Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003217

Physical Location & Seq

Genomic Coordinates Reverse (-)

63326601 .. 63329892

Gene Structure 3292 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG469100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGACCATGACTTGGAAGCTCCTGAAGCAACTCCGACCACCACCGTACACGGCCACCGCCTCTACGAGCCTCCACCGCCCTCGATTTCTCAACTTCCATAATGCCGCTCGGCTCTTCTCCGATCCGCCTCCTCCCTCCGGAGAGCCTCCGCCGATTCCACCGCCTCAAAACTCTCACTCTCCCTCGCCGTCGTCGCTGAACCAGGCAGAGCTCGCTAAGTTCGCCGCCATTGCCGGAACCTGGTGGGATTCTGAAGGACCGTTCAAACCTTTGCATGCGATGAATCCTACAAGGCTCGCCTTCATTCGCTCAACGCTGTGTCGTCATTTCAGGAGGGATCCATTATCTGCTAGGCCATTTGAAGGGCTCAAGTTTATTGATGTTGGCTGTGGTGGTGGAATTCTGTCTGAGCCTTTAGCACGGATGGGAGCCTCCGTAACGGGAGTTGATGCTATTGAGAAAAATATCAAGATAGCTCGCCTTCATGCTGACTTGGATCCGGTGACCTCAAGCATTGAATATCATTGCACAACAGCTGAAAAACTAGTCGACGAGCAGAGGAGTTTTGATGCTGTGTTTGCTTTAGAGGTAATTGAGCACGTGGCGAATCCTGCTGAGTTCTGCAAATCTCTGTCTGCCTTAACTGTTCCTGATGGAGCTACTGTGATTTCAACTATTAACCGTTCTATGAGAGCATATGCTACTGCGATTATTGCTGCCGAGTATCTCCTCCACTGGGTATCTATTTATTCCTTCACGTCTGCAGAAGTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

258

Amino Acids

28.28

Weight (kDa)

6.75

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	111 - 245	1.3e-17	Methyltransferase domain
Methyltransf_31	PF13847	121 - 227	2.4e-13	Methyltransferase domain
CMAS	PF02353	121 - 235	8.6e-07	Mycolic acid cyclopropane synthetase
PrmA	PF06325	123 - 226	1.6e-07	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_11	PF08241	126 - 222	7.3e-19	Methyltransferase domain
Methyltransf_25	PF13649	126 - 219	7e-15	Methyltransferase domain
Methyltransf_12	PF08242	126 - 219	9e-12	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30920 AT2G30920
fragaria_vesca	FvH4_6g37760
malus_domestica	MD09G1156300.v1.1 MD17G1142800.v1.1
prunus_persica	Prupe.3G169300_v2.0.a1
pyrus_communis	pycom17g13580
rosa_chinensis	RchiOBHm_Chr2g0150821 RchiOBHm_Chr4g0446711 RchiOBHm_Chr7g0218911
rosa_laevigata	RLG00000002318 RLG00000002325 RLG00000002354 RLG00000005638 RLG00000020509
rosa_multiflora	Rmu_sc0001753.1_g000039 Rmu_sc0003823.1_g000004
rosa_roxburghii	Rroxscaffold_3G00240410
rosa_rugosa	Rorug02G0422600 Rorug04G0373900 Rorug07G0179700
rosa_samantha	Rh2AG482800 Rh2BG495400 Rh2CG469100 Rh2DG506200 Rh3BG339500 Rh4AG435400 Rh4BG444300 Rh4CG461600 Rh4DG443200 Rh7AG322900 Rh7BG314000 Rh7CG339700 Rh7DG320100
rosa_wichuraiana	Rw2G039570 Rw4G037220 Rw7G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	12
AccBSI	CCGCTC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	549
AccIII	TCCGGA	1 cut(s)	137
AciI	CCGC	7 cut(s)	57, 76, 105, 125, 149, 161, 225
AclWI	GGATC	5 cut(s)	116, 332, 345, 491, 504
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	399
AcuI	CTGAAG	2 cut(s)	44, 273
AcvI	CACGTG	1 cut(s)	601
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	5 cut(s)	12, 137, 240, 362, 736
AgsI	TTSAA	4 cut(s)	265, 362, 518, 672
AhlI	ACTAGT	1 cut(s)	544
AjiI	CACGTC	1 cut(s)	759
AjnI	CCWGG	2 cut(s)	201, 239
AluBI	AGCT	5 cut(s)	19, 211, 476, 536, 659
AluI	AGCT	5 cut(s)	19, 211, 476, 536, 659
Alw21I	GWGCWC	2 cut(s)	213, 600
AlwI	GGATC	5 cut(s)	116, 332, 345, 491, 504
Aor13HI	TCCGGA	1 cut(s)	137
AoxI	GGCC	2 cut(s)	51, 353
ApeKI	GCWGC	1 cut(s)	716
ApoI	RAATTY	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	514
AvaII	GGWCC	1 cut(s)	257
BamHI	GGATCC	2 cut(s)	337, 496
BanII	GRGCYC	2 cut(s)	213, 369
BbrPI	CACGTG	1 cut(s)	601
Bbv12I	GWGCWC	2 cut(s)	213, 600
BbvI	GCAGC	1 cut(s)	703
BccI	CCATC	2 cut(s)	418, 647
BceAI	ACGGC	2 cut(s)	66, 172
BciT130I	CCWGG	2 cut(s)	203, 241
BcuI	ACTAGT	1 cut(s)	544
BfaI	CTAG	2 cut(s)	351, 545
BfmI	CTRYAG	1 cut(s)	762
BisI	GCNGC	3 cut(s)	105, 225, 717
BlsI	GCNGC	3 cut(s)	106, 226, 718
Bme1390I	CCNGG	2 cut(s)	203, 241
Bme18I	GGWCC	1 cut(s)	257
BmgBI	CACGTC	1 cut(s)	759
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	4 cut(s)	238, 339, 430, 498
BmrFI	CCNGG	2 cut(s)	203, 241
BmrI	ACTGGG	1 cut(s)	745
BmsI	GCATC	2 cut(s)	439, 559
BmuI	ACTGGG	1 cut(s)	745
BpuEI	CTTGAG	2 cut(s)	353, 493
BsaAI	YACGTR	1 cut(s)	601
BsaWI	WCCGGW	2 cut(s)	137, 499
BsaXI	ACNNNNNCTCC	4 cut(s)	420, 450, 648, 678
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 137, 240, 362, 736
Bse1I	ACTGG	1 cut(s)	740
Bse3DI	GCAATG	2 cut(s)	228, 523
BseAI	TCCGGA	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	203, 241
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	5 cut(s)	12, 137, 240, 362, 736
BseMI	GCAATG	2 cut(s)	228, 523
BseMII	CTCAG	2 cut(s)	399, 606
BseNI	ACTGG	1 cut(s)	740
BseRI	GAGGAG	3 cut(s)	120, 574, 719
BseXI	GCAGC	1 cut(s)	703
BshFI	GGCC	2 cut(s)	53, 355
BsiHKAI	GWGCWC	2 cut(s)	213, 600
BsiSI	CCGG	3 cut(s)	138, 234, 500
BslI	CCNNNNNNNGG	5 cut(s)	12, 137, 240, 362, 736
BsnI	GGCC	2 cut(s)	53, 355
Bsp1286I	GDGCHC	3 cut(s)	213, 369, 600
Bsp13I	TCCGGA	1 cut(s)	137
Bsp143I	GATC	3 cut(s)	121, 337, 496
BspACI	CCGC	7 cut(s)	57, 76, 105, 125, 149, 161, 225
BspANI	GGCC	2 cut(s)	53, 355
BspCNI	CTCAG	2 cut(s)	400, 607
BspEI	TCCGGA	1 cut(s)	137
BspLI	GGNNCC	4 cut(s)	238, 339, 430, 498
BspMAI	CTGCAG	1 cut(s)	766
BspPI	GGATC	5 cut(s)	116, 332, 345, 491, 504
BspQI	GCTCTTC	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	107
BsrDI	GCAATG	2 cut(s)	228, 523
BsrI	ACTGG	1 cut(s)	740
BssMI	GATC	3 cut(s)	121, 337, 496
Bst2UI	CCWGG	2 cut(s)	203, 241
Bst4CI	ACNGT	5 cut(s)	45, 261, 646, 664, 683
Bst6I	CTCTTC	1 cut(s)	119
BstBAI	YACGTR	1 cut(s)	601
BstC8I	GCNNGC	4 cut(s)	213, 276, 297, 478
BstDEI	CTNAG	3 cut(s)	216, 408, 615
BstEII	GGTNACC	1 cut(s)	502
BstF5I	GGATG	1 cut(s)	429
BstKTI	GATC	3 cut(s)	124, 340, 499
BstMBI	GATC	3 cut(s)	121, 337, 496
BstMWI	GCNNNNNNNGC	9 cut(s)	25, 75, 193, 212, 221, 230, 578, 611, 713
BstNI	CCWGG	2 cut(s)	203, 241
BstNSI	RCATGY	1 cut(s)	278
BstPI	GGTNACC	1 cut(s)	502
BstSCI	CCNGG	2 cut(s)	201, 239
BstSFI	CTRYAG	1 cut(s)	762
BstV1I	GCAGC	1 cut(s)	703
BstX2I	RGATCY	2 cut(s)	337, 496
BstYI	RGATCY	2 cut(s)	337, 496
BsuRI	GGCC	2 cut(s)	53, 355
BtgZI	GCGATG	1 cut(s)	293
BtrI	CACGTC	1 cut(s)	759
BtsCI	GGATG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	733
Cac8I	GCNNGC	4 cut(s)	213, 276, 297, 478
Cfr13I	GGNCC	1 cut(s)	257
CsiI	ACCWGGT	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	3 cut(s)	7, 275, 485
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	3 cut(s)	216, 408, 615
DpnI	GATC	3 cut(s)	123, 339, 498
DpnII	GATC	3 cut(s)	121, 337, 496
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EciI	GGCGGA	2 cut(s)	114, 138
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	2 cut(s)	213, 369
Eco47I	GGWCC	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	2 cut(s)	44, 273
Eco72I	CACGTG	1 cut(s)	601
Eco91I	GGTNACC	1 cut(s)	502
EcoICRI	GAGCTC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	502
EcoRI	GAATTC	1 cut(s)	399
EcoRII	CCWGG	2 cut(s)	201, 239
EcoT38I	GRGCYC	2 cut(s)	213, 369
FaeI	CATG	3 cut(s)	10, 278, 488
FaiI	YATR	7 cut(s)	8, 99, 276, 486, 689, 697, 699
FatI	CATG	3 cut(s)	6, 274, 484
FauNDI	CATATG	1 cut(s)	697
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	3 cut(s)	105, 225, 717
FokI	GGATG	1 cut(s)	436
FriOI	GRGCYC	2 cut(s)	213, 369
Fsp4HI	GCNGC	3 cut(s)	105, 225, 717
FspBI	CTAG	2 cut(s)	351, 545
GluI	GCNGC	3 cut(s)	105, 225, 717
HaeIII	GGCC	2 cut(s)	53, 355
HapII	CCGG	3 cut(s)	138, 234, 500
Hin1II	CATG	3 cut(s)	10, 278, 488
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	4 cut(s)	154, 248, 283, 607
HpaII	CCGG	3 cut(s)	138, 234, 500
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	2 cut(s)	48, 550
Hpy188I	TCNGA	4 cut(s)	35, 121, 253, 409
Hpy188III	TCNNGA	5 cut(s)	22, 138, 331, 469, 650
Hpy8I	GTNNAC	2 cut(s)	48, 550
Hpy99I	CGWCG	3 cut(s)	193, 196, 554
HpyAV	CCTTC	5 cut(s)	248, 310, 356, 491, 763
HpyCH4III	ACNGT	5 cut(s)	45, 261, 646, 664, 683
HpyCH4IV	ACGT	2 cut(s)	600, 758
HpyCH4V	TGCA	4 cut(s)	274, 528, 624, 764
HpyF10VI	GCNNNNNNNGC	9 cut(s)	25, 75, 193, 212, 221, 230, 578, 611, 713
HpyF3I	CTNAG	3 cut(s)	216, 408, 615
HpySE526I	ACGT	2 cut(s)	600, 758
Hsp92II	CATG	3 cut(s)	10, 278, 488
Kpn2I	TCCGGA	1 cut(s)	137
Kzo9I	GATC	3 cut(s)	121, 337, 496
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	3 cut(s)	24, 428, 656
Lsp1109I	GCAGC	1 cut(s)	703
LweI	GCATC	2 cut(s)	439, 559
MabI	ACCWGGT	1 cut(s)	239
MaeI	CTAG	2 cut(s)	351, 545
MaeII	ACGT	2 cut(s)	600, 758
MaeIII	GTNAC	2 cut(s)	436, 502
MalI	GATC	3 cut(s)	123, 339, 498
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	3 cut(s)	121, 337, 496
MboII	GAAGA	1 cut(s)	106
MflI	RGATCY	2 cut(s)	337, 496
MhlI	GDGCHC	3 cut(s)	213, 369, 600
MluCI	AATT	2 cut(s)	399, 591
MmeI	TCCRAC	1 cut(s)	58
MroI	TCCGGA	1 cut(s)	137
MseI	TTAA	3 cut(s)	641, 678, 775
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	3 cut(s)	138, 234, 500
MspR9I	CCNGG	2 cut(s)	203, 241
MvaI	CCWGG	2 cut(s)	203, 241
MwoI	GCNNNNNNNGC	9 cut(s)	25, 75, 193, 212, 221, 230, 578, 611, 713
NdeI	CATATG	1 cut(s)	697
NdeII	GATC	3 cut(s)	121, 337, 496
NlaIII	CATG	3 cut(s)	10, 278, 488
NlaIV	GGNNCC	4 cut(s)	238, 339, 430, 498
NmeAIII	GCCGAG	2 cut(s)	88, 745
NmuCI	GTSAC	1 cut(s)	502
NspI	RCATGY	1 cut(s)	278
PaeI	GCATGC	1 cut(s)	278
PciSI	GCTCTTC	1 cut(s)	119
PfeI	GAWTC	4 cut(s)	154, 248, 283, 607
PflMI	CCANNNNNTGG	1 cut(s)	12
PkrI	GCNGC	3 cut(s)	106, 226, 718
PmaCI	CACGTG	1 cut(s)	601
PmlI	CACGTG	1 cut(s)	601
Ppu21I	YACGTR	1 cut(s)	601
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	201, 239
PspCI	CACGTG	1 cut(s)	601
PspEI	GGTNACC	1 cut(s)	502
PspGI	CCWGG	2 cut(s)	201, 239
PspN4I	GGNNCC	4 cut(s)	238, 339, 430, 498
PspPI	GGNCC	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	766
PsuI	RGATCY	2 cut(s)	337, 496
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SacI	GAGCTC	1 cut(s)	213
SalI	GTCGAC	1 cut(s)	548
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	3 cut(s)	641, 678, 775
SatI	GCNGC	3 cut(s)	105, 225, 717
Sau3AI	GATC	3 cut(s)	121, 337, 496
Sau96I	GGNCC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	203, 241
SduI	GDGCHC	3 cut(s)	213, 369, 600
SexAI	ACCWGGT	1 cut(s)	239
SfaNI	GCATC	2 cut(s)	439, 559
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	368, 508
SmoI	CTYRAG	2 cut(s)	368, 508
SpeI	ACTAGT	1 cut(s)	544
SphI	GCATGC	1 cut(s)	278
Sse9I	AATT	2 cut(s)	399, 591
SsiI	CCGC	7 cut(s)	57, 76, 105, 125, 149, 161, 225
SspMI	CTAG	2 cut(s)	351, 545
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	201, 239
TaaI	ACNGT	5 cut(s)	45, 261, 646, 664, 683
TaiI	ACGT	2 cut(s)	603, 761
TaqI	TCGA	2 cut(s)	82, 549
TasI	AATT	2 cut(s)	399, 591
TauI	GCSGC	2 cut(s)	107, 227
TfiI	GAWTC	4 cut(s)	154, 248, 283, 607
Tru1I	TTAA	3 cut(s)	641, 678, 775
Tru9I	TTAA	3 cut(s)	641, 678, 775
TscAI	CASTG	1 cut(s)	740
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	1 cut(s)	716
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	3 cut(s)	292, 296, 473
TspGWI	ACGGA	2 cut(s)	424, 436
TspRI	CASTG	1 cut(s)	740
Van91I	CCANNNNNTGG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	399
XceI	RCATGY	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	549
XspI	CTAG	2 cut(s)	351, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.