Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003217

Physical Location & Seq

Genomic Coordinates Forward (+)

30342350 .. 30345646

Gene Structure 3297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG314000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCCATGACTTGGAAGCTCCTGAAGCAACTCCGAGCTCCGTACACCGTCACTGCCTCTACGAGCCTCCACCGAATTCTACCCCCTCGATTGCTGAACTTGCATAATGCCACTAGGCTTTTCTCAAATGGGCCTCCGCTGCCTCCTCCTTCTGGAGAGCCTCCTCTGATTCAACTGCCGCAAAACCCTCCCTCTCCGTCTCCGTCGTCGCTGAACCAGGCAGAGCTCGCTAAGTTTGCCACCATTTCTGGAACCTGGTGGGATTTGGAAGGACCATTCAAACCGTTGCATGCAATGAATCCTACAAGGCTTGCCTTCATTCGCTCAACGCTGTGCTGTCATTTCAGGAGGGACCCGTTATCTGCTAGGCCCTTTGAAGGGCTCAGATTTATTGATGTTGGCTGTGGAGGTGGGATTCTTTCTGAGCCTTTAGCTCGGATGGGAGCTATTGTAACAGGAGTTGATGCTGTTGAGAAAAACATCAAGATAGCTCGCCTTCACGCAGACTTGGATCCAGTGACCTCAAAAATTGAATATCAATGCACTACAGCTGAAAAGCTAGTCGAGGAGCAAAAGAGTTTTGATGCTGTGTTTGCTTTAGAGGTGATTGAGCACGTGGAAAATCCTGCTGATTTCTGTAAATCTCTGTCAGCCTTAACTGTTCCCAGTGGAGCTACCGTGATTTCAACGATTAACCGTTCTATGAGAGCATATGCCACTGCCATAATTGCAGCCGAGTATCTGCTCCACTGGCTTCCTAAAGGTACACATCAATGGTCAAATTTTCTTACTCCTGAAGAACTAGTCCTGATCCTGGAGCGTGCTTCTATTTCAGTCCAAGAGATGGCTGGGTTTGCATACAACCCTGTGACAGGAAGATGGTCAATATCTGATGATGTTAGTGTAAATTTCATCGCTTATGGTACTAAAACCAAAACAGGCAATTTAGAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

318

Amino Acids

34.95

Weight (kDa)

7.09

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	111 - 275	1e-19	Methyltransferase domain
Methyltransf_31	PF13847	126 - 259	4.6e-13	Methyltransferase domain
CMAS	PF02353	126 - 238	4.4e-06	Mycolic acid cyclopropane synthetase
PrmA	PF06325	129 - 231	2.3e-06	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_11	PF08241	131 - 227	4.7e-19	Methyltransferase domain
Methyltransf_25	PF13649	131 - 224	1.6e-14	Methyltransferase domain
Methyltransf_12	PF08242	131 - 224	6.1e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30920 AT2G30920
fragaria_vesca	FvH4_6g37760
malus_domestica	MD09G1156300.v1.1 MD17G1142800.v1.1
prunus_persica	Prupe.3G169300_v2.0.a1
pyrus_communis	pycom17g13580
rosa_chinensis	RchiOBHm_Chr2g0150821 RchiOBHm_Chr4g0446711 RchiOBHm_Chr7g0218911
rosa_laevigata	RLG00000002318 RLG00000002325 RLG00000002354 RLG00000005638 RLG00000020509
rosa_multiflora	Rmu_sc0001753.1_g000039 Rmu_sc0003823.1_g000004
rosa_roxburghii	Rroxscaffold_3G00240410
rosa_rugosa	Rorug02G0422600 Rorug04G0373900 Rorug07G0179700
rosa_samantha	Rh2AG482800 Rh2BG495400 Rh2CG469100 Rh2DG506200 Rh3BG339500 Rh4AG435400 Rh4BG444300 Rh4CG461600 Rh4DG443200 Rh7AG322900 Rh7BG314000 Rh7CG339700 Rh7DG320100
rosa_wichuraiana	Rw2G039570 Rw4G037220 Rw7G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	12, 844
AciI	CCGC	2 cut(s)	137, 179
AclWI	GGATC	3 cut(s)	506, 519, 805
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	75, 781, 907
AcuI	CTGAAG	2 cut(s)	44, 816
AcvI	CACGTG	1 cut(s)	616
AfaI	GTAC	3 cut(s)	44, 766, 925
AfiI	CCNNNNNNNGG	7 cut(s)	12, 152, 377, 378, 814, 844, 872
AgsI	TTSAA	5 cut(s)	173, 280, 377, 533, 687
AhlI	ACTAGT	1 cut(s)	802
AjnI	CCWGG	3 cut(s)	216, 254, 813
AluBI	AGCT	9 cut(s)	19, 38, 226, 434, 446, 491, 551, 559, 674
AluI	AGCT	9 cut(s)	19, 38, 226, 434, 446, 491, 551, 559, 674
Alw21I	GWGCWC	3 cut(s)	40, 228, 615
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	3 cut(s)	506, 519, 805
AoxI	GGCC	3 cut(s)	3, 131, 368
ApeKI	GCWGC	2 cut(s)	139, 731
ApoI	RAATTY	3 cut(s)	75, 781, 907
AspS9I	GGNCC	4 cut(s)	131, 272, 352, 369
AsuHPI	GGTGA	1 cut(s)	616
AvaII	GGWCC	2 cut(s)	272, 352
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	511
BanII	GRGCYC	3 cut(s)	40, 228, 384
BbrPI	CACGTG	1 cut(s)	616
Bbv12I	GWGCWC	3 cut(s)	40, 228, 615
BbvI	GCAGC	2 cut(s)	126, 743
BccI	CCATC	3 cut(s)	433, 838, 873
BciT130I	CCWGG	3 cut(s)	218, 256, 815
BcoDI	GTCTC	1 cut(s)	204
BcuI	ACTAGT	1 cut(s)	802
BfaI	CTAG	4 cut(s)	114, 366, 560, 803
BfmI	CTRYAG	1 cut(s)	546
BisI	GCNGC	3 cut(s)	140, 179, 732
BlsI	GCNGC	3 cut(s)	141, 180, 733
Bme1390I	CCNGG	3 cut(s)	218, 256, 815
Bme18I	GGWCC	2 cut(s)	272, 352
BmgT120I	GGNCC	4 cut(s)	131, 272, 352, 369
BmiI	GGNNCC	4 cut(s)	253, 353, 354, 513
BmrFI	CCNGG	3 cut(s)	218, 256, 815
BmrI	ACTGGG	1 cut(s)	660
BmsI	GCATC	2 cut(s)	454, 574
BmuI	ACTGGG	1 cut(s)	660
BpmI	CTGGAG	2 cut(s)	174, 836
BsaAI	YACGTR	1 cut(s)	616
BsaXI	ACNNNNNCTCC	4 cut(s)	435, 465, 663, 693
Bsc4I	CCNNNNNNNGG	7 cut(s)	12, 152, 377, 378, 814, 844, 872
Bse1I	ACTGG	3 cut(s)	515, 666, 755
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	3 cut(s)	218, 256, 815
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	7 cut(s)	12, 152, 377, 378, 814, 844, 872
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	2 cut(s)	397, 414
BseNI	ACTGG	3 cut(s)	515, 666, 755
BseRI	GAGGAG	3 cut(s)	135, 153, 581
BseXI	GCAGC	2 cut(s)	126, 743
BseYI	CCCAGC	1 cut(s)	848
BshFI	GGCC	3 cut(s)	5, 133, 370
BsiHKAI	GWGCWC	3 cut(s)	40, 228, 615
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	7 cut(s)	12, 152, 377, 378, 814, 844, 872
BsmAI	GTCTC	1 cut(s)	204
BsmBI	CGTCTC	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	3 cut(s)	5, 133, 370
Bsp1286I	GDGCHC	4 cut(s)	40, 228, 384, 615
Bsp143I	GATC	2 cut(s)	511, 810
BspACI	CCGC	2 cut(s)	137, 179
BspANI	GGCC	3 cut(s)	5, 133, 370
BspCNI	CTCAG	2 cut(s)	396, 415
BspLI	GGNNCC	4 cut(s)	253, 353, 354, 513
BspPI	GGATC	3 cut(s)	506, 519, 805
BsrDI	GCAATG	1 cut(s)	300
BsrI	ACTGG	3 cut(s)	515, 666, 755
BssMI	GATC	2 cut(s)	511, 810
Bst2UI	CCWGG	3 cut(s)	218, 256, 815
Bst4CI	ACNGT	5 cut(s)	49, 285, 661, 679, 698
BstBAI	YACGTR	1 cut(s)	616
BstC8I	GCNNGC	5 cut(s)	228, 291, 312, 493, 822
BstDEI	CTNAG	3 cut(s)	231, 383, 423
BstENI	CCTNNNNNAGG	1 cut(s)	870
BstF5I	GGATG	1 cut(s)	444
BstKTI	GATC	2 cut(s)	514, 813
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	2 cut(s)	511, 810
BstMWI	GCNNNNNNNGC	9 cut(s)	25, 100, 139, 227, 236, 593, 728, 751, 854
BstNI	CCWGG	3 cut(s)	218, 256, 815
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	3 cut(s)	216, 254, 813
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	2 cut(s)	126, 743
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	3 cut(s)	5, 133, 370
BtgZI	GCGATG	1 cut(s)	898
BtsCI	GGATG	1 cut(s)	444
BtsI	GCAGTG	2 cut(s)	51, 717
BtsIMutI	CAGTG	5 cut(s)	51, 522, 673, 717, 748
Cac8I	GCNNGC	5 cut(s)	228, 291, 312, 493, 822
Cfr13I	GGNCC	4 cut(s)	131, 272, 352, 369
CsiI	ACCWGGT	1 cut(s)	254
Csp6I	GTAC	3 cut(s)	43, 765, 924
CviAII	CATG	2 cut(s)	7, 290
CviQI	GTAC	3 cut(s)	43, 765, 924
DdeI	CTNAG	3 cut(s)	231, 383, 423
DpnI	GATC	2 cut(s)	513, 812
DpnII	GATC	2 cut(s)	511, 810
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	2 cut(s)	38, 226
Eco24I	GRGCYC	3 cut(s)	40, 228, 384
Eco47I	GGWCC	2 cut(s)	272, 352
Eco53kI	GAGCTC	2 cut(s)	38, 226
Eco57I	CTGAAG	2 cut(s)	44, 816
Eco72I	CACGTG	1 cut(s)	616
EcoICRI	GAGCTC	2 cut(s)	38, 226
EcoNI	CCTNNNNNAGG	1 cut(s)	870
EcoO109I	RGGNCCY	2 cut(s)	352, 369
EcoRI	GAATTC	1 cut(s)	75
EcoRII	CCWGG	3 cut(s)	216, 254, 813
EcoT38I	GRGCYC	3 cut(s)	40, 228, 384
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	2 cut(s)	10, 293
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	2 cut(s)	6, 289
FauNDI	CATATG	1 cut(s)	712
Fnu4HI	GCNGC	3 cut(s)	140, 179, 732
FokI	GGATG	1 cut(s)	451
FriOI	GRGCYC	3 cut(s)	40, 228, 384
Fsp4HI	GCNGC	3 cut(s)	140, 179, 732
FspBI	CTAG	4 cut(s)	114, 366, 560, 803
GluI	GCNGC	3 cut(s)	140, 179, 732
GsaI	CCCAGC	1 cut(s)	852
GsuI	CTGGAG	2 cut(s)	174, 836
HaeIII	GGCC	3 cut(s)	5, 133, 370
Hin1II	CATG	2 cut(s)	10, 293
HinfI	GANTC	3 cut(s)	169, 298, 415
HphI	GGTGA	1 cut(s)	616
Hpy166II	GTNNAC	2 cut(s)	45, 767
Hpy188I	TCNGA	6 cut(s)	35, 168, 386, 424, 438, 892
Hpy188III	TCNNGA	7 cut(s)	22, 153, 249, 346, 484, 794, 808
Hpy8I	GTNNAC	2 cut(s)	45, 767
Hpy99I	CGWCG	2 cut(s)	208, 211
HpyAV	CCTTC	5 cut(s)	159, 263, 325, 371, 506
HpyCH4III	ACNGT	5 cut(s)	49, 285, 661, 679, 698
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	6 cut(s)	103, 289, 293, 543, 731, 857
HpyF10VI	GCNNNNNNNGC	9 cut(s)	25, 100, 139, 227, 236, 593, 728, 751, 854
HpyF3I	CTNAG	3 cut(s)	231, 383, 423
HpySE526I	ACGT	1 cut(s)	615
Hsp92II	CATG	2 cut(s)	10, 293
KflI	GGGWCCC	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	511, 810
LmnI	GCTCC	7 cut(s)	24, 43, 443, 568, 671, 750, 817
Lsp1109I	GCAGC	2 cut(s)	126, 743
LweI	GCATC	2 cut(s)	454, 574
MabI	ACCWGGT	1 cut(s)	254
MaeI	CTAG	4 cut(s)	114, 366, 560, 803
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	4 cut(s)	49, 451, 517, 868
MalI	GATC	2 cut(s)	513, 812
MboI	GATC	2 cut(s)	511, 810
MboII	GAAGA	2 cut(s)	809, 888
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	4 cut(s)	40, 228, 384, 615
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	75, 528, 726, 781, 907, 943
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	656, 693
MslI	CAYNNNNRTG	1 cut(s)	772
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	139, 551
MspR9I	CCNGG	3 cut(s)	218, 256, 815
MvaI	CCWGG	3 cut(s)	218, 256, 815
MwoI	GCNNNNNNNGC	9 cut(s)	25, 100, 139, 227, 236, 593, 728, 751, 854
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	2 cut(s)	511, 810
NlaIII	CATG	2 cut(s)	10, 293
NlaIV	GGNNCC	4 cut(s)	253, 353, 354, 513
NmeAIII	GCCGAG	1 cut(s)	760
NmuCI	GTSAC	3 cut(s)	49, 517, 868
NspI	RCATGY	1 cut(s)	293
PaeI	GCATGC	1 cut(s)	293
PfeI	GAWTC	3 cut(s)	169, 298, 415
PflMI	CCANNNNNTGG	2 cut(s)	12, 844
PfoI	TCCNGGA	1 cut(s)	813
PkrI	GCNGC	3 cut(s)	141, 180, 733
PmaCI	CACGTG	1 cut(s)	616
PmlI	CACGTG	1 cut(s)	616
Ppu21I	YACGTR	1 cut(s)	616
PpuMI	RGGWCCY	1 cut(s)	352
Psp124BI	GAGCTC	2 cut(s)	40, 228
Psp5II	RGGWCCY	1 cut(s)	352
Psp6I	CCWGG	3 cut(s)	216, 254, 813
PspCI	CACGTG	1 cut(s)	616
PspFI	CCCAGC	1 cut(s)	848
PspGI	CCWGG	3 cut(s)	216, 254, 813
PspN4I	GGNNCC	4 cut(s)	253, 353, 354, 513
PspPI	GGNCC	4 cut(s)	131, 272, 352, 369
PspPPI	RGGWCCY	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	511
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	3 cut(s)	44, 766, 925
RsaNI	GTAC	3 cut(s)	43, 765, 924
RseI	CAYNNNNRTG	1 cut(s)	772
SacI	GAGCTC	2 cut(s)	40, 228
SaqAI	TTAA	2 cut(s)	656, 693
SatI	GCNGC	3 cut(s)	140, 179, 732
Sau3AI	GATC	2 cut(s)	511, 810
Sau96I	GGNCC	4 cut(s)	131, 272, 352, 369
ScrFI	CCNGG	3 cut(s)	218, 256, 815
SduI	GDGCHC	4 cut(s)	40, 228, 384, 615
SexAI	ACCWGGT	1 cut(s)	254
SfaNI	GCATC	2 cut(s)	454, 574
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	2 cut(s)	272, 352
SmiMI	CAYNNNNRTG	1 cut(s)	772
SpeI	ACTAGT	1 cut(s)	802
SphI	GCATGC	1 cut(s)	293
Sse9I	AATT	6 cut(s)	75, 528, 726, 781, 907, 943
SsiI	CCGC	2 cut(s)	137, 179
SspMI	CTAG	4 cut(s)	114, 366, 560, 803
SstI	GAGCTC	2 cut(s)	40, 228
StyD4I	CCNGG	3 cut(s)	216, 254, 813
TaaI	ACNGT	5 cut(s)	49, 285, 661, 679, 698
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	2 cut(s)	88, 564
TasI	AATT	6 cut(s)	75, 528, 726, 781, 907, 943
TauI	GCSGC	1 cut(s)	181
TfiI	GAWTC	3 cut(s)	169, 298, 415
Tru1I	TTAA	2 cut(s)	656, 693
Tru9I	TTAA	2 cut(s)	656, 693
TscAI	CASTG	5 cut(s)	58, 522, 673, 724, 755
TseFI	GTSAC	3 cut(s)	49, 517, 868
TseI	GCWGC	2 cut(s)	139, 731
Tsp45I	GTSAC	3 cut(s)	49, 517, 868
TspDTI	ATGAA	3 cut(s)	307, 311, 901
TspGWI	ACGGA	3 cut(s)	30, 186, 192
TspRI	CASTG	5 cut(s)	58, 522, 673, 724, 755
Van91I	CCANNNNNTGG	2 cut(s)	12, 844
VpaK11BI	GGWCC	2 cut(s)	272, 352
XagI	CCTNNNNNAGG	1 cut(s)	870
XapI	RAATTY	3 cut(s)	75, 781, 907
XceI	RCATGY	1 cut(s)	293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	845
XspI	CTAG	4 cut(s)	114, 366, 560, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.