Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001753.1

Orthogroup ID

OG0003217

Physical Location & Seq

Genomic Coordinates Forward (+)

177082 .. 180490

Gene Structure 3409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001753.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggcttggaagctcctgaagcaactccgaccgccaccgtacaccgccaccgcctctgcgagcctccaccgccctcgatttctcaacttccataatgccactcggctcttctccgatgcgcctcctctctccggagagcctcctccgtcgattccaccgcctcaaaaccctcactctccctcgccgtcgtctctgaaccaggcagagctagctaagttcgccgccattgccggaacctggtgggattctgaaggaccattcaaacctttgcatgccatgaatcctacaagactcgccttcattcgctccacgctgtgtcgtcatttcaagagggatccattatctgctaggccctttgaagggctcaagtttcttgatgttggctgtggcggtggaattctgtctgagcctttagcacggatgggggcttctgtaacgggagttgatgctgtagataaaaatatcaagatagctcgccttcatgctgacttggatccggtgacctcaagcattgaatatcattgcacaacagctgaaaaactagtcgaggagcagaggagttttgatgctgtgtttgctttagaggtaattgagcacgtggcaaatcctgctgagttctgcaaatctctgtctgccttaactgttcctgatggagctaccgtgatttcaactattaaccgttctatgagagcatatgctactgcaattgttgctgccgagtatctcctccattggcttcctaaagggacacatcaatggtctagtttccttactcctgaagaactagtcttgattctggagcgtgcttctatttcggtccaagagatggctggatttgcatacaaccctttgacaggaagatggtttatatctgacgatgttagtgtaaactttattgcttatgggaccaaaacagaaacagtcactttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

310

Amino Acids

34.0

Weight (kDa)

6.55

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30920 AT2G30920
fragaria_vesca	FvH4_6g37760
malus_domestica	MD09G1156300.v1.1 MD17G1142800.v1.1
prunus_persica	Prupe.3G169300_v2.0.a1
pyrus_communis	pycom17g13580
rosa_chinensis	RchiOBHm_Chr2g0150821 RchiOBHm_Chr4g0446711 RchiOBHm_Chr7g0218911
rosa_laevigata	RLG00000002318 RLG00000002325 RLG00000002354 RLG00000005638 RLG00000020509
rosa_multiflora	Rmu_sc0001753.1_g000039 Rmu_sc0003823.1_g000004
rosa_roxburghii	Rroxscaffold_3G00240410
rosa_rugosa	Rorug02G0422600 Rorug04G0373900 Rorug07G0179700
rosa_samantha	Rh2AG482800 Rh2BG495400 Rh2CG469100 Rh2DG506200 Rh3BG339500 Rh4AG435400 Rh4BG444300 Rh4CG461600 Rh4DG443200 Rh7AG322900 Rh7BG314000 Rh7CG339700 Rh7DG320100
rosa_wichuraiana	Rw2G039570 Rw4G037220 Rw7G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	931
AccB7I	CCANNNNNTGG	1 cut(s)	826
AccIII	TCCGGA	1 cut(s)	131
AciI	CCGC	7 cut(s)	32, 45, 51, 70, 158, 222, 390
AclWI	GGATC	4 cut(s)	329, 342, 488, 501
AcsI	RAATTY	1 cut(s)	396
AcuI	CTGAAG	3 cut(s)	38, 270, 798
AcvI	CACGTG	1 cut(s)	598
AdeI	CACNNNGTG	1 cut(s)	315
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	6 cut(s)	131, 237, 359, 360, 826, 854
AgsI	TTSAA	5 cut(s)	262, 328, 359, 515, 669
AhlI	ACTAGT	2 cut(s)	541, 784
AjnI	CCWGG	2 cut(s)	198, 236
AluBI	AGCT	6 cut(s)	13, 208, 212, 473, 533, 656
AluI	AGCT	6 cut(s)	13, 208, 212, 473, 533, 656
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	4 cut(s)	329, 342, 488, 501
Aor13HI	TCCGGA	1 cut(s)	131
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	1 cut(s)	713
ApoI	RAATTY	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	4 cut(s)	254, 351, 817, 906
AsuHPI	GGTGA	1 cut(s)	511
AsuNHI	GCTAGC	1 cut(s)	208
AvaII	GGWCC	3 cut(s)	254, 817, 906
BamHI	GGATCC	2 cut(s)	334, 493
BanII	GRGCYC	1 cut(s)	366
BbrPI	CACGTG	1 cut(s)	598
Bbv12I	GWGCWC	1 cut(s)	597
BbvI	GCAGC	1 cut(s)	700
BccI	CCATC	4 cut(s)	415, 644, 820, 855
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	2 cut(s)	200, 238
BcoDI	GTCTC	1 cut(s)	195
BcuI	ACTAGT	2 cut(s)	541, 784
BfaI	CTAG	5 cut(s)	209, 348, 542, 762, 785
BfmI	CTRYAG	1 cut(s)	450
BisI	GCNGC	2 cut(s)	222, 714
BlsI	GCNGC	2 cut(s)	223, 715
Bme1390I	CCNGG	2 cut(s)	200, 238
Bme18I	GGWCC	3 cut(s)	254, 817, 906
BmgT120I	GGNCC	4 cut(s)	254, 351, 817, 906
BmiI	GGNNCC	4 cut(s)	235, 336, 495, 907
BmrFI	CCNGG	2 cut(s)	200, 238
BmsI	GCATC	3 cut(s)	106, 436, 556
BmtI	GCTAGC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	818
BpuEI	CTTGAG	2 cut(s)	350, 490
BsaAI	YACGTR	1 cut(s)	598
BsaWI	WCCGGW	2 cut(s)	131, 496
BsaXI	ACNNNNNCTCC	2 cut(s)	645, 675
Bsc4I	CCNNNNNNNGG	6 cut(s)	131, 237, 359, 360, 826, 854
Bse3DI	GCAATG	2 cut(s)	225, 520
BseAI	TCCGGA	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	200, 238
BseGI	GGATG	1 cut(s)	426
BseLI	CCNNNNNNNGG	6 cut(s)	131, 237, 359, 360, 826, 854
BseMI	GCAATG	2 cut(s)	225, 520
BseMII	CTCAG	2 cut(s)	396, 603
BseRI	GAGGAG	5 cut(s)	114, 132, 563, 571, 716
BseXI	GCAGC	1 cut(s)	700
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	352
BsiEI	CGRYCG	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	597
BsiSI	CCGG	3 cut(s)	132, 231, 497
BslFI	GGGAC	2 cut(s)	760, 919
BslI	CCNNNNNNNGG	6 cut(s)	131, 237, 359, 360, 826, 854
BsmAI	GTCTC	1 cut(s)	195
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	2 cut(s)	760, 919
BsnI	GGCC	1 cut(s)	352
Bsp1286I	GDGCHC	2 cut(s)	366, 597
Bsp13I	TCCGGA	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	334, 493
BspACI	CCGC	7 cut(s)	32, 45, 51, 70, 158, 222, 390
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	2 cut(s)	397, 604
BspEI	TCCGGA	1 cut(s)	131
BspLI	GGNNCC	4 cut(s)	235, 336, 495, 907
BspOI	GCTAGC	1 cut(s)	212
BspPI	GGATC	4 cut(s)	329, 342, 488, 501
BspQI	GCTCTTC	1 cut(s)	113
BsrDI	GCAATG	2 cut(s)	225, 520
BssMI	GATC	2 cut(s)	334, 493
Bst2UI	CCWGG	2 cut(s)	200, 238
Bst4CI	ACNGT	5 cut(s)	39, 643, 661, 680, 922
Bst6I	CTCTTC	1 cut(s)	113
BstAPI	GCANNNNNTGC	2 cut(s)	608, 710
BstBAI	YACGTR	1 cut(s)	598
BstC8I	GCNNGC	5 cut(s)	61, 210, 273, 475, 804
BstDEI	CTNAG	3 cut(s)	213, 405, 612
BstEII	GGTNACC	1 cut(s)	499
BstENI	CCTNNNNNAGG	1 cut(s)	852
BstF5I	GGATG	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	2 cut(s)	337, 496
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	2 cut(s)	334, 493
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	9 cut(s)	19, 69, 209, 218, 227, 575, 608, 710, 836
BstNI	CCWGG	2 cut(s)	200, 238
BstNSI	RCATGY	1 cut(s)	275
BstPI	GGTNACC	1 cut(s)	499
BstSCI	CCNGG	2 cut(s)	198, 236
BstSFI	CTRYAG	1 cut(s)	450
BstV1I	GCAGC	1 cut(s)	700
BstX2I	RGATCY	2 cut(s)	334, 493
BstYI	RGATCY	2 cut(s)	334, 493
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	426
Cac8I	GCNNGC	5 cut(s)	61, 210, 273, 475, 804
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	4 cut(s)	254, 351, 817, 906
CsiI	ACCWGGT	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	3 cut(s)	272, 277, 482
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	3 cut(s)	213, 405, 612
DpnI	GATC	2 cut(s)	336, 495
DpnII	GATC	2 cut(s)	334, 493
DraIII	CACNNNGTG	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	366
Eco47I	GGWCC	3 cut(s)	254, 817, 906
Eco57I	CTGAAG	3 cut(s)	38, 270, 798
Eco72I	CACGTG	1 cut(s)	598
Eco91I	GGTNACC	1 cut(s)	499
EcoNI	CCTNNNNNAGG	1 cut(s)	852
EcoO109I	RGGNCCY	1 cut(s)	351
EcoO65I	GGTNACC	1 cut(s)	499
EcoRI	GAATTC	1 cut(s)	396
EcoRII	CCWGG	2 cut(s)	198, 236
EcoT38I	GRGCYC	1 cut(s)	366
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	3 cut(s)	275, 280, 485
FaqI	GGGAC	2 cut(s)	760, 919
FatI	CATG	3 cut(s)	271, 276, 481
FauNDI	CATATG	1 cut(s)	694
Fnu4HI	GCNGC	2 cut(s)	222, 714
FokI	GGATG	1 cut(s)	433
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	2 cut(s)	222, 714
FspBI	CTAG	5 cut(s)	209, 348, 542, 762, 785
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	2 cut(s)	222, 714
GsuI	CTGGAG	1 cut(s)	818
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	3 cut(s)	132, 231, 497
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	3 cut(s)	275, 280, 485
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	5 cut(s)	151, 245, 280, 291, 793
HpaII	CCGG	3 cut(s)	132, 231, 497
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	2 cut(s)	42, 889
Hpy188I	TCNGA	6 cut(s)	29, 115, 195, 250, 406, 874
Hpy188III	TCNNGA	9 cut(s)	16, 132, 328, 374, 466, 647, 776, 790, 797
Hpy8I	GTNNAC	2 cut(s)	42, 889
Hpy99I	CGWCG	2 cut(s)	151, 190
HpyAV	CCTTC	4 cut(s)	245, 307, 353, 488
HpyCH4III	ACNGT	5 cut(s)	39, 643, 661, 680, 922
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	5 cut(s)	271, 525, 621, 704, 839
HpyF10VI	GCNNNNNNNGC	9 cut(s)	19, 69, 209, 218, 227, 575, 608, 710, 836
HpyF3I	CTNAG	3 cut(s)	213, 405, 612
HpySE526I	ACGT	1 cut(s)	597
Hsp92II	CATG	3 cut(s)	275, 280, 485
HspAI	GCGC	1 cut(s)	119
Kpn2I	TCCGGA	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	334, 493
LguI	GCTCTTC	1 cut(s)	113
LmnI	GCTCC	5 cut(s)	18, 311, 550, 653, 799
Lsp1109I	GCAGC	1 cut(s)	700
LweI	GCATC	3 cut(s)	106, 436, 556
MabI	ACCWGGT	1 cut(s)	236
MaeI	CTAG	5 cut(s)	209, 348, 542, 762, 785
MaeII	ACGT	1 cut(s)	597
MaeIII	GTNAC	3 cut(s)	433, 499, 922
MalI	GATC	2 cut(s)	336, 495
MboI	GATC	2 cut(s)	334, 493
MboII	GAAGA	3 cut(s)	100, 791, 870
MfeI	CAATTG	1 cut(s)	705
MflI	RGATCY	2 cut(s)	334, 493
MhlI	GDGCHC	2 cut(s)	366, 597
MluCI	AATT	3 cut(s)	396, 588, 705
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	52
MroI	TCCGGA	1 cut(s)	131
MseI	TTAA	2 cut(s)	638, 675
MslI	CAYNNNNRTG	1 cut(s)	754
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	3 cut(s)	132, 231, 497
MspR9I	CCNGG	2 cut(s)	200, 238
MunI	CAATTG	1 cut(s)	705
MvaI	CCWGG	2 cut(s)	200, 238
MwoI	GCNNNNNNNGC	9 cut(s)	19, 69, 209, 218, 227, 575, 608, 710, 836
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	2 cut(s)	334, 493
NheI	GCTAGC	1 cut(s)	208
NlaIII	CATG	3 cut(s)	275, 280, 485
NlaIV	GGNNCC	4 cut(s)	235, 336, 495, 907
NmeAIII	GCCGAG	2 cut(s)	82, 742
NmuCI	GTSAC	2 cut(s)	499, 922
NspI	RCATGY	1 cut(s)	275
PaeI	GCATGC	1 cut(s)	275
PciSI	GCTCTTC	1 cut(s)	113
PfeI	GAWTC	4 cut(s)	151, 245, 280, 793
PflMI	CCANNNNNTGG	1 cut(s)	826
PkrI	GCNGC	2 cut(s)	223, 715
PleI	GAGTC	1 cut(s)	285
PmaCI	CACGTG	1 cut(s)	598
PmlI	CACGTG	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	285
Ppu21I	YACGTR	1 cut(s)	598
PsiI	TTATAA	1 cut(s)	931
Psp6I	CCWGG	2 cut(s)	198, 236
PspCI	CACGTG	1 cut(s)	598
PspEI	GGTNACC	1 cut(s)	499
PspGI	CCWGG	2 cut(s)	198, 236
PspN4I	GGNNCC	4 cut(s)	235, 336, 495, 907
PspPI	GGNCC	4 cut(s)	254, 351, 817, 906
PsuI	RGATCY	2 cut(s)	334, 493
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	754
SapI	GCTCTTC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	638, 675
SatI	GCNGC	2 cut(s)	222, 714
Sau3AI	GATC	2 cut(s)	334, 493
Sau96I	GGNCC	4 cut(s)	254, 351, 817, 906
SchI	GAGTC	1 cut(s)	285
ScrFI	CCNGG	2 cut(s)	200, 238
SduI	GDGCHC	2 cut(s)	366, 597
SexAI	ACCWGGT	1 cut(s)	236
SfaNI	GCATC	3 cut(s)	106, 436, 556
SfcI	CTRYAG	1 cut(s)	450
SinI	GGWCC	3 cut(s)	254, 817, 906
SmiMI	CAYNNNNRTG	1 cut(s)	754
SmlI	CTYRAG	2 cut(s)	365, 505
SmoI	CTYRAG	2 cut(s)	365, 505
SpeI	ACTAGT	2 cut(s)	541, 784
SphI	GCATGC	1 cut(s)	275
Sse9I	AATT	3 cut(s)	396, 588, 705
SsiI	CCGC	7 cut(s)	32, 45, 51, 70, 158, 222, 390
SspMI	CTAG	5 cut(s)	209, 348, 542, 762, 785
StyD4I	CCNGG	2 cut(s)	198, 236
TaaI	ACNGT	5 cut(s)	39, 643, 661, 680, 922
TaiI	ACGT	1 cut(s)	600
TaqI	TCGA	3 cut(s)	76, 149, 546
TaqII	GACCGA	1 cut(s)	805
TasI	AATT	3 cut(s)	396, 588, 705
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	4 cut(s)	151, 245, 280, 793
Tru1I	TTAA	2 cut(s)	638, 675
Tru9I	TTAA	2 cut(s)	638, 675
TseFI	GTSAC	2 cut(s)	499, 922
TseI	GCWGC	1 cut(s)	713
Tsp45I	GTSAC	2 cut(s)	499, 922
TspDTI	ATGAA	3 cut(s)	289, 293, 470
TspGWI	ACGGA	2 cut(s)	135, 433
Van91I	CCANNNNNTGG	1 cut(s)	826
VpaK11BI	GGWCC	3 cut(s)	254, 817, 906
XagI	CCTNNNNNAGG	1 cut(s)	852
XapI	RAATTY	1 cut(s)	396
XceI	RCATGY	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	827
XspI	CTAG	5 cut(s)	209, 348, 542, 762, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.