Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003217

Physical Location & Seq

Genomic Coordinates Forward (+)

18828445 .. 18831322

Gene Structure 2878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G169300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCCTTGGCTTTGAAGCTCCTGAAGCAACTTCGAGGACCGTCCACCACCACCTCTACAATTCTCTACCGCAATCTTAGACCTCGGTTCTCGAACCTGCGTAGTACCATTAGGCTCTTCTCAGATCCTCCTCTCTCCGAGCCCCTTACCATTCCGCCGCATCAAAAACCTCATTCTCCTTCTCCGTCGTCGTTGAATCAGTACGAGCTCGCTAAGTTCGCCGCCATTGCTGAAACCTGGTGGGATTCTGAAGGGCCATTCAAACCATTGCATCAGCTGAATCCTACAAGACTTGCTTTCATTCGCTCCACGCTTTGCCGACATTTCGGGAGGGATCCCTTATCCCCGAGGCCCTTCGAAGGGCTCAAATTTGTTGATGTTGGCTGTGGTGGTGGAATTGTTTCTGAGCCTTTAGCTCGACTGGGAGCTACTGTGATGGGAGTTGATGCTGTCGAGAAAAATATCAAGATAGCACGCCTTCATGCTGATTTGGATCCATTGACTTCTTCAATTGAATATCGTTGCACAACAGCTGAAAAGCTAGTTGAGGAACAGAAGAATTTTGATGCTGTGTTTGCTTTAGAGGTAATTGAGCACGTAGCAGACCCTGCTGAATTCTGCAAGTCTCTGGCAGCCTTGACTGTTCCTGGTGGAGCTACCGTTATTTCAACTATCAATCGTTCCATGAGAGCATATGCCACTGCCATTGTTGCAGCAGAGTATCTCCTCCACTGGCTTCCGAAAGGTACACATCAATGGTCCAGTTTTCTTACTCCTGAAGAGCTAGCCCTGATCCTGGAGCGTGCTTCTATTTCAGTGCAAGAGATGGCTGGGTTTGTGTACAACCCTTTGACAGGAAGATGGTCTCTATCTGATGATGTTAATGTAAATTTCATCGCTTATGCTACCAAAATAAAAACAGCAAATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

311

Amino Acids

34.27

Weight (kDa)

8.3

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30920 AT2G30920
fragaria_vesca	FvH4_6g37760
malus_domestica	MD09G1156300.v1.1 MD17G1142800.v1.1
prunus_persica	Prupe.3G169300_v2.0.a1
pyrus_communis	pycom17g13580
rosa_chinensis	RchiOBHm_Chr2g0150821 RchiOBHm_Chr4g0446711 RchiOBHm_Chr7g0218911
rosa_laevigata	RLG00000002318 RLG00000002325 RLG00000002354 RLG00000005638 RLG00000020509
rosa_multiflora	Rmu_sc0001753.1_g000039 Rmu_sc0003823.1_g000004
rosa_roxburghii	Rroxscaffold_3G00240410
rosa_rugosa	Rorug02G0422600 Rorug04G0373900 Rorug07G0179700
rosa_samantha	Rh2AG482800 Rh2BG495400 Rh2CG469100 Rh2DG506200 Rh3BG339500 Rh4AG435400 Rh4BG444300 Rh4CG461600 Rh4DG443200 Rh7AG322900 Rh7BG314000 Rh7CG339700 Rh7DG320100
rosa_wichuraiana	Rw2G039570 Rw4G037220 Rw7G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	931
Acc36I	ACCTGC	1 cut(s)	105
AciI	CCGC	4 cut(s)	70, 155, 158, 222
AclWI	GGATC	6 cut(s)	119, 329, 342, 488, 501, 787
AcsI	RAATTY	5 cut(s)	368, 559, 614, 889, 925
AcuI	CTGAAG	3 cut(s)	44, 270, 798
AfaI	GTAC	4 cut(s)	106, 203, 748, 842
AfiI	CCNNNNNNNGG	4 cut(s)	359, 360, 796, 854
AgsI	TTSAA	6 cut(s)	16, 196, 262, 510, 515, 669
AjnI	CCWGG	3 cut(s)	236, 646, 795
AluBI	AGCT	9 cut(s)	19, 208, 277, 416, 428, 533, 541, 656, 784
AluI	AGCT	9 cut(s)	19, 208, 277, 416, 428, 533, 541, 656, 784
Alw21I	GWGCWC	2 cut(s)	210, 597
Alw26I	GTCTC	2 cut(s)	630, 870
AlwI	GGATC	6 cut(s)	119, 329, 342, 488, 501, 787
AlwNI	CAGNNNCTG	1 cut(s)	608
Ama87I	CYCGRG	1 cut(s)	346
AoxI	GGCC	3 cut(s)	3, 254, 350
ApeKI	GCWGC	2 cut(s)	632, 713
ApoI	RAATTY	5 cut(s)	368, 559, 614, 889, 925
Asp700I	GAANNNNTTC	1 cut(s)	400
AspS9I	GGNCC	4 cut(s)	38, 254, 351, 759
AsuII	TTCGAA	1 cut(s)	357
AsuNHI	GCTAGC	1 cut(s)	784
AvaI	CYCGRG	1 cut(s)	346
AvaII	GGWCC	2 cut(s)	38, 759
BamHI	GGATCC	2 cut(s)	334, 493
BanII	GRGCYC	3 cut(s)	144, 210, 366
Bbv12I	GWGCWC	2 cut(s)	210, 597
BbvI	GCAGC	2 cut(s)	644, 725
BccI	CCATC	3 cut(s)	430, 820, 855
BciT130I	CCWGG	3 cut(s)	238, 648, 797
BcoDI	GTCTC	2 cut(s)	630, 870
BfaI	CTAG	2 cut(s)	542, 785
BfuAI	ACCTGC	1 cut(s)	105
BisI	GCNGC	4 cut(s)	158, 222, 633, 714
BlsI	GCNGC	4 cut(s)	159, 223, 634, 715
Bme1390I	CCNGG	3 cut(s)	238, 648, 797
Bme18I	GGWCC	2 cut(s)	38, 759
BmeT110I	CYCGRG	1 cut(s)	346
BmgT120I	GGNCC	4 cut(s)	38, 254, 351, 759
BmiI	GGNNCC	2 cut(s)	336, 495
BmrFI	CCNGG	3 cut(s)	238, 648, 797
BmrI	ACTGGG	1 cut(s)	431
BmsI	GCATC	4 cut(s)	169, 280, 436, 556
BmtI	GCTAGC	1 cut(s)	788
BmuI	ACTGGG	1 cut(s)	431
BpmI	CTGGAG	1 cut(s)	818
Bpu14I	TTCGAA	1 cut(s)	357
BsaAI	YACGTR	1 cut(s)	598
BsaBI	GATNNNNATC	1 cut(s)	492
BsaI	GGTCTC	1 cut(s)	870
BsaJI	CCNNGG	3 cut(s)	6, 83, 347
BsaXI	ACNNNNNCTCC	4 cut(s)	417, 447, 645, 675
Bsc4I	CCNNNNNNNGG	4 cut(s)	359, 360, 796, 854
Bse1I	ACTGG	3 cut(s)	426, 737, 762
Bse3DI	GCAATG	2 cut(s)	225, 266
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	3 cut(s)	238, 648, 797
BseDI	CCNNGG	3 cut(s)	6, 83, 347
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	4 cut(s)	359, 360, 796, 854
BseMI	GCAATG	2 cut(s)	225, 266
BseMII	CTCAG	2 cut(s)	135, 396
BseNI	ACTGG	3 cut(s)	426, 737, 762
BseRI	GAGGAG	2 cut(s)	120, 716
BseXI	GCAGC	2 cut(s)	644, 725
BseYI	CCCAGC	1 cut(s)	830
BshFI	GGCC	3 cut(s)	5, 256, 352
BsiHKAI	GWGCWC	2 cut(s)	210, 597
BsiHKCI	CYCGRG	1 cut(s)	346
BslI	CCNNNNNNNGG	4 cut(s)	359, 360, 796, 854
BsmAI	GTCTC	2 cut(s)	630, 870
BsnI	GGCC	3 cut(s)	5, 256, 352
Bso31I	GGTCTC	1 cut(s)	870
BsoBI	CYCGRG	1 cut(s)	346
Bsp119I	TTCGAA	1 cut(s)	357
Bsp1286I	GDGCHC	4 cut(s)	144, 210, 366, 597
Bsp1407I	TGTACA	1 cut(s)	840
Bsp143I	GATC	4 cut(s)	124, 334, 493, 792
BspACI	CCGC	4 cut(s)	70, 155, 158, 222
BspANI	GGCC	3 cut(s)	5, 256, 352
BspCNI	CTCAG	2 cut(s)	134, 397
BspLI	GGNNCC	2 cut(s)	336, 495
BspMI	ACCTGC	1 cut(s)	105
BspOI	GCTAGC	1 cut(s)	788
BspPI	GGATC	6 cut(s)	119, 329, 342, 488, 501, 787
BspQI	GCTCTTC	2 cut(s)	122, 774
BspT104I	TTCGAA	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	870
BsrDI	GCAATG	2 cut(s)	225, 266
BsrGI	TGTACA	1 cut(s)	840
BsrI	ACTGG	3 cut(s)	426, 737, 762
BssECI	CCNNGG	3 cut(s)	6, 83, 347
BssMI	GATC	4 cut(s)	124, 334, 493, 792
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	3 cut(s)	238, 648, 797
Bst4CI	ACNGT	4 cut(s)	42, 433, 643, 661
Bst6I	CTCTTC	2 cut(s)	122, 774
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstAUI	TGTACA	1 cut(s)	840
BstBAI	YACGTR	1 cut(s)	598
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	4 cut(s)	210, 475, 786, 804
BstDEI	CTNAG	4 cut(s)	77, 121, 213, 405
BstENI	CCTNNNNNAGG	1 cut(s)	852
BstKTI	GATC	4 cut(s)	127, 337, 496, 795
BstMAI	GTCTC	2 cut(s)	630, 870
BstMBI	GATC	4 cut(s)	124, 334, 493, 792
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 218, 227, 575, 608, 710
BstNI	CCWGG	3 cut(s)	238, 648, 797
BstSCI	CCNGG	3 cut(s)	236, 646, 795
BstV1I	GCAGC	2 cut(s)	644, 725
BstX2I	RGATCY	3 cut(s)	124, 334, 493
BstYI	RGATCY	3 cut(s)	124, 334, 493
BsuRI	GGCC	3 cut(s)	5, 256, 352
BtgZI	GCGATG	1 cut(s)	880
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	3 cut(s)	699, 730, 822
BveI	ACCTGC	1 cut(s)	105
Cac8I	GCNNGC	4 cut(s)	210, 475, 786, 804
CaiI	CAGNNNCTG	1 cut(s)	608
Cfr13I	GGNCC	4 cut(s)	38, 254, 351, 759
CsiI	ACCWGGT	1 cut(s)	236
Csp6I	GTAC	4 cut(s)	105, 202, 747, 841
CspCI	CAANNNNNGTGG	2 cut(s)	688, 723
CviAII	CATG	2 cut(s)	482, 685
CviQI	GTAC	4 cut(s)	105, 202, 747, 841
DdeI	CTNAG	4 cut(s)	77, 121, 213, 405
DpnI	GATC	4 cut(s)	126, 336, 495, 794
DpnII	GATC	4 cut(s)	124, 334, 493, 792
Eam1104I	CTCTTC	2 cut(s)	122, 774
EarI	CTCTTC	2 cut(s)	122, 774
EciI	GGCGGA	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	3 cut(s)	144, 210, 366
Eco31I	GGTCTC	1 cut(s)	870
Eco47I	GGWCC	2 cut(s)	38, 759
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	3 cut(s)	44, 270, 798
Eco88I	CYCGRG	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	208
EcoNI	CCTNNNNNAGG	1 cut(s)	852
EcoO109I	RGGNCCY	1 cut(s)	351
EcoRI	GAATTC	1 cut(s)	614
EcoRII	CCWGG	3 cut(s)	236, 646, 795
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	3 cut(s)	144, 210, 366
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	485, 688
FaiI	YATR	6 cut(s)	483, 686, 694, 696, 903, 931
FalI	AAGNNNNNCTT	2 cut(s)	280, 312
FatI	CATG	2 cut(s)	481, 684
FauNDI	CATATG	1 cut(s)	694
Fnu4HI	GCNGC	4 cut(s)	158, 222, 633, 714
FriOI	GRGCYC	3 cut(s)	144, 210, 366
Fsp4HI	GCNGC	4 cut(s)	158, 222, 633, 714
FspBI	CTAG	2 cut(s)	542, 785
GluI	GCNGC	4 cut(s)	158, 222, 633, 714
GsaI	CCCAGC	1 cut(s)	834
GsuI	CTGGAG	1 cut(s)	818
HaeIII	GGCC	3 cut(s)	5, 256, 352
Hin1II	CATG	2 cut(s)	485, 688
HinfI	GANTC	3 cut(s)	196, 245, 280
Hpy166II	GTNNAC	3 cut(s)	45, 749, 841
Hpy188I	TCNGA	6 cut(s)	124, 139, 250, 406, 741, 874
Hpy188III	TCNNGA	6 cut(s)	22, 91, 328, 454, 466, 776
Hpy8I	GTNNAC	3 cut(s)	45, 749, 841
Hpy99I	CGWCG	2 cut(s)	190, 193
HpyAV	CCTTC	5 cut(s)	189, 245, 353, 364, 488
HpyCH4III	ACNGT	4 cut(s)	42, 433, 643, 661
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	5 cut(s)	271, 525, 621, 713, 820
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 218, 227, 575, 608, 710
HpyF3I	CTNAG	4 cut(s)	77, 121, 213, 405
HpySE526I	ACGT	1 cut(s)	597
Hsp92II	CATG	2 cut(s)	485, 688
Kzo9I	GATC	4 cut(s)	124, 334, 493, 792
LguI	GCTCTTC	2 cut(s)	122, 774
LmnI	GCTCC	5 cut(s)	24, 311, 425, 653, 799
Lsp1109I	GCAGC	2 cut(s)	644, 725
LweI	GCATC	4 cut(s)	169, 280, 436, 556
MabI	ACCWGGT	1 cut(s)	236
MaeI	CTAG	2 cut(s)	542, 785
MaeII	ACGT	1 cut(s)	597
MalI	GATC	4 cut(s)	126, 336, 495, 794
MboI	GATC	4 cut(s)	124, 334, 493, 792
MboII	GAAGA	5 cut(s)	109, 498, 568, 791, 870
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	3 cut(s)	124, 334, 493
MhlI	GDGCHC	4 cut(s)	144, 210, 366, 597
MluCI	AATT	9 cut(s)	60, 368, 396, 510, 559, 588, 614, 889, 925
MroXI	GAANNNNTTC	1 cut(s)	400
MseI	TTAA	1 cut(s)	882
MslI	CAYNNNNRTG	1 cut(s)	754
MspA1I	CMGCKG	2 cut(s)	277, 533
MspR9I	CCNGG	3 cut(s)	238, 648, 797
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	3 cut(s)	238, 648, 797
MwoI	GCNNNNNNNGC	6 cut(s)	25, 218, 227, 575, 608, 710
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	4 cut(s)	124, 334, 493, 792
NheI	GCTAGC	1 cut(s)	784
NlaIII	CATG	2 cut(s)	485, 688
NlaIV	GGNNCC	2 cut(s)	336, 495
NspV	TTCGAA	1 cut(s)	357
PciSI	GCTCTTC	2 cut(s)	122, 774
PdmI	GAANNNNTTC	1 cut(s)	400
PfeI	GAWTC	3 cut(s)	196, 245, 280
PfoI	TCCNGGA	1 cut(s)	795
PkrI	GCNGC	4 cut(s)	159, 223, 634, 715
Ppu21I	YACGTR	1 cut(s)	598
PsiI	TTATAA	1 cut(s)	931
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	3 cut(s)	236, 646, 795
PspFI	CCCAGC	1 cut(s)	830
PspGI	CCWGG	3 cut(s)	236, 646, 795
PspN4I	GGNNCC	2 cut(s)	336, 495
PspPI	GGNCC	4 cut(s)	38, 254, 351, 759
PstNI	CAGNNNCTG	1 cut(s)	608
PsuI	RGATCY	3 cut(s)	124, 334, 493
PvuII	CAGCTG	2 cut(s)	277, 533
RsaI	GTAC	4 cut(s)	106, 203, 748, 842
RsaNI	GTAC	4 cut(s)	105, 202, 747, 841
RseI	CAYNNNNRTG	1 cut(s)	754
SacI	GAGCTC	1 cut(s)	210
SapI	GCTCTTC	2 cut(s)	122, 774
SaqAI	TTAA	1 cut(s)	882
SatI	GCNGC	4 cut(s)	158, 222, 633, 714
Sau3AI	GATC	4 cut(s)	124, 334, 493, 792
Sau96I	GGNCC	4 cut(s)	38, 254, 351, 759
ScrFI	CCNGG	3 cut(s)	238, 648, 797
SduI	GDGCHC	4 cut(s)	144, 210, 366, 597
SexAI	ACCWGGT	1 cut(s)	236
SfaNI	GCATC	4 cut(s)	169, 280, 436, 556
SfuI	TTCGAA	1 cut(s)	357
SinI	GGWCC	2 cut(s)	38, 759
SmiMI	CAYNNNNRTG	1 cut(s)	754
Sse9I	AATT	9 cut(s)	60, 368, 396, 510, 559, 588, 614, 889, 925
SsiI	CCGC	4 cut(s)	70, 155, 158, 222
SspMI	CTAG	2 cut(s)	542, 785
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	3 cut(s)	236, 646, 795
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	4 cut(s)	42, 433, 643, 661
TaiI	ACGT	1 cut(s)	600
TaqI	TCGA	5 cut(s)	34, 92, 357, 418, 453
TasI	AATT	9 cut(s)	60, 368, 396, 510, 559, 588, 614, 889, 925
TatI	WGTACW	1 cut(s)	840
TauI	GCSGC	2 cut(s)	160, 224
TfiI	GAWTC	3 cut(s)	196, 245, 280
Tru1I	TTAA	1 cut(s)	882
Tru9I	TTAA	1 cut(s)	882
TscAI	CASTG	3 cut(s)	706, 737, 822
TseI	GCWGC	2 cut(s)	632, 713
TspDTI	ATGAA	3 cut(s)	289, 470, 883
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	3 cut(s)	706, 737, 822
VpaK11BI	GGWCC	2 cut(s)	38, 759
XagI	CCTNNNNNAGG	1 cut(s)	852
XapI	RAATTY	5 cut(s)	368, 559, 614, 889, 925
XmnI	GAANNNNTTC	1 cut(s)	400
XspI	CTAG	2 cut(s)	542, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.