Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003217

Physical Location & Seq

Genomic Coordinates Reverse (-)

72908196 .. 72910543

Gene Structure 2348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG435400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCTTGGAAGCTCCTGAAGCAACTCCGACCGCCACCGTACACCGCCACCGCCTCTGCGAGCCTCCACCGCCCTCGATTTCTCAACTTCCATAATGCCACTCGGCTCTTCTCCGATGCGCCTCCTCCCTCCGGAGAGCCTCCGCCGTCGATTCCACCGCCTCAAAACCCTCACTCTCCCTCGCCGTCGTCTCTGAACCAGGCAGAGCTCGCTAAGTTCGCCGCCATTGCCGGAACCTGGAGGGATCCATTATCTGCTAGGCCCTTTGAAGGGCTCAAGTTTCTTGATGTTGGCTGTGGTGGTGGAATTCTGTCTGAGCCTTTAGCACGGATGGGAGCTTCTGTAACGGGAGTTGATGCTGTGGATAAAAATATCAAGATAGCTCGCCTTCATGCTGACTTGGATCCGGTGACCTCAAGCATTGAATATCATTGCACAACAGCTGAAAAACTAGTTGAGGAGCAGAGGAGTTTTGATGCTGTGTTTGCTTTAGAGGTAATTGAGCACGTGGCAAATCCTGCTGAGTTCTGCAAATCTCTGTCTGCCTTAACTGTTCCTGATGGAGCTACCGTGATTTCAACTATTAACCGTTCTATGAGAGCATATGCTACTGCAATTGTTGCTGCCGAGTATCTCCTCCATTGGGTATTACAATCTCATTACACTGCTCTAAGAAATACTTCTGTACTTAGTTATCTTAGAGATTCCCATAAAATAAGTGATGTGTTGTTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

245

Amino Acids

26.7

Weight (kDa)

6.75

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	80 - 226	3e-19	Methyltransferase domain
Methyltransf_31	PF13847	90 - 200	1.2e-13	Methyltransferase domain
CMAS	PF02353	90 - 203	8.8e-08	Mycolic acid cyclopropane synthetase
PrmA	PF06325	92 - 195	1.2e-07	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_11	PF08241	95 - 191	1.2e-19	Methyltransferase domain
Methyltransf_25	PF13649	95 - 188	1.2e-15	Methyltransferase domain
Methyltransf_12	PF08242	95 - 188	3.1e-12	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30920 AT2G30920
fragaria_vesca	FvH4_6g37760
malus_domestica	MD09G1156300.v1.1 MD17G1142800.v1.1
prunus_persica	Prupe.3G169300_v2.0.a1
pyrus_communis	pycom17g13580
rosa_chinensis	RchiOBHm_Chr2g0150821 RchiOBHm_Chr4g0446711 RchiOBHm_Chr7g0218911
rosa_laevigata	RLG00000002318 RLG00000002325 RLG00000002354 RLG00000005638 RLG00000020509
rosa_multiflora	Rmu_sc0001753.1_g000039 Rmu_sc0003823.1_g000004
rosa_roxburghii	Rroxscaffold_3G00240410
rosa_rugosa	Rorug02G0422600 Rorug04G0373900 Rorug07G0179700
rosa_samantha	Rh2AG482800 Rh2BG495400 Rh2CG469100 Rh2DG506200 Rh3BG339500 Rh4AG435400 Rh4BG444300 Rh4CG461600 Rh4DG443200 Rh7AG322900 Rh7BG314000 Rh7CG339700 Rh7DG320100
rosa_wichuraiana	Rw2G039570 Rw4G037220 Rw7G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	131
AciI	CCGC	7 cut(s)	32, 45, 51, 70, 143, 158, 222
AclWI	GGATC	4 cut(s)	239, 252, 398, 411
AcsI	RAATTY	1 cut(s)	306
AcuI	CTGAAG	1 cut(s)	38
AcvI	CACGTG	1 cut(s)	508
AfaI	GTAC	2 cut(s)	41, 687
AfiI	CCNNNNNNNGG	5 cut(s)	131, 237, 269, 270, 643
AgsI	TTSAA	3 cut(s)	269, 425, 579
AhlI	ACTAGT	1 cut(s)	451
AjnI	CCWGG	2 cut(s)	198, 236
AluBI	AGCT	6 cut(s)	13, 208, 338, 383, 443, 566
AluI	AGCT	6 cut(s)	13, 208, 338, 383, 443, 566
Alw21I	GWGCWC	2 cut(s)	210, 507
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	4 cut(s)	239, 252, 398, 411
Aor13HI	TCCGGA	1 cut(s)	131
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	623
ApoI	RAATTY	1 cut(s)	306
Asp700I	GAANNNNTTC	1 cut(s)	679
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	261
AsuHPI	GGTGA	1 cut(s)	421
BamHI	GGATCC	2 cut(s)	244, 403
BanII	GRGCYC	2 cut(s)	210, 276
BbrPI	CACGTG	1 cut(s)	508
Bbv12I	GWGCWC	2 cut(s)	210, 507
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	2 cut(s)	325, 554
BceAI	ACGGC	2 cut(s)	130, 169
BciT130I	CCWGG	2 cut(s)	200, 238
BcoDI	GTCTC	1 cut(s)	195
BcuI	ACTAGT	1 cut(s)	451
BfaI	CTAG	2 cut(s)	258, 452
BisI	GCNGC	2 cut(s)	222, 624
BlsI	GCNGC	2 cut(s)	223, 625
Bme1390I	CCNGG	2 cut(s)	200, 238
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	3 cut(s)	235, 246, 405
BmrFI	CCNGG	2 cut(s)	200, 238
BmsI	GCATC	3 cut(s)	106, 346, 466
BpmI	CTGGAG	1 cut(s)	259
BpuEI	CTTGAG	2 cut(s)	260, 400
BsaAI	YACGTR	1 cut(s)	508
BsaWI	WCCGGW	2 cut(s)	131, 406
BsaXI	ACNNNNNCTCC	4 cut(s)	327, 357, 555, 585
Bsc4I	CCNNNNNNNGG	5 cut(s)	131, 237, 269, 270, 643
Bse3DI	GCAATG	2 cut(s)	225, 430
BseAI	TCCGGA	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	200, 238
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	5 cut(s)	131, 237, 269, 270, 643
BseMI	GCAATG	2 cut(s)	225, 430
BseMII	CTCAG	2 cut(s)	306, 513
BseRI	GAGGAG	4 cut(s)	114, 473, 481, 626
BseXI	GCAGC	1 cut(s)	610
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	262
BsiEI	CGRYCG	1 cut(s)	32
BsiHKAI	GWGCWC	2 cut(s)	210, 507
BsiSI	CCGG	3 cut(s)	132, 231, 407
BslI	CCNNNNNNNGG	5 cut(s)	131, 237, 269, 270, 643
BsmAI	GTCTC	1 cut(s)	195
BsmBI	CGTCTC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	262
Bsp1286I	GDGCHC	3 cut(s)	210, 276, 507
Bsp13I	TCCGGA	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	244, 403
BspACI	CCGC	7 cut(s)	32, 45, 51, 70, 143, 158, 222
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	2 cut(s)	307, 514
BspEI	TCCGGA	1 cut(s)	131
BspLI	GGNNCC	3 cut(s)	235, 246, 405
BspPI	GGATC	4 cut(s)	239, 252, 398, 411
BspQI	GCTCTTC	1 cut(s)	113
BsrDI	GCAATG	2 cut(s)	225, 430
BssMI	GATC	2 cut(s)	244, 403
Bst2UI	CCWGG	2 cut(s)	200, 238
Bst4CI	ACNGT	4 cut(s)	39, 553, 571, 590
Bst6I	CTCTTC	1 cut(s)	113
BstAPI	GCANNNNNTGC	2 cut(s)	518, 620
BstBAI	YACGTR	1 cut(s)	508
BstC8I	GCNNGC	3 cut(s)	61, 210, 385
BstDEI	CTNAG	6 cut(s)	213, 315, 522, 671, 689, 698
BstEII	GGTNACC	1 cut(s)	409
BstF5I	GGATG	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	2 cut(s)	247, 406
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	2 cut(s)	244, 403
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	8 cut(s)	19, 69, 209, 218, 227, 485, 518, 620
BstNI	CCWGG	2 cut(s)	200, 238
BstPI	GGTNACC	1 cut(s)	409
BstSCI	CCNGG	2 cut(s)	198, 236
BstV1I	GCAGC	1 cut(s)	610
BstX2I	RGATCY	2 cut(s)	244, 403
BstYI	RGATCY	2 cut(s)	244, 403
BsuRI	GGCC	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	336
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	1 cut(s)	663
Cac8I	GCNNGC	3 cut(s)	61, 210, 385
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	261
Csp6I	GTAC	2 cut(s)	40, 686
CviAII	CATG	1 cut(s)	392
CviQI	GTAC	2 cut(s)	40, 686
DdeI	CTNAG	6 cut(s)	213, 315, 522, 671, 689, 698
DpnI	GATC	2 cut(s)	246, 405
DpnII	GATC	2 cut(s)	244, 403
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
EciI	GGCGGA	1 cut(s)	132
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	2 cut(s)	210, 276
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	38
Eco72I	CACGTG	1 cut(s)	508
Eco91I	GGTNACC	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	261
EcoO65I	GGTNACC	1 cut(s)	409
EcoRI	GAATTC	1 cut(s)	306
EcoRII	CCWGG	2 cut(s)	198, 236
EcoT38I	GRGCYC	2 cut(s)	210, 276
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	1 cut(s)	395
FaiI	YATR	6 cut(s)	93, 393, 596, 604, 606, 711
FalI	AAGNNNNNCTT	2 cut(s)	664, 696
FatI	CATG	1 cut(s)	391
FauNDI	CATATG	1 cut(s)	604
Fnu4HI	GCNGC	2 cut(s)	222, 624
FokI	GGATG	1 cut(s)	343
FriOI	GRGCYC	2 cut(s)	210, 276
Fsp4HI	GCNGC	2 cut(s)	222, 624
FspBI	CTAG	2 cut(s)	258, 452
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	2 cut(s)	222, 624
GsuI	CTGGAG	1 cut(s)	259
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	3 cut(s)	132, 231, 407
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	395
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	2 cut(s)	151, 704
HpaII	CCGG	3 cut(s)	132, 231, 407
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	4 cut(s)	29, 115, 195, 316
Hpy188III	TCNNGA	5 cut(s)	16, 132, 284, 376, 557
Hpy8I	GTNNAC	1 cut(s)	42
Hpy99I	CGWCG	2 cut(s)	151, 190
HpyAV	CCTTC	2 cut(s)	263, 398
HpyCH4III	ACNGT	4 cut(s)	39, 553, 571, 590
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	3 cut(s)	435, 531, 614
HpyF10VI	GCNNNNNNNGC	8 cut(s)	19, 69, 209, 218, 227, 485, 518, 620
HpyF3I	CTNAG	6 cut(s)	213, 315, 522, 671, 689, 698
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	1 cut(s)	395
HspAI	GCGC	1 cut(s)	119
Kpn2I	TCCGGA	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	244, 403
LguI	GCTCTTC	1 cut(s)	113
LmnI	GCTCC	4 cut(s)	18, 335, 460, 563
Lsp1109I	GCAGC	1 cut(s)	610
LweI	GCATC	3 cut(s)	106, 346, 466
MaeI	CTAG	2 cut(s)	258, 452
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	2 cut(s)	343, 409
MalI	GATC	2 cut(s)	246, 405
MboI	GATC	2 cut(s)	244, 403
MboII	GAAGA	1 cut(s)	100
MfeI	CAATTG	1 cut(s)	615
MflI	RGATCY	2 cut(s)	244, 403
MhlI	GDGCHC	3 cut(s)	210, 276, 507
MluCI	AATT	3 cut(s)	306, 498, 615
MmeI	TCCRAC	1 cut(s)	52
MroI	TCCGGA	1 cut(s)	131
MroXI	GAANNNNTTC	1 cut(s)	679
MseI	TTAA	2 cut(s)	548, 585
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	3 cut(s)	132, 231, 407
MspR9I	CCNGG	2 cut(s)	200, 238
MunI	CAATTG	1 cut(s)	615
MvaI	CCWGG	2 cut(s)	200, 238
MwoI	GCNNNNNNNGC	8 cut(s)	19, 69, 209, 218, 227, 485, 518, 620
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	2 cut(s)	244, 403
NlaIII	CATG	1 cut(s)	395
NlaIV	GGNNCC	3 cut(s)	235, 246, 405
NmeAIII	GCCGAG	2 cut(s)	82, 652
NmuCI	GTSAC	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	113
PdmI	GAANNNNTTC	1 cut(s)	679
PfeI	GAWTC	2 cut(s)	151, 704
PkrI	GCNGC	2 cut(s)	223, 625
PmaCI	CACGTG	1 cut(s)	508
PmlI	CACGTG	1 cut(s)	508
Ppu21I	YACGTR	1 cut(s)	508
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	198, 236
PspCI	CACGTG	1 cut(s)	508
PspEI	GGTNACC	1 cut(s)	409
PspGI	CCWGG	2 cut(s)	198, 236
PspN4I	GGNNCC	3 cut(s)	235, 246, 405
PspPI	GGNCC	1 cut(s)	261
PsuI	RGATCY	2 cut(s)	244, 403
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	2 cut(s)	41, 687
RsaNI	GTAC	2 cut(s)	40, 686
SacI	GAGCTC	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	548, 585
SatI	GCNGC	2 cut(s)	222, 624
Sau3AI	GATC	2 cut(s)	244, 403
Sau96I	GGNCC	1 cut(s)	261
ScrFI	CCNGG	2 cut(s)	200, 238
SduI	GDGCHC	3 cut(s)	210, 276, 507
SfaNI	GCATC	3 cut(s)	106, 346, 466
SmlI	CTYRAG	2 cut(s)	275, 415
SmoI	CTYRAG	2 cut(s)	275, 415
SpeI	ACTAGT	1 cut(s)	451
Sse9I	AATT	3 cut(s)	306, 498, 615
SsiI	CCGC	7 cut(s)	32, 45, 51, 70, 143, 158, 222
SspMI	CTAG	2 cut(s)	258, 452
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	2 cut(s)	198, 236
TaaI	ACNGT	4 cut(s)	39, 553, 571, 590
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	2 cut(s)	76, 149
TasI	AATT	3 cut(s)	306, 498, 615
TatI	WGTACW	1 cut(s)	685
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	2 cut(s)	151, 704
Tru1I	TTAA	2 cut(s)	548, 585
Tru9I	TTAA	2 cut(s)	548, 585
TscAI	CASTG	1 cut(s)	670
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	623
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	380
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	1 cut(s)	670
XapI	RAATTY	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	679
XspI	CTAG	2 cut(s)	258, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.