATT	3 cut(s)	408, 600, 717
SsiI	CCGC	7 cut(s)	38, 51, 57, 82, 137, 170, 234
SspMI	CTAG	3 cut(s)	360, 554, 797
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	210, 248, 807
TaaI	ACNGT	5 cut(s)	45, 655, 673, 692, 934
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	3 cut(s)	88, 161, 558
TaqII	GACCGA	1 cut(s)	817
TasI	AATT	3 cut(s)	408, 600, 717
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	3 cut(s)	163, 257, 292
Tru1I	TTAA	2 cut(s)	650, 687
Tru9I	TTAA	2 cut(s)	650, 687
TseFI	GTSAC	2 cut(s)	511, 934
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	2 cut(s)	511, 934
TspDTI	ATGAA	2 cut(s)	305, 482
TspGWI	ACGGA	2 cut(s)	147, 445
Van91I	CCANNNNNTGG	2 cut(s)	12, 838
VpaK11BI	GGWCC	3 cut(s)	266, 771, 829
XagI	CCTNNNNNAGG	1 cut(s)	864
XapI	RAATTY	1 cut(s)	408
XceI	RCATGY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	839
XspI	CTAG	3 cut(s)	360, 554, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.