Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003217

Physical Location & Seq

Genomic Coordinates Reverse (-)

58408501 .. 58411541

Gene Structure 3041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG444300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCATGACTTGGAAGCTCCTGAAGCAACTCCGACCGCCACCGTACACCGCCACCGCCTCTGCCTCTGCGAGCCTCCACCGCCCTCGATTTCTCAACTTCCATAATGCCACTCGGCTCTTCTCCGATGCGCCTCCGCCCTCCGGAGAGCCTCCTCCGTCGATTCCACCGCCTCAAAACCCTCACTCTCCCTCGCCGTCGTCTCTGAACCAGGCAGAGCTCGCTAAGTTCGCCGCCATTGCCGGAACCTGGTGGGATTCTGAAGGACCATTCAAACCTTTGCATGCCATGAATCCTACAAGACTCGCCTTCGTTCGCTCCACGCTGTGTCGTCATTTCAGGAGGGATCCATTATCTGCTAGGCCCTTTGAAGGGCTCAAGTTTCTTGATGTTGGCTGTGGTGGTGGAATTCTGTCTGAGCCTTTAGCACGGATGGGAGCTTCTGTAACGGGAGTTGATGCTGTTGATAAAAATATCAAGATAGCTCGCCTTCATGCTGATTTGGATCCGGTGACCTCAAGCATTGAATATCATTGCACAACAGCTGAAAAGCTAGTCGAGGAGCAGAGGAGTTTTGATGCTGTGTTTGCTTTAGAGGTAATTGAGCACGTGGCAAATCCTGCTGAGTTCTGCAAATCTCTGTCTGCCTTAACTGTTCCTGATGGAGCTACCGTGATTTCAACTATTAACCGTTCTATGAGAGCATATGCTACTGCAATTGTTGCTGCCGAGTATCTCCTCCATTGGCTTCCTAAAGGTACACATCAATGGTCCAGTTTCCTTACTCCTGAAGAACTAGTCTTGATCCTGGAGCGTGCTTCTATTTCGGTCCAAGAGATGGCTGGATTTGCATACAACCCTCTGACAGGAAGATGGTTTATATCTGACGATGTTGGTGTAAACTTTATCGCTTATGGTACCAAAACAGAAACAGTCACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

314

Amino Acids

34.36

Weight (kDa)

6.55

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	116 - 273	4.8e-21	Methyltransferase domain
Methyltransf_31	PF13847	124 - 255	8.6e-14	Methyltransferase domain
CMAS	PF02353	124 - 236	3.3e-07	Mycolic acid cyclopropane synthetase
PrmA	PF06325	126 - 229	2.5e-07	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_11	PF08241	129 - 225	2e-19	Methyltransferase domain
Methyltransf_25	PF13649	129 - 222	2.1e-15	Methyltransferase domain
Methyltransf_12	PF08242	129 - 222	5.3e-12	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30920 AT2G30920
fragaria_vesca	FvH4_6g37760
malus_domestica	MD09G1156300.v1.1 MD17G1142800.v1.1
prunus_persica	Prupe.3G169300_v2.0.a1
pyrus_communis	pycom17g13580
rosa_chinensis	RchiOBHm_Chr2g0150821 RchiOBHm_Chr4g0446711 RchiOBHm_Chr7g0218911
rosa_laevigata	RLG00000002318 RLG00000002325 RLG00000002354 RLG00000005638 RLG00000020509
rosa_multiflora	Rmu_sc0001753.1_g000039 Rmu_sc0003823.1_g000004
rosa_roxburghii	Rroxscaffold_3G00240410
rosa_rugosa	Rorug02G0422600 Rorug04G0373900 Rorug07G0179700
rosa_samantha	Rh2AG482800 Rh2BG495400 Rh2CG469100 Rh2DG506200 Rh3BG339500 Rh4AG435400 Rh4BG444300 Rh4CG461600 Rh4DG443200 Rh7AG322900 Rh7BG314000 Rh7CG339700 Rh7DG320100
rosa_wichuraiana	Rw2G039570 Rw4G037220 Rw7G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	917
AccB1I	GGYRCC	1 cut(s)	917
AccB7I	CCANNNNNTGG	2 cut(s)	12, 838
AccIII	TCCGGA	1 cut(s)	143
AciI	CCGC	7 cut(s)	38, 51, 57, 82, 137, 170, 234
AclWI	GGATC	5 cut(s)	341, 354, 500, 513, 799
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	408
AcuI	CTGAAG	3 cut(s)	44, 282, 810
AcvI	CACGTG	1 cut(s)	610
AdeI	CACNNNGTG	1 cut(s)	327
AfaI	GTAC	3 cut(s)	47, 760, 919
AfiI	CCNNNNNNNGG	7 cut(s)	12, 143, 249, 371, 372, 838, 866
AgsI	TTSAA	4 cut(s)	274, 371, 527, 681
AhlI	ACTAGT	1 cut(s)	796
AjnI	CCWGG	3 cut(s)	210, 248, 807
AluBI	AGCT	7 cut(s)	19, 220, 440, 485, 545, 553, 668
AluI	AGCT	7 cut(s)	19, 220, 440, 485, 545, 553, 668
Alw21I	GWGCWC	2 cut(s)	222, 609
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	5 cut(s)	341, 354, 500, 513, 799
Aor13HI	TCCGGA	1 cut(s)	143
AoxI	GGCC	2 cut(s)	3, 362
ApeKI	GCWGC	1 cut(s)	725
ApoI	RAATTY	1 cut(s)	408
Asp718I	GGTACC	1 cut(s)	917
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	4 cut(s)	266, 363, 771, 829
AsuHPI	GGTGA	1 cut(s)	523
AvaII	GGWCC	3 cut(s)	266, 771, 829
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	346, 505
BanI	GGYRCC	1 cut(s)	917
BanII	GRGCYC	2 cut(s)	222, 378
BbrPI	CACGTG	1 cut(s)	610
Bbv12I	GWGCWC	2 cut(s)	222, 609
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	4 cut(s)	427, 656, 832, 867
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	3 cut(s)	212, 250, 809
BcoDI	GTCTC	1 cut(s)	207
BcuI	ACTAGT	1 cut(s)	796
BfaI	CTAG	3 cut(s)	360, 554, 797
BisI	GCNGC	2 cut(s)	234, 726
BlsI	GCNGC	2 cut(s)	235, 727
Bme1390I	CCNGG	3 cut(s)	212, 250, 809
Bme18I	GGWCC	3 cut(s)	266, 771, 829
BmgT120I	GGNCC	4 cut(s)	266, 363, 771, 829
BmiI	GGNNCC	4 cut(s)	247, 348, 507, 919
BmrFI	CCNGG	3 cut(s)	212, 250, 809
BmsI	GCATC	3 cut(s)	118, 448, 568
BpmI	CTGGAG	1 cut(s)	830
BpuEI	CTTGAG	2 cut(s)	362, 502
BsaAI	YACGTR	1 cut(s)	610
BsaBI	GATNNNNATC	1 cut(s)	504
BsaWI	WCCGGW	2 cut(s)	143, 508
BsaXI	ACNNNNNCTCC	4 cut(s)	429, 459, 657, 687
Bsc4I	CCNNNNNNNGG	7 cut(s)	12, 143, 249, 371, 372, 838, 866
Bse1I	ACTGG	1 cut(s)	774
Bse3DI	GCAATG	2 cut(s)	237, 532
Bse8I	GATNNNNATC	1 cut(s)	504
BseAI	TCCGGA	1 cut(s)	143
BseBI	CCWGG	3 cut(s)	212, 250, 809
BseGI	GGATG	1 cut(s)	438
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	7 cut(s)	12, 143, 249, 371, 372, 838, 866
BseMI	GCAATG	2 cut(s)	237, 532
BseMII	CTCAG	2 cut(s)	408, 615
BseNI	ACTGG	1 cut(s)	774
BseRI	GAGGAG	4 cut(s)	144, 575, 583, 728
BseXI	GCAGC	1 cut(s)	712
Bsh1285I	CGRYCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	5, 364
BshNI	GGYRCC	1 cut(s)	917
BsiEI	CGRYCG	1 cut(s)	38
BsiHKAI	GWGCWC	2 cut(s)	222, 609
BsiSI	CCGG	3 cut(s)	144, 243, 509
BslI	CCNNNNNNNGG	7 cut(s)	12, 143, 249, 371, 372, 838, 866
BsmAI	GTCTC	1 cut(s)	207
BsmBI	CGTCTC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	5, 364
Bsp1286I	GDGCHC	3 cut(s)	222, 378, 609
Bsp13I	TCCGGA	1 cut(s)	143
Bsp143I	GATC	3 cut(s)	346, 505, 804
BspACI	CCGC	7 cut(s)	38, 51, 57, 82, 137, 170, 234
BspANI	GGCC	2 cut(s)	5, 364
BspCNI	CTCAG	2 cut(s)	409, 616
BspEI	TCCGGA	1 cut(s)	143
BspLI	GGNNCC	4 cut(s)	247, 348, 507, 919
BspPI	GGATC	5 cut(s)	341, 354, 500, 513, 799
BspQI	GCTCTTC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	917
BsrDI	GCAATG	2 cut(s)	237, 532
BsrI	ACTGG	1 cut(s)	774
BssMI	GATC	3 cut(s)	346, 505, 804
Bst2UI	CCWGG	3 cut(s)	212, 250, 809
Bst4CI	ACNGT	5 cut(s)	45, 655, 673, 692, 934
Bst6I	CTCTTC	1 cut(s)	125
BstAPI	GCANNNNNTGC	2 cut(s)	620, 722
BstBAI	YACGTR	1 cut(s)	610
BstC8I	GCNNGC	5 cut(s)	73, 222, 285, 487, 816
BstDEI	CTNAG	3 cut(s)	225, 417, 624
BstEII	GGTNACC	1 cut(s)	511
BstENI	CCTNNNNNAGG	1 cut(s)	864
BstF5I	GGATG	1 cut(s)	438
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	3 cut(s)	349, 508, 807
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	3 cut(s)	346, 505, 804
BstMCI	CGRYCG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	9 cut(s)	25, 81, 221, 230, 239, 587, 620, 722, 848
BstNI	CCWGG	3 cut(s)	212, 250, 809
BstNSI	RCATGY	1 cut(s)	287
BstPI	GGTNACC	1 cut(s)	511
BstSCI	CCNGG	3 cut(s)	210, 248, 807
BstV1I	GCAGC	1 cut(s)	712
BstX2I	RGATCY	2 cut(s)	346, 505
BstYI	RGATCY	2 cut(s)	346, 505
BsuRI	GGCC	2 cut(s)	5, 364
BtsCI	GGATG	1 cut(s)	438
Cac8I	GCNNGC	5 cut(s)	73, 222, 285, 487, 816
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	4 cut(s)	266, 363, 771, 829
CsiI	ACCWGGT	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	46, 759, 918
CviAII	CATG	4 cut(s)	7, 284, 289, 494
CviQI	GTAC	3 cut(s)	46, 759, 918
DdeI	CTNAG	3 cut(s)	225, 417, 624
DpnI	GATC	3 cut(s)	348, 507, 806
DpnII	GATC	3 cut(s)	346, 505, 804
DraIII	CACNNNGTG	1 cut(s)	327
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
EciI	GGCGGA	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	2 cut(s)	222, 378
Eco47I	GGWCC	3 cut(s)	266, 771, 829
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	3 cut(s)	44, 282, 810
Eco72I	CACGTG	1 cut(s)	610
Eco91I	GGTNACC	1 cut(s)	511
EcoICRI	GAGCTC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	864
EcoO109I	RGGNCCY	1 cut(s)	363
EcoO65I	GGTNACC	1 cut(s)	511
EcoRI	GAATTC	1 cut(s)	408
EcoRII	CCWGG	3 cut(s)	210, 248, 807
EcoT38I	GRGCYC	2 cut(s)	222, 378
Esp3I	CGTCTC	1 cut(s)	207
FaeI	CATG	4 cut(s)	10, 287, 292, 497
FatI	CATG	4 cut(s)	6, 283, 288, 493
FauNDI	CATATG	1 cut(s)	706
Fnu4HI	GCNGC	2 cut(s)	234, 726
FokI	GGATG	1 cut(s)	445
FriOI	GRGCYC	2 cut(s)	222, 378
Fsp4HI	GCNGC	2 cut(s)	234, 726
FspBI	CTAG	3 cut(s)	360, 554, 797
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	2 cut(s)	234, 726
GsuI	CTGGAG	1 cut(s)	830
HaeIII	GGCC	2 cut(s)	5, 364
HapII	CCGG	3 cut(s)	144, 243, 509
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	4 cut(s)	10, 287, 292, 497
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	4 cut(s)	163, 257, 292, 303
HpaII	CCGG	3 cut(s)	144, 243, 509
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	3 cut(s)	48, 761, 901
Hpy188I	TCNGA	7 cut(s)	35, 127, 207, 262, 418, 864, 886
Hpy188III	TCNNGA	8 cut(s)	22, 144, 340, 386, 478, 659, 788, 802
Hpy8I	GTNNAC	3 cut(s)	48, 761, 901
Hpy99I	CGWCG	2 cut(s)	163, 202
HpyAV	CCTTC	4 cut(s)	257, 319, 365, 500
HpyCH4III	ACNGT	5 cut(s)	45, 655, 673, 692, 934
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	5 cut(s)	283, 537, 633, 716, 851
HpyF10VI	GCNNNNNNNGC	9 cut(s)	25, 81, 221, 230, 239, 587, 620, 722, 848
HpyF3I	CTNAG	3 cut(s)	225, 417, 624
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	4 cut(s)	10, 287, 292, 497
HspAI	GCGC	1 cut(s)	131
Kpn2I	TCCGGA	1 cut(s)	143
KpnI	GGTACC	1 cut(s)	921
Kzo9I	GATC	3 cut(s)	346, 505, 804
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	6 cut(s)	24, 323, 437, 562, 665, 811
Lsp1109I	GCAGC	1 cut(s)	712
LweI	GCATC	3 cut(s)	118, 448, 568
MabI	ACCWGGT	1 cut(s)	248
MaeI	CTAG	3 cut(s)	360, 554, 797
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	3 cut(s)	445, 511, 934
MalI	GATC	3 cut(s)	348, 507, 806
MboI	GATC	3 cut(s)	346, 505, 804
MboII	GAAGA	3 cut(s)	112, 803, 882
MfeI	CAATTG	1 cut(s)	717
MflI	RGATCY	2 cut(s)	346, 505
MhlI	GDGCHC	3 cut(s)	222, 378, 609
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	408, 600, 717
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	297
MmeI	TCCRAC	1 cut(s)	58
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	650, 687
MslI	CAYNNNNRTG	1 cut(s)	766
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	3 cut(s)	144, 243, 509
MspR9I	CCNGG	3 cut(s)	212, 250, 809
MunI	CAATTG	1 cut(s)	717
MvaI	CCWGG	3 cut(s)	212, 250, 809
MwoI	GCNNNNNNNGC	9 cut(s)	25, 81, 221, 230, 239, 587, 620, 722, 848
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	3 cut(s)	346, 505, 804
NlaIII	CATG	4 cut(s)	10, 287, 292, 497
NlaIV	GGNNCC	4 cut(s)	247, 348, 507, 919
NmeAIII	GCCGAG	2 cut(s)	94, 754
NmuCI	GTSAC	2 cut(s)	511, 934
NspI	RCATGY	1 cut(s)	287
PaeI	GCATGC	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	125
PfeI	GAWTC	3 cut(s)	163, 257, 292
PflMI	CCANNNNNTGG	2 cut(s)	12, 838
PfoI	TCCNGGA	1 cut(s)	807
PkrI	GCNGC	2 cut(s)	235, 727
PleI	GAGTC	1 cut(s)	297
PmaCI	CACGTG	1 cut(s)	610
PmlI	CACGTG	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	297
Ppu21I	YACGTR	1 cut(s)	610
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	3 cut(s)	210, 248, 807
PspCI	CACGTG	1 cut(s)	610
PspEI	GGTNACC	1 cut(s)	511
PspGI	CCWGG	3 cut(s)	210, 248, 807
PspN4I	GGNNCC	4 cut(s)	247, 348, 507, 919
PspPI	GGNCC	4 cut(s)	266, 363, 771, 829
PsuI	RGATCY	2 cut(s)	346, 505
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	3 cut(s)	47, 760, 919
RsaNI	GTAC	3 cut(s)	46, 759, 918
RseI	CAYNNNNRTG	1 cut(s)	766
SacI	GAGCTC	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	650, 687
SatI	GCNGC	2 cut(s)	234, 726
Sau3AI	GATC	3 cut(s)	346, 505, 804
Sau96I	GGNCC	4 cut(s)	266, 363, 771, 829
SchI	GAGTC	1 cut(s)	297
ScrFI	CCNGG	3 cut(s)	212, 250, 809
SduI	GDGCHC	3 cut(s)	222, 378, 609
SexAI	ACCWGGT	1 cut(s)	248
SfaNI	GCATC	3 cut(s)	118, 448, 568
SinI	GGWCC	3 cut(s)	266, 771, 829
SmiMI	CAYNNNNRTG	1 cut(s)	766
SmlI	CTYRAG	2 cut(s)	377, 517
SmoI	CTYRAG	2 cut(s)	377, 517
SpeI	ACTAGT	1 cut(s)	796
SphI	GCATGC	1 cut(s)	287
Sse9I	AATT	3 cut(s)	408, 600, 717
SsiI	CCGC	7 cut(s)	38, 51, 57, 82, 137, 170, 234
SspMI	CTAG	3 cut(s)	360, 554, 797
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	210, 248, 807
TaaI	ACNGT	5 cut(s)	45, 655, 673, 692, 934
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	3 cut(s)	88, 161, 558
TaqII	GACCGA	1 cut(s)	817
TasI	AATT	3 cut(s)	408, 600, 717
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	3 cut(s)	163, 257, 292
Tru1I	TTAA	2 cut(s)	650, 687
Tru9I	TTAA	2 cut(s)	650, 687
TseFI	GTSAC	2 cut(s)	511, 934
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	2 cut(s)	511, 934
TspDTI	ATGAA	2 cut(s)	305, 482
TspGWI	ACGGA	2 cut(s)	147, 445
Van91I	CCANNNNNTGG	2 cut(s)	12, 838
VpaK11BI	GGWCC	3 cut(s)	266, 771, 829
XagI	CCTNNNNNAGG	1 cut(s)	864
XapI	RAATTY	1 cut(s)	408
XceI	RCATGY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	839
XspI	CTAG	3 cut(s)	360, 554, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.