Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003217

Physical Location & Seq

Genomic Coordinates Forward (+)

35357764 .. 35361050

Gene Structure 3287 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G027360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCCATGACTTGGAAGCTCTTGAAGCAAGTCCGAGCACCGTACACCGCTTTTCTCAAATGGGCCTCCTCTGCCTCTCCTTCTGGAGAGCCTCCTCTGATTCAACTGCTGCAAAACCCTCCCTCTCTGTCTCCGTCGTCGCTGAACCAGGCAGAGCTTGCTAAGTTTGCCACCATTTCCGGAACCTGGTGGGATTTGGAAGGACCATTCAAACCGTTGCATGCAATGAATCCTACAAGGCTTGCCTTCATTCGCTCAACGCTGTGCCGTCATTTCAGGAGGGACCCGTTATCTGCTAGGCCCTTTGAAGGGCTCAGATTTATTGATGTTGGCTGTGGAGGTGGGATTCTTTCCGAGCCTTTAGCTCGGATGGGAGCTATTGTAACAGGAGTTGATGCTGTTGAGAAAAACATCAAGATAGCTCGCCTTCACGCAGACTTGGATCCAATGACCTCAAAAATTGAATATCAATGCACTACAGCTGAAAAGCTAGTCGAGGAGCAAAAGAGTTTTGATGCTGTGTTTGCTTTAGAGGTGATTGAGCACGTGGAAAATCCTGCTGATTTCTGTAAATCTCTGTCAGCCTTAACTGTTCCCAGTGGAGCTACCGTGATTTCAACAATTAACCGTTCTATGAGAGCATATGCCACTGCCATAATTGCAGCCGAGTATCTGCTCCACTGGCTTCCTAAAGGTACACATCAATGGTCAAATTTTCTTACTCCTGAAGAACTAGTCCTGATCCTGGAGCGTGCTTCTATTTCAGTCCAAGAGATGGCTGGGTTTGCATACAACCCTTTGACAGGAAGATGGTCAATATCTGATGATGTTAGTGTAAATCTCATCGCTTATGGTACTAAAACCAAAACAGGCAATTTAGAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

295

Amino Acids

32.5

Weight (kDa)

6.6

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	93 - 252	1.2e-19	Methyltransferase domain
Methyltransf_31	PF13847	103 - 237	4.9e-13	Methyltransferase domain
CMAS	PF02353	103 - 215	3.1e-06	Mycolic acid cyclopropane synthetase
PrmA	PF06325	106 - 208	3.2e-06	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_11	PF08241	108 - 204	5.8e-19	Methyltransferase domain
Methyltransf_25	PF13649	108 - 201	1.6e-14	Methyltransferase domain
Methyltransf_12	PF08242	108 - 201	1.3e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30920 AT2G30920
fragaria_vesca	FvH4_6g37760
malus_domestica	MD09G1156300.v1.1 MD17G1142800.v1.1
prunus_persica	Prupe.3G169300_v2.0.a1
pyrus_communis	pycom17g13580
rosa_chinensis	RchiOBHm_Chr2g0150821 RchiOBHm_Chr4g0446711 RchiOBHm_Chr7g0218911
rosa_laevigata	RLG00000002318 RLG00000002325 RLG00000002354 RLG00000005638 RLG00000020509
rosa_multiflora	Rmu_sc0001753.1_g000039 Rmu_sc0003823.1_g000004
rosa_roxburghii	Rroxscaffold_3G00240410
rosa_rugosa	Rorug02G0422600 Rorug04G0373900 Rorug07G0179700
rosa_samantha	Rh2AG482800 Rh2BG495400 Rh2CG469100 Rh2DG506200 Rh3BG339500 Rh4AG435400 Rh4BG444300 Rh4CG461600 Rh4DG443200 Rh7AG322900 Rh7BG314000 Rh7CG339700 Rh7DG320100
rosa_wichuraiana	Rw2G039570 Rw4G037220 Rw7G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	12, 775
AccIII	TCCGGA	1 cut(s)	179
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	3 cut(s)	437, 450, 736
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	712
AcuI	CTGAAG	1 cut(s)	747
AcvI	CACGTG	1 cut(s)	547
AfaI	GTAC	3 cut(s)	44, 697, 856
AfiI	CCNNNNNNNGG	7 cut(s)	12, 186, 308, 309, 745, 775, 803
AgsI	TTSAA	6 cut(s)	25, 104, 211, 308, 464, 618
AhlI	ACTAGT	1 cut(s)	733
AjnI	CCWGG	3 cut(s)	147, 185, 744
AluBI	AGCT	8 cut(s)	19, 157, 365, 377, 422, 482, 490, 605
AluI	AGCT	8 cut(s)	19, 157, 365, 377, 422, 482, 490, 605
Alw21I	GWGCWC	2 cut(s)	40, 546
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	3 cut(s)	437, 450, 736
Aor13HI	TCCGGA	1 cut(s)	179
AoxI	GGCC	3 cut(s)	3, 63, 299
ApeKI	GCWGC	2 cut(s)	109, 662
ApoI	RAATTY	1 cut(s)	712
AspS9I	GGNCC	4 cut(s)	63, 203, 283, 300
AsuHPI	GGTGA	1 cut(s)	547
AvaII	GGWCC	2 cut(s)	203, 283
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	315
BbrPI	CACGTG	1 cut(s)	547
Bbv12I	GWGCWC	2 cut(s)	40, 546
BbvI	GCAGC	2 cut(s)	96, 674
BccI	CCATC	3 cut(s)	364, 769, 804
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	3 cut(s)	149, 187, 746
BcoDI	GTCTC	1 cut(s)	135
BcuI	ACTAGT	1 cut(s)	733
BfaI	CTAG	3 cut(s)	297, 491, 734
BfmI	CTRYAG	1 cut(s)	477
BisI	GCNGC	2 cut(s)	110, 663
BlsI	GCNGC	2 cut(s)	111, 664
Bme1390I	CCNGG	3 cut(s)	149, 187, 746
Bme18I	GGWCC	2 cut(s)	203, 283
BmgT120I	GGNCC	4 cut(s)	63, 203, 283, 300
BmiI	GGNNCC	4 cut(s)	184, 284, 285, 444
BmrFI	CCNGG	3 cut(s)	149, 187, 746
BmrI	ACTGGG	1 cut(s)	591
BmsI	GCATC	2 cut(s)	385, 505
BmuI	ACTGGG	1 cut(s)	591
BpmI	CTGGAG	2 cut(s)	105, 767
BsaAI	YACGTR	1 cut(s)	547
BsaWI	WCCGGW	1 cut(s)	179
BsaXI	ACNNNNNCTCC	4 cut(s)	366, 396, 594, 624
Bsc4I	CCNNNNNNNGG	7 cut(s)	12, 186, 308, 309, 745, 775, 803
Bse1I	ACTGG	2 cut(s)	597, 686
Bse3DI	GCAATG	1 cut(s)	231
BseAI	TCCGGA	1 cut(s)	179
BseBI	CCWGG	3 cut(s)	149, 187, 746
BseGI	GGATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	7 cut(s)	12, 186, 308, 309, 745, 775, 803
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	328
BseNI	ACTGG	2 cut(s)	597, 686
BseRI	GAGGAG	3 cut(s)	58, 84, 512
BseXI	GCAGC	2 cut(s)	96, 674
BseYI	CCCAGC	1 cut(s)	779
BshFI	GGCC	3 cut(s)	5, 65, 301
BsiHKAI	GWGCWC	2 cut(s)	40, 546
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	7 cut(s)	12, 186, 308, 309, 745, 775, 803
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	3 cut(s)	5, 65, 301
Bsp1286I	GDGCHC	3 cut(s)	40, 315, 546
Bsp13I	TCCGGA	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	442, 741
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	3 cut(s)	5, 65, 301
BspCNI	CTCAG	1 cut(s)	327
BspEI	TCCGGA	1 cut(s)	179
BspLI	GGNNCC	4 cut(s)	184, 284, 285, 444
BspPI	GGATC	3 cut(s)	437, 450, 736
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	2 cut(s)	597, 686
BssMI	GATC	2 cut(s)	442, 741
Bst2UI	CCWGG	3 cut(s)	149, 187, 746
Bst4CI	ACNGT	5 cut(s)	42, 216, 592, 610, 629
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstBAI	YACGTR	1 cut(s)	547
BstC8I	GCNNGC	5 cut(s)	159, 222, 243, 424, 753
BstDEI	CTNAG	2 cut(s)	162, 314
BstENI	CCTNNNNNAGG	1 cut(s)	801
BstF5I	GGATG	1 cut(s)	375
BstKTI	GATC	2 cut(s)	445, 744
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	2 cut(s)	442, 741
BstMWI	GCNNNNNNNGC	8 cut(s)	25, 71, 158, 167, 524, 659, 682, 785
BstNI	CCWGG	3 cut(s)	149, 187, 746
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	3 cut(s)	147, 185, 744
BstSFI	CTRYAG	1 cut(s)	477
BstV1I	GCAGC	2 cut(s)	96, 674
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BsuRI	GGCC	3 cut(s)	5, 65, 301
BtgZI	GCGATG	1 cut(s)	829
BtsCI	GGATG	1 cut(s)	375
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	3 cut(s)	604, 648, 679
Cac8I	GCNNGC	5 cut(s)	159, 222, 243, 424, 753
Cfr13I	GGNCC	4 cut(s)	63, 203, 283, 300
CsiI	ACCWGGT	1 cut(s)	185
Csp6I	GTAC	3 cut(s)	43, 696, 855
CviAII	CATG	2 cut(s)	7, 221
CviQI	GTAC	3 cut(s)	43, 696, 855
DdeI	CTNAG	2 cut(s)	162, 314
DpnI	GATC	2 cut(s)	444, 743
DpnII	GATC	2 cut(s)	442, 741
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	315
Eco47I	GGWCC	2 cut(s)	203, 283
Eco57I	CTGAAG	1 cut(s)	747
Eco72I	CACGTG	1 cut(s)	547
EcoNI	CCTNNNNNAGG	1 cut(s)	801
EcoO109I	RGGNCCY	2 cut(s)	283, 300
EcoRII	CCWGG	3 cut(s)	147, 185, 744
EcoT38I	GRGCYC	1 cut(s)	315
FaeI	CATG	2 cut(s)	10, 224
FaiI	YATR	9 cut(s)	8, 222, 635, 643, 645, 656, 790, 852, 886
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	2 cut(s)	6, 220
FauNDI	CATATG	1 cut(s)	643
Fnu4HI	GCNGC	2 cut(s)	110, 663
FokI	GGATG	1 cut(s)	382
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	110, 663
FspBI	CTAG	3 cut(s)	297, 491, 734
GluI	GCNGC	2 cut(s)	110, 663
GsaI	CCCAGC	1 cut(s)	783
GsuI	CTGGAG	2 cut(s)	105, 767
HaeIII	GGCC	3 cut(s)	5, 65, 301
HapII	CCGG	1 cut(s)	180
Hin1II	CATG	2 cut(s)	10, 224
HinfI	GANTC	3 cut(s)	100, 229, 346
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	547
Hpy166II	GTNNAC	2 cut(s)	45, 698
Hpy188I	TCNGA	6 cut(s)	35, 99, 317, 355, 369, 823
Hpy188III	TCNNGA	7 cut(s)	22, 84, 180, 277, 415, 725, 739
Hpy8I	GTNNAC	2 cut(s)	45, 698
Hpy99I	CGWCG	2 cut(s)	139, 142
HpyAV	CCTTC	5 cut(s)	90, 194, 256, 302, 437
HpyCH4III	ACNGT	5 cut(s)	42, 216, 592, 610, 629
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	6 cut(s)	112, 220, 224, 474, 662, 788
HpyF10VI	GCNNNNNNNGC	8 cut(s)	25, 71, 158, 167, 524, 659, 682, 785
HpyF3I	CTNAG	2 cut(s)	162, 314
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	2 cut(s)	10, 224
KflI	GGGWCCC	1 cut(s)	283
Kpn2I	TCCGGA	1 cut(s)	179
Kzo9I	GATC	2 cut(s)	442, 741
LmnI	GCTCC	5 cut(s)	374, 499, 602, 681, 748
Lsp1109I	GCAGC	2 cut(s)	96, 674
LweI	GCATC	2 cut(s)	385, 505
MabI	ACCWGGT	1 cut(s)	185
MaeI	CTAG	3 cut(s)	297, 491, 734
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	2 cut(s)	444, 743
MboI	GATC	2 cut(s)	442, 741
MboII	GAAGA	2 cut(s)	740, 819
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	3 cut(s)	40, 315, 546
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	459, 621, 657, 712, 874
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	587, 624
MslI	CAYNNNNRTG	1 cut(s)	703
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	3 cut(s)	149, 187, 746
MvaI	CCWGG	3 cut(s)	149, 187, 746
MwoI	GCNNNNNNNGC	8 cut(s)	25, 71, 158, 167, 524, 659, 682, 785
NdeI	CATATG	1 cut(s)	643
NdeII	GATC	2 cut(s)	442, 741
NlaIII	CATG	2 cut(s)	10, 224
NlaIV	GGNNCC	4 cut(s)	184, 284, 285, 444
NmeAIII	GCCGAG	1 cut(s)	691
NspI	RCATGY	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	224
PfeI	GAWTC	3 cut(s)	100, 229, 346
PflMI	CCANNNNNTGG	2 cut(s)	12, 775
PfoI	TCCNGGA	1 cut(s)	744
PkrI	GCNGC	2 cut(s)	111, 664
PmaCI	CACGTG	1 cut(s)	547
PmlI	CACGTG	1 cut(s)	547
Ppu21I	YACGTR	1 cut(s)	547
PpuMI	RGGWCCY	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	283
Psp6I	CCWGG	3 cut(s)	147, 185, 744
PspCI	CACGTG	1 cut(s)	547
PspFI	CCCAGC	1 cut(s)	779
PspGI	CCWGG	3 cut(s)	147, 185, 744
PspN4I	GGNNCC	4 cut(s)	184, 284, 285, 444
PspPI	GGNCC	4 cut(s)	63, 203, 283, 300
PspPPI	RGGWCCY	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	3 cut(s)	44, 697, 856
RsaNI	GTAC	3 cut(s)	43, 696, 855
RseI	CAYNNNNRTG	1 cut(s)	703
SaqAI	TTAA	2 cut(s)	587, 624
SatI	GCNGC	2 cut(s)	110, 663
Sau3AI	GATC	2 cut(s)	442, 741
Sau96I	GGNCC	4 cut(s)	63, 203, 283, 300
ScrFI	CCNGG	3 cut(s)	149, 187, 746
SduI	GDGCHC	3 cut(s)	40, 315, 546
SexAI	ACCWGGT	1 cut(s)	185
SfaNI	GCATC	2 cut(s)	385, 505
SfcI	CTRYAG	1 cut(s)	477
SinI	GGWCC	2 cut(s)	203, 283
SmiMI	CAYNNNNRTG	1 cut(s)	703
SpeI	ACTAGT	1 cut(s)	733
SphI	GCATGC	1 cut(s)	224
Sse9I	AATT	5 cut(s)	459, 621, 657, 712, 874
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	3 cut(s)	297, 491, 734
StyD4I	CCNGG	3 cut(s)	147, 185, 744
TaaI	ACNGT	5 cut(s)	42, 216, 592, 610, 629
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	1 cut(s)	495
TasI	AATT	5 cut(s)	459, 621, 657, 712, 874
TfiI	GAWTC	3 cut(s)	100, 229, 346
Tru1I	TTAA	2 cut(s)	587, 624
Tru9I	TTAA	2 cut(s)	587, 624
TscAI	CASTG	3 cut(s)	604, 655, 686
TseI	GCWGC	2 cut(s)	109, 662
TspDTI	ATGAA	2 cut(s)	238, 242
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	3 cut(s)	604, 655, 686
Van91I	CCANNNNNTGG	2 cut(s)	12, 775
VpaK11BI	GGWCC	2 cut(s)	203, 283
XagI	CCTNNNNNAGG	1 cut(s)	801
XapI	RAATTY	1 cut(s)	712
XceI	RCATGY	1 cut(s)	224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	776
XspI	CTAG	3 cut(s)	297, 491, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.