Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003217

Physical Location & Seq

Genomic Coordinates Reverse (-)

72980311 .. 72983665

Gene Structure 3355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG506200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCCATGACTTGGAAGCTCCTGAAGCAACTCCGACCACCACCGTACACGGCCACCGCCTCTACGAGCCTCCACCGCCCTCGATTTCTCAACTTCCAAAATGCCACTCGGCTCTTCTCCGATCAGCCTCCGCTGCCTCCTCCCTCCGGAGAGCCTCCGCCGATTCCACCGCCTCAAAACTCTCACTCTCCCTCGCCGTCGTCGCTGAACCAGGCAGAGCTCGCTAAGTTCGCCGCCATTGCCGGAACCTGGTGGGATTCTGAAGGACCGTTCAAACCTTTGCATGCGATGAATCCTACAAGGCTCGCCTTCATTCGCTCAACGCTGTGTCGTCATTTCAGGAGGGATCCATTATCTGCTAGGCCATTTGAAGGGCTCAAGTTTATTGATGTTGGCTGTGGTGGTGGAATTCTGTCTGAGCCTTTAGCACGCATGGGAGCTTCTGTGACTGGAGTTGATGCTGTTGAGAAAAATATCAAGATAGCTCGCCTTCATGCTGACTTGGATCCGGTGACCTCAAGCATTGAATATCATTGCACAACAGCTGGTACTTTCTATTCTAGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

189

Amino Acids

20.65

Weight (kDa)

9.37

Isoelectric Point (pI)

52.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	114 - 162	1.2e-06	Methyltransferase domain
Methyltransf_31	PF13847	124 - 167	7.3e-06	Methyltransferase domain
Methyltransf_11	PF08241	129 - 182	9e-08	Methyltransferase domain
Methyltransf_25	PF13649	129 - 181	3e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30920 AT2G30920
fragaria_vesca	FvH4_6g37760
malus_domestica	MD09G1156300.v1.1 MD17G1142800.v1.1
prunus_persica	Prupe.3G169300_v2.0.a1
pyrus_communis	pycom17g13580
rosa_chinensis	RchiOBHm_Chr2g0150821 RchiOBHm_Chr4g0446711 RchiOBHm_Chr7g0218911
rosa_laevigata	RLG00000002318 RLG00000002325 RLG00000002354 RLG00000005638 RLG00000020509
rosa_multiflora	Rmu_sc0001753.1_g000039 Rmu_sc0003823.1_g000004
rosa_roxburghii	Rroxscaffold_3G00240410
rosa_rugosa	Rorug02G0422600 Rorug04G0373900 Rorug07G0179700
rosa_samantha	Rh2AG482800 Rh2BG495400 Rh2CG469100 Rh2DG506200 Rh3BG339500 Rh4AG435400 Rh4BG444300 Rh4CG461600 Rh4DG443200 Rh7AG322900 Rh7BG314000 Rh7CG339700 Rh7DG320100
rosa_wichuraiana	Rw2G039570 Rw4G037220 Rw7G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	12
AccIII	TCCGGA	1 cut(s)	146
AciI	CCGC	6 cut(s)	57, 76, 131, 158, 170, 234
AclWI	GGATC	4 cut(s)	341, 354, 500, 513
AcoI	YGGCCR	2 cut(s)	3, 51
AcsI	RAATTY	1 cut(s)	408
AcuI	CTGAAG	2 cut(s)	44, 282
AfaI	GTAC	2 cut(s)	47, 550
AfiI	CCNNNNNNNGG	4 cut(s)	12, 146, 249, 371
AgsI	TTSAA	3 cut(s)	274, 371, 527
AjnI	CCWGG	2 cut(s)	210, 248
AluBI	AGCT	5 cut(s)	19, 220, 440, 485, 545
AluI	AGCT	5 cut(s)	19, 220, 440, 485, 545
Alw21I	GWGCWC	1 cut(s)	222
AlwI	GGATC	4 cut(s)	341, 354, 500, 513
Aor13HI	TCCGGA	1 cut(s)	146
AoxI	GGCC	3 cut(s)	3, 51, 362
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	1 cut(s)	408
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	523
AvaII	GGWCC	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	346, 505
BanII	GRGCYC	2 cut(s)	222, 378
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	120
BceAI	ACGGC	2 cut(s)	66, 181
BciT130I	CCWGG	2 cut(s)	212, 250
BfaI	CTAG	2 cut(s)	360, 561
BisI	GCNGC	2 cut(s)	134, 234
BlsI	GCNGC	2 cut(s)	135, 235
Bme1390I	CCNGG	2 cut(s)	212, 250
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	3 cut(s)	247, 348, 507
BmrFI	CCNGG	2 cut(s)	212, 250
BmsI	GCATC	1 cut(s)	448
BpmI	CTGGAG	1 cut(s)	471
BpuEI	CTTGAG	2 cut(s)	362, 502
BsaWI	WCCGGW	2 cut(s)	146, 508
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 146, 249, 371
Bse1I	ACTGG	1 cut(s)	454
Bse3DI	GCAATG	2 cut(s)	237, 532
BseAI	TCCGGA	1 cut(s)	146
BseBI	CCWGG	2 cut(s)	212, 250
BseLI	CCNNNNNNNGG	4 cut(s)	12, 146, 249, 371
BseMI	GCAATG	2 cut(s)	237, 532
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	120
BshFI	GGCC	3 cut(s)	5, 53, 364
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	3 cut(s)	147, 243, 509
BslI	CCNNNNNNNGG	4 cut(s)	12, 146, 249, 371
BsnI	GGCC	3 cut(s)	5, 53, 364
Bsp1286I	GDGCHC	2 cut(s)	222, 378
Bsp13I	TCCGGA	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	121, 346, 505
BspACI	CCGC	6 cut(s)	57, 76, 131, 158, 170, 234
BspANI	GGCC	3 cut(s)	5, 53, 364
BspCNI	CTCAG	1 cut(s)	409
BspEI	TCCGGA	1 cut(s)	146
BspLI	GGNNCC	3 cut(s)	247, 348, 507
BspPI	GGATC	4 cut(s)	341, 354, 500, 513
BspQI	GCTCTTC	1 cut(s)	119
BsrDI	GCAATG	2 cut(s)	237, 532
BsrI	ACTGG	1 cut(s)	454
BssMI	GATC	3 cut(s)	121, 346, 505
Bst2UI	CCWGG	2 cut(s)	212, 250
Bst4CI	ACNGT	2 cut(s)	45, 270
Bst6I	CTCTTC	1 cut(s)	119
BstC8I	GCNNGC	5 cut(s)	222, 285, 306, 430, 487
BstDEI	CTNAG	2 cut(s)	225, 417
BstEII	GGTNACC	1 cut(s)	511
BstKTI	GATC	3 cut(s)	124, 349, 508
BstMBI	GATC	3 cut(s)	121, 346, 505
BstMWI	GCNNNNNNNGC	7 cut(s)	25, 75, 133, 202, 221, 230, 239
BstNI	CCWGG	2 cut(s)	212, 250
BstNSI	RCATGY	1 cut(s)	287
BstPI	GGTNACC	1 cut(s)	511
BstSCI	CCNGG	2 cut(s)	210, 248
BstV1I	GCAGC	1 cut(s)	120
BstX2I	RGATCY	2 cut(s)	346, 505
BstYI	RGATCY	2 cut(s)	346, 505
BsuRI	GGCC	3 cut(s)	5, 53, 364
BtgZI	GCGATG	1 cut(s)	302
Cac8I	GCNNGC	5 cut(s)	222, 285, 306, 430, 487
Cfr13I	GGNCC	1 cut(s)	266
CsiI	ACCWGGT	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	46, 549
CviAII	CATG	4 cut(s)	7, 284, 433, 494
CviQI	GTAC	2 cut(s)	46, 549
DdeI	CTNAG	2 cut(s)	225, 417
DpnI	GATC	3 cut(s)	123, 348, 507
DpnII	GATC	3 cut(s)	121, 346, 505
EaeI	YGGCCR	2 cut(s)	3, 51
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EciI	GGCGGA	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	2 cut(s)	222, 378
Eco47I	GGWCC	1 cut(s)	266
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	2 cut(s)	44, 282
Eco91I	GGTNACC	1 cut(s)	511
EcoICRI	GAGCTC	1 cut(s)	220
EcoO65I	GGTNACC	1 cut(s)	511
EcoRI	GAATTC	1 cut(s)	408
EcoRII	CCWGG	2 cut(s)	210, 248
EcoT38I	GRGCYC	2 cut(s)	222, 378
FaeI	CATG	4 cut(s)	10, 287, 436, 497
FaiI	YATR	5 cut(s)	8, 285, 434, 495, 568
FatI	CATG	4 cut(s)	6, 283, 432, 493
Fnu4HI	GCNGC	2 cut(s)	134, 234
FriOI	GRGCYC	2 cut(s)	222, 378
Fsp4HI	GCNGC	2 cut(s)	134, 234
FspBI	CTAG	2 cut(s)	360, 561
GluI	GCNGC	2 cut(s)	134, 234
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	3 cut(s)	5, 53, 364
HapII	CCGG	3 cut(s)	147, 243, 509
Hin1II	CATG	4 cut(s)	10, 287, 436, 497
HinfI	GANTC	3 cut(s)	163, 257, 292
HpaII	CCGG	3 cut(s)	147, 243, 509
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	4 cut(s)	35, 121, 262, 418
Hpy188III	TCNNGA	4 cut(s)	22, 147, 340, 478
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	2 cut(s)	202, 205
HpyAV	CCTTC	4 cut(s)	257, 319, 365, 500
HpyCH4III	ACNGT	2 cut(s)	45, 270
HpyCH4V	TGCA	2 cut(s)	283, 537
HpyF10VI	GCNNNNNNNGC	7 cut(s)	25, 75, 133, 202, 221, 230, 239
HpyF3I	CTNAG	2 cut(s)	225, 417
Hsp92II	CATG	4 cut(s)	10, 287, 436, 497
Kpn2I	TCCGGA	1 cut(s)	146
Kzo9I	GATC	3 cut(s)	121, 346, 505
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	2 cut(s)	24, 437
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	1 cut(s)	448
MabI	ACCWGGT	1 cut(s)	248
MaeI	CTAG	2 cut(s)	360, 561
MaeIII	GTNAC	2 cut(s)	445, 511
MalI	GATC	3 cut(s)	123, 348, 507
MboI	GATC	3 cut(s)	121, 346, 505
MboII	GAAGA	1 cut(s)	106
MflI	RGATCY	2 cut(s)	346, 505
MhlI	GDGCHC	2 cut(s)	222, 378
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	408
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	58
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	133, 545
MspI	CCGG	3 cut(s)	147, 243, 509
MspR9I	CCNGG	2 cut(s)	212, 250
MvaI	CCWGG	2 cut(s)	212, 250
MwoI	GCNNNNNNNGC	7 cut(s)	25, 75, 133, 202, 221, 230, 239
NdeII	GATC	3 cut(s)	121, 346, 505
NlaIII	CATG	4 cut(s)	10, 287, 436, 497
NlaIV	GGNNCC	3 cut(s)	247, 348, 507
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	445, 511
NspI	RCATGY	1 cut(s)	287
PaeI	GCATGC	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	119
PfeI	GAWTC	3 cut(s)	163, 257, 292
PflMI	CCANNNNNTGG	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	135, 235
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	210, 248
PspEI	GGTNACC	1 cut(s)	511
PspGI	CCWGG	2 cut(s)	210, 248
PspN4I	GGNNCC	3 cut(s)	247, 348, 507
PspPI	GGNCC	1 cut(s)	266
PsuI	RGATCY	2 cut(s)	346, 505
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	2 cut(s)	47, 550
RsaNI	GTAC	2 cut(s)	46, 549
SacI	GAGCTC	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	119
SatI	GCNGC	2 cut(s)	134, 234
Sau3AI	GATC	3 cut(s)	121, 346, 505
Sau96I	GGNCC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	212, 250
SduI	GDGCHC	2 cut(s)	222, 378
SetI	ASST	8 cut(s)	21, 222, 251, 280, 442, 487, 518, 547
SexAI	ACCWGGT	1 cut(s)	248
SfaNI	GCATC	1 cut(s)	448
SinI	GGWCC	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	377, 517
SmoI	CTYRAG	2 cut(s)	377, 517
SphI	GCATGC	1 cut(s)	287
Sse9I	AATT	1 cut(s)	408
SsiI	CCGC	6 cut(s)	57, 76, 131, 158, 170, 234
SspMI	CTAG	2 cut(s)	360, 561
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	210, 248
TaaI	ACNGT	2 cut(s)	45, 270
TaqI	TCGA	1 cut(s)	82
TasI	AATT	1 cut(s)	408
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	3 cut(s)	163, 257, 292
TseFI	GTSAC	2 cut(s)	445, 511
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	2 cut(s)	445, 511
TspDTI	ATGAA	4 cut(s)	301, 305, 482, 555
Van91I	CCANNNNNTGG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	408
XceI	RCATGY	1 cut(s)	287
XspI	CTAG	2 cut(s)	360, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.