Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003217

Physical Location & Seq

Genomic Coordinates Reverse (-)

65791000 .. 65794120

Gene Structure 3121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020509

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCATGACTTGGAAGCTCCTGAAGCAACTCCGACCACCACCGTACACCGCCACCGCCTCTACGACCCTCCACCGCCCTCGATTTCTTAACTTCCATAATGCCGCTCGGCTCTTCTCCGATGCGCCTCCGCTGCCTCCTCCCTCCGGAGAGCCTCCGTCGATTCCACCGCCTCAAAACTCTCACTCTCCCTCGCCGTCGTCTCTGAACCAGGCAGAGCTCGCTAAGTTCGCCGCCATTGCCGAAACCTGGTGGGATTCTGAAGGACCGTTCAAACCTTTGCATGCGATGAATCCTACAAGGCTCGCCTTCATTCGCTCAACGCTGTGTCGTCATTTCAGGAGGGATCCATTATCTGCTAGGCCATTTGAAGGGCTCAAGTTTATTGATGTTGGCTGTGGTGGTGGAATTCTGTCTGAGCCTTTAGCACGCATGGGAGCTTCTGTGACTGGAGTTGATGCTGTTGAGAAAAATATCAAGATAGCTCGCCTTCATGCTGACTTGGATCCTGTGACCTCAAGCATTGAATATCATTGCACAACAGCTGAAAAACTAGTCGACGAGCAGAGGATTTTTGATGCTGTGTTTGCTTTAGAGGTAATTGAGCACGTGGCAAATCCTGCTGAGTTCTGCAAATCTCTGTCTGCCTTAACTGTTCCTGATGGAGCTACCGTGATTTCAACTATTAACCGTTCTATGAGAGCATATGCTGCTGCGATTGTTGCTGCCGAGTATATCCTCCACTGGCTTCCGAAAGGTACACATCAATGGTCCAGTTTCCTTACCCCTGAAGAACTAGTCTTGATCCTGGAGCGTGCTTCTATTTCGGTCCAAGAGATGGCTGGATTTGCATACAACCCTTTGACAGGAAGATGGTCTATATCTGATGATGTTAGTGTAAACTTTATCGCCTATGGTACCAAAACAGAAACAGCCACTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

315

Amino Acids

34.44

Weight (kDa)

6.37

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	114 - 273	1.5e-20	Methyltransferase domain
Methyltransf_31	PF13847	124 - 252	3.6e-13	Methyltransferase domain
CMAS	PF02353	124 - 238	2.5e-06	Mycolic acid cyclopropane synthetase
PrmA	PF06325	126 - 229	3.2e-07	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_11	PF08241	129 - 225	1.2e-17	Methyltransferase domain
Methyltransf_25	PF13649	129 - 222	6.6e-14	Methyltransferase domain
Methyltransf_12	PF08242	129 - 222	1.1e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30920 AT2G30920
fragaria_vesca	FvH4_6g37760
malus_domestica	MD09G1156300.v1.1 MD17G1142800.v1.1
prunus_persica	Prupe.3G169300_v2.0.a1
pyrus_communis	pycom17g13580
rosa_chinensis	RchiOBHm_Chr2g0150821 RchiOBHm_Chr4g0446711 RchiOBHm_Chr7g0218911
rosa_laevigata	RLG00000002318 RLG00000002325 RLG00000002354 RLG00000005638 RLG00000020509
rosa_multiflora	Rmu_sc0001753.1_g000039 Rmu_sc0003823.1_g000004
rosa_roxburghii	Rroxscaffold_3G00240410
rosa_rugosa	Rorug02G0422600 Rorug04G0373900 Rorug07G0179700
rosa_samantha	Rh2AG482800 Rh2BG495400 Rh2CG469100 Rh2DG506200 Rh3BG339500 Rh4AG435400 Rh4BG444300 Rh4CG461600 Rh4DG443200 Rh7AG322900 Rh7BG314000 Rh7CG339700 Rh7DG320100
rosa_wichuraiana	Rw2G039570 Rw4G037220 Rw7G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	943
Acc65I	GGTACC	1 cut(s)	917
AccB1I	GGYRCC	1 cut(s)	917
AccB7I	CCANNNNNTGG	2 cut(s)	12, 838
AccBSI	CCGCTC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	558
AccIII	TCCGGA	1 cut(s)	146
AciI	CCGC	7 cut(s)	51, 57, 76, 105, 131, 170, 234
AclWI	GGATC	5 cut(s)	341, 354, 500, 513, 799
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	408
AcuI	CTGAAG	3 cut(s)	44, 282, 810
AcvI	CACGTG	1 cut(s)	610
AfaI	GTAC	3 cut(s)	47, 760, 919
AfiI	CCNNNNNNNGG	6 cut(s)	12, 146, 249, 371, 838, 866
AgsI	TTSAA	4 cut(s)	274, 371, 527, 681
AhlI	ACTAGT	2 cut(s)	553, 796
AjnI	CCWGG	3 cut(s)	210, 248, 807
AluBI	AGCT	6 cut(s)	19, 220, 440, 485, 545, 668
AluI	AGCT	6 cut(s)	19, 220, 440, 485, 545, 668
Alw21I	GWGCWC	2 cut(s)	222, 609
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	5 cut(s)	341, 354, 500, 513, 799
Aor13HI	TCCGGA	1 cut(s)	146
AoxI	GGCC	2 cut(s)	3, 362
ApeKI	GCWGC	4 cut(s)	133, 710, 713, 725
ApoI	RAATTY	1 cut(s)	408
Asp718I	GGTACC	1 cut(s)	917
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	3 cut(s)	266, 771, 829
AvaII	GGWCC	3 cut(s)	266, 771, 829
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	346, 505
BanI	GGYRCC	1 cut(s)	917
BanII	GRGCYC	2 cut(s)	222, 378
BbrPI	CACGTG	1 cut(s)	610
Bbv12I	GWGCWC	2 cut(s)	222, 609
BbvI	GCAGC	4 cut(s)	120, 697, 700, 712
BccI	CCATC	3 cut(s)	656, 832, 867
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	3 cut(s)	212, 250, 809
BcoDI	GTCTC	1 cut(s)	207
BcuI	ACTAGT	2 cut(s)	553, 796
BfaI	CTAG	3 cut(s)	360, 554, 797
BisI	GCNGC	6 cut(s)	105, 134, 234, 711, 714, 726
BlsI	GCNGC	6 cut(s)	106, 135, 235, 712, 715, 727
Bme1390I	CCNGG	3 cut(s)	212, 250, 809
Bme18I	GGWCC	3 cut(s)	266, 771, 829
BmgT120I	GGNCC	3 cut(s)	266, 771, 829
BmiI	GGNNCC	3 cut(s)	348, 507, 919
BmrFI	CCNGG	3 cut(s)	212, 250, 809
BmsI	GCATC	3 cut(s)	112, 448, 568
BpmI	CTGGAG	2 cut(s)	471, 830
BpuEI	CTTGAG	2 cut(s)	362, 502
BsaAI	YACGTR	1 cut(s)	610
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	4 cut(s)	429, 459, 657, 687
Bsc4I	CCNNNNNNNGG	6 cut(s)	12, 146, 249, 371, 838, 866
Bse1I	ACTGG	3 cut(s)	454, 749, 774
Bse3DI	GCAATG	2 cut(s)	237, 532
BseAI	TCCGGA	1 cut(s)	146
BseBI	CCWGG	3 cut(s)	212, 250, 809
BseLI	CCNNNNNNNGG	6 cut(s)	12, 146, 249, 371, 838, 866
BseMI	GCAATG	2 cut(s)	237, 532
BseMII	CTCAG	2 cut(s)	408, 615
BseNI	ACTGG	3 cut(s)	454, 749, 774
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	4 cut(s)	120, 697, 700, 712
BshFI	GGCC	2 cut(s)	5, 364
BshNI	GGYRCC	1 cut(s)	917
BsiHKAI	GWGCWC	2 cut(s)	222, 609
BsiSI	CCGG	1 cut(s)	147
BslI	CCNNNNNNNGG	6 cut(s)	12, 146, 249, 371, 838, 866
BsmAI	GTCTC	1 cut(s)	207
BsmBI	CGTCTC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	5, 364
Bsp1286I	GDGCHC	3 cut(s)	222, 378, 609
Bsp13I	TCCGGA	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	346, 505, 804
BspACI	CCGC	7 cut(s)	51, 57, 76, 105, 131, 170, 234
BspANI	GGCC	2 cut(s)	5, 364
BspCNI	CTCAG	2 cut(s)	409, 616
BspEI	TCCGGA	1 cut(s)	146
BspLI	GGNNCC	3 cut(s)	348, 507, 919
BspPI	GGATC	5 cut(s)	341, 354, 500, 513, 799
BspQI	GCTCTTC	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	917
BsrBI	CCGCTC	1 cut(s)	107
BsrDI	GCAATG	2 cut(s)	237, 532
BsrI	ACTGG	3 cut(s)	454, 749, 774
BssMI	GATC	3 cut(s)	346, 505, 804
Bst2UI	CCWGG	3 cut(s)	212, 250, 809
Bst4CI	ACNGT	5 cut(s)	45, 270, 655, 673, 692
Bst6I	CTCTTC	1 cut(s)	119
BstAPI	GCANNNNNTGC	2 cut(s)	620, 710
BstBAI	YACGTR	1 cut(s)	610
BstC8I	GCNNGC	6 cut(s)	222, 285, 306, 430, 487, 816
BstDEI	CTNAG	3 cut(s)	225, 417, 624
BstENI	CCTNNNNNAGG	1 cut(s)	864
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	3 cut(s)	349, 508, 807
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	3 cut(s)	346, 505, 804
BstNI	CCWGG	3 cut(s)	212, 250, 809
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	3 cut(s)	210, 248, 807
BstV1I	GCAGC	4 cut(s)	120, 697, 700, 712
BstX2I	RGATCY	2 cut(s)	346, 505
BstYI	RGATCY	2 cut(s)	346, 505
BsuRI	GGCC	2 cut(s)	5, 364
BtgZI	GCGATG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	742
Cac8I	GCNNGC	6 cut(s)	222, 285, 306, 430, 487, 816
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	3 cut(s)	266, 771, 829
CsiI	ACCWGGT	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	46, 759, 918
CviAII	CATG	4 cut(s)	7, 284, 433, 494
CviQI	GTAC	3 cut(s)	46, 759, 918
DdeI	CTNAG	3 cut(s)	225, 417, 624
DpnI	GATC	3 cut(s)	348, 507, 806
DpnII	GATC	3 cut(s)	346, 505, 804
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	2 cut(s)	222, 378
Eco47I	GGWCC	3 cut(s)	266, 771, 829
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	3 cut(s)	44, 282, 810
Eco72I	CACGTG	1 cut(s)	610
EcoICRI	GAGCTC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	864
EcoRI	GAATTC	1 cut(s)	408
EcoRII	CCWGG	3 cut(s)	210, 248, 807
EcoT38I	GRGCYC	2 cut(s)	222, 378
Esp3I	CGTCTC	1 cut(s)	207
FaeI	CATG	4 cut(s)	10, 287, 436, 497
FatI	CATG	4 cut(s)	6, 283, 432, 493
FauNDI	CATATG	1 cut(s)	706
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	6 cut(s)	105, 134, 234, 711, 714, 726
FriOI	GRGCYC	2 cut(s)	222, 378
Fsp4HI	GCNGC	6 cut(s)	105, 134, 234, 711, 714, 726
FspBI	CTAG	3 cut(s)	360, 554, 797
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	6 cut(s)	105, 134, 234, 711, 714, 726
GsuI	CTGGAG	2 cut(s)	471, 830
HaeIII	GGCC	2 cut(s)	5, 364
HapII	CCGG	1 cut(s)	147
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	4 cut(s)	10, 287, 436, 497
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	3 cut(s)	163, 257, 292
HpaII	CCGG	1 cut(s)	147
Hpy166II	GTNNAC	4 cut(s)	48, 559, 761, 901
Hpy188I	TCNGA	7 cut(s)	35, 121, 207, 262, 418, 753, 886
Hpy188III	TCNNGA	6 cut(s)	22, 147, 340, 478, 659, 802
Hpy8I	GTNNAC	4 cut(s)	48, 559, 761, 901
Hpy99I	CGWCG	3 cut(s)	163, 202, 563
HpyAV	CCTTC	4 cut(s)	257, 319, 365, 500
HpyCH4III	ACNGT	5 cut(s)	45, 270, 655, 673, 692
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	4 cut(s)	283, 537, 633, 851
HpyF3I	CTNAG	3 cut(s)	225, 417, 624
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	4 cut(s)	10, 287, 436, 497
HspAI	GCGC	1 cut(s)	125
Kpn2I	TCCGGA	1 cut(s)	146
KpnI	GGTACC	1 cut(s)	921
Kzo9I	GATC	3 cut(s)	346, 505, 804
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	4 cut(s)	24, 437, 665, 811
Lsp1109I	GCAGC	4 cut(s)	120, 697, 700, 712
LweI	GCATC	3 cut(s)	112, 448, 568
MabI	ACCWGGT	1 cut(s)	248
MaeI	CTAG	3 cut(s)	360, 554, 797
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	2 cut(s)	445, 511
MalI	GATC	3 cut(s)	348, 507, 806
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	3 cut(s)	346, 505, 804
MboII	GAAGA	3 cut(s)	106, 803, 882
MflI	RGATCY	2 cut(s)	346, 505
MhlI	GDGCHC	3 cut(s)	222, 378, 609
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	408, 600
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	58
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	90, 650, 687
MslI	CAYNNNNRTG	1 cut(s)	766
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	133, 545
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	3 cut(s)	212, 250, 809
MvaI	CCWGG	3 cut(s)	212, 250, 809
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	3 cut(s)	346, 505, 804
NlaIII	CATG	4 cut(s)	10, 287, 436, 497
NlaIV	GGNNCC	3 cut(s)	348, 507, 919
NmeAIII	GCCGAG	2 cut(s)	88, 754
NmuCI	GTSAC	2 cut(s)	445, 511
NspI	RCATGY	1 cut(s)	287
PaeI	GCATGC	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	119
PfeI	GAWTC	3 cut(s)	163, 257, 292
PflMI	CCANNNNNTGG	2 cut(s)	12, 838
PfoI	TCCNGGA	1 cut(s)	807
PkrI	GCNGC	6 cut(s)	106, 135, 235, 712, 715, 727
PmaCI	CACGTG	1 cut(s)	610
PmlI	CACGTG	1 cut(s)	610
Ppu21I	YACGTR	1 cut(s)	610
PsiI	TTATAA	1 cut(s)	943
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	3 cut(s)	210, 248, 807
PspCI	CACGTG	1 cut(s)	610
PspGI	CCWGG	3 cut(s)	210, 248, 807
PspN4I	GGNNCC	3 cut(s)	348, 507, 919
PspPI	GGNCC	3 cut(s)	266, 771, 829
PsuI	RGATCY	2 cut(s)	346, 505
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	3 cut(s)	47, 760, 919
RsaNI	GTAC	3 cut(s)	46, 759, 918
RseI	CAYNNNNRTG	1 cut(s)	766
SacI	GAGCTC	1 cut(s)	222
SalI	GTCGAC	1 cut(s)	557
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	3 cut(s)	90, 650, 687
SatI	GCNGC	6 cut(s)	105, 134, 234, 711, 714, 726
Sau3AI	GATC	3 cut(s)	346, 505, 804
Sau96I	GGNCC	3 cut(s)	266, 771, 829
ScrFI	CCNGG	3 cut(s)	212, 250, 809
SduI	GDGCHC	3 cut(s)	222, 378, 609
SexAI	ACCWGGT	1 cut(s)	248
SfaNI	GCATC	3 cut(s)	112, 448, 568
SinI	GGWCC	3 cut(s)	266, 771, 829
SmiMI	CAYNNNNRTG	1 cut(s)	766
SmlI	CTYRAG	2 cut(s)	377, 517
SmoI	CTYRAG	2 cut(s)	377, 517
SpeI	ACTAGT	2 cut(s)	553, 796
SphI	GCATGC	1 cut(s)	287
Sse9I	AATT	2 cut(s)	408, 600
SsiI	CCGC	7 cut(s)	51, 57, 76, 105, 131, 170, 234
SspMI	CTAG	3 cut(s)	360, 554, 797
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	210, 248, 807
TaaI	ACNGT	5 cut(s)	45, 270, 655, 673, 692
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	3 cut(s)	82, 161, 558
TaqII	GACCGA	1 cut(s)	817
TasI	AATT	2 cut(s)	408, 600
TauI	GCSGC	2 cut(s)	107, 236
TfiI	GAWTC	3 cut(s)	163, 257, 292
Tru1I	TTAA	3 cut(s)	90, 650, 687
Tru9I	TTAA	3 cut(s)	90, 650, 687
TscAI	CASTG	1 cut(s)	749
TseFI	GTSAC	2 cut(s)	445, 511
TseI	GCWGC	4 cut(s)	133, 710, 713, 725
Tsp45I	GTSAC	2 cut(s)	445, 511
TspDTI	ATGAA	3 cut(s)	301, 305, 482
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	749
Van91I	CCANNNNNTGG	2 cut(s)	12, 838
VpaK11BI	GGWCC	3 cut(s)	266, 771, 829
XagI	CCTNNNNNAGG	1 cut(s)	864
XapI	RAATTY	1 cut(s)	408
XceI	RCATGY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	839
XmiI	GTMKAC	1 cut(s)	558
XspI	CTAG	3 cut(s)	360, 554, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.