Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003217

Physical Location & Seq

Genomic Coordinates Forward (+)

36616549 .. 36623020

Gene Structure 6472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG322900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCCATGACTTGGAAGCTCCTGAAGCAACTCCGAGCACCGTACACCGTCACTGCCTCTATGAGCCTCCACCGAATTCTACCCCCTCAATTGCTGAACTTGCATAATGCCACTAGGCTTTTCTCAAATGGGCCTCCGCTGCCTCCTCCTTCTGGAGAGCCTCCTCTGATTCAACTGCTGCAAAACCCTCCCTCTCCGCCTCCGTCGTCGCTGAACCAGGCAGAGCTTGCTAAGTTTGCCACCATTTCCGGAACCTGGTGGGATTTGGAAGGACCATTCAAACCGTTGCATGCAATGAATCCTACAAGGCTTGCCTTCATTCGCTCAACGCTGTGCCGTCATTTCAGGAGGGACCCGTTATCTGCTAGGCCCTTTGAAGGGCTCAGATTTATTGATGTTGGCTGTGGAGGTGGGATTCTTTCTGAGCCTTTAGCTCGGATGGGAGCTATTGTAACAGGAGTTGATGCTGTTGAGAAAAACATCAAGATAGCTCGCCTTCACGCAGACTTGGATCCAGTGACCTCAAAAATTGAATATCAATGCACTACAGCTGAAAAGCTAGTCGTGGAGCAAAAGAGTTTTGATGCTGTGTTTGCTTTAGAGGTGATTGAGCACGTGGAAAATCCTGCTGATTTCTGTAAATCTCTGTCAGCCTTAACTGTTCCCAGTGGAGCTACTGTGATTTCAACCATTAACCGTTCTATGAGAGCATATGCCACTGCCATAATTGCAGCCGAGTATCTGCTCCGCTGGCCTGTGTTTAAGGTGCCAACTGAAATCGAATCTGTTGAGAACATTCCAGAGTTCATTAAGGGTGTGAAGAGCAGGAAGCAAAAGATGGATCCACTGATTGGGGTAGCTGTTGCTTTGAAGAAAGCTCAGTATCTGACGAGTATTTTGTTAAGAGAAAGCAGTTGTACAACTGCGTCATCTCTCCTCACTCCTTTTCTCACTGAATTAATTTCAGATTGGCTGCTCAGCAAGAGGAACGAAGTCTGGAGTTTGTCATCTTTCAGTTCCCCCTTTCTTTTGCATAAGTTGAGAACTTCGATAAGACCATCTCTGAGCAGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

358

Amino Acids

39.59

Weight (kDa)

9.45

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	116 - 257	4.4e-17	Methyltransferase domain
Methyltransf_31	PF13847	126 - 234	1.3e-12	Methyltransferase domain
PrmA	PF06325	129 - 231	3.4e-06	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_11	PF08241	131 - 227	1.1e-19	Methyltransferase domain
Methyltransf_25	PF13649	131 - 224	1.5e-14	Methyltransferase domain
Methyltransf_12	PF08242	131 - 224	3.1e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30920 AT2G30920
fragaria_vesca	FvH4_6g37760
malus_domestica	MD09G1156300.v1.1 MD17G1142800.v1.1
prunus_persica	Prupe.3G169300_v2.0.a1
pyrus_communis	pycom17g13580
rosa_chinensis	RchiOBHm_Chr2g0150821 RchiOBHm_Chr4g0446711 RchiOBHm_Chr7g0218911
rosa_laevigata	RLG00000002318 RLG00000002325 RLG00000002354 RLG00000005638 RLG00000020509
rosa_multiflora	Rmu_sc0001753.1_g000039 Rmu_sc0003823.1_g000004
rosa_roxburghii	Rroxscaffold_3G00240410
rosa_rugosa	Rorug02G0422600 Rorug04G0373900 Rorug07G0179700
rosa_samantha	Rh2AG482800 Rh2BG495400 Rh2CG469100 Rh2DG506200 Rh3BG339500 Rh4AG435400 Rh4BG444300 Rh4CG461600 Rh4DG443200 Rh7AG322900 Rh7BG314000 Rh7CG339700 Rh7DG320100
rosa_wichuraiana	Rw2G039570 Rw4G037220 Rw7G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	766
AccB7I	CCANNNNNTGG	2 cut(s)	12, 851
AccIII	TCCGGA	1 cut(s)	248
AciI	CCGC	3 cut(s)	137, 197, 748
AclWI	GGATC	4 cut(s)	506, 519, 836, 849
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	44
AcvI	CACGTG	1 cut(s)	616
AfaI	GTAC	2 cut(s)	44, 919
AfiI	CCNNNNNNNGG	6 cut(s)	12, 152, 255, 377, 378, 851
AgsI	TTSAA	6 cut(s)	173, 280, 377, 533, 687, 871
AjnI	CCWGG	2 cut(s)	216, 254
Alw21I	GWGCWC	2 cut(s)	40, 615
AlwI	GGATC	4 cut(s)	506, 519, 836, 849
AlwNI	CAGNNNCTG	1 cut(s)	886
Aor13HI	TCCGGA	1 cut(s)	248
AoxI	GGCC	4 cut(s)	3, 131, 368, 752
ApeKI	GCWGC	4 cut(s)	139, 178, 731, 973
ApoI	RAATTY	1 cut(s)	75
ArsI	GACNNNNNNTTYG	2 cut(s)	880, 912
AseI	ATTAAT	1 cut(s)	959
AspS9I	GGNCC	4 cut(s)	131, 272, 352, 369
AsuHPI	GGTGA	1 cut(s)	616
AvaII	GGWCC	2 cut(s)	272, 352
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	511, 841
BanI	GGYRCC	1 cut(s)	766
BanII	GRGCYC	1 cut(s)	384
BbrPI	CACGTG	1 cut(s)	616
Bbv12I	GWGCWC	2 cut(s)	40, 615
BbvI	GCAGC	4 cut(s)	126, 165, 743, 960
BccI	CCATC	3 cut(s)	433, 832, 1066
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	2 cut(s)	218, 256
BfaI	CTAG	3 cut(s)	114, 366, 560
BfmI	CTRYAG	1 cut(s)	546
BisI	GCNGC	4 cut(s)	140, 179, 732, 974
BlpI	GCTNAGC	1 cut(s)	977
BlsI	GCNGC	4 cut(s)	141, 180, 733, 975
Bme1390I	CCNGG	2 cut(s)	218, 256
Bme18I	GGWCC	2 cut(s)	272, 352
BmgT120I	GGNCC	4 cut(s)	131, 272, 352, 369
BmiI	GGNNCC	6 cut(s)	253, 353, 354, 513, 768, 843
BmrFI	CCNGG	2 cut(s)	218, 256
BmrI	ACTGGG	1 cut(s)	660
BmsI	GCATC	2 cut(s)	454, 574
BmuI	ACTGGG	1 cut(s)	660
BpmI	CTGGAG	2 cut(s)	174, 1018
Bpu1102I	GCTNAGC	1 cut(s)	977
BsaAI	YACGTR	1 cut(s)	616
BsaWI	WCCGGW	1 cut(s)	248
BsaXI	ACNNNNNCTCC	4 cut(s)	435, 465, 663, 693
Bsc4I	CCNNNNNNNGG	6 cut(s)	12, 152, 255, 377, 378, 851
Bse1I	ACTGG	2 cut(s)	515, 666
Bse3DI	GCAATG	1 cut(s)	300
BseAI	TCCGGA	1 cut(s)	248
BseBI	CCWGG	2 cut(s)	218, 256
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	6 cut(s)	12, 152, 255, 377, 378, 851
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	5 cut(s)	397, 414, 893, 991, 1055
BseNI	ACTGG	2 cut(s)	515, 666
BseRI	GAGGAG	3 cut(s)	135, 153, 926
BseXI	GCAGC	4 cut(s)	126, 165, 743, 960
BshFI	GGCC	4 cut(s)	5, 133, 370, 754
BshNI	GGYRCC	1 cut(s)	766
BsiHKAI	GWGCWC	2 cut(s)	40, 615
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	6 cut(s)	12, 152, 255, 377, 378, 851
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	4 cut(s)	5, 133, 370, 754
Bsp1286I	GDGCHC	3 cut(s)	40, 384, 615
Bsp13I	TCCGGA	1 cut(s)	248
Bsp1407I	TGTACA	1 cut(s)	917
Bsp143I	GATC	2 cut(s)	511, 841
Bsp1720I	GCTNAGC	1 cut(s)	977
BspACI	CCGC	3 cut(s)	137, 197, 748
BspANI	GGCC	4 cut(s)	5, 133, 370, 754
BspCNI	CTCAG	5 cut(s)	396, 415, 892, 990, 1056
BspEI	TCCGGA	1 cut(s)	248
BspLI	GGNNCC	6 cut(s)	253, 353, 354, 513, 768, 843
BspPI	GGATC	4 cut(s)	506, 519, 836, 849
BspQI	GCTCTTC	1 cut(s)	815
BspT107I	GGYRCC	1 cut(s)	766
BsrDI	GCAATG	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	917
BsrI	ACTGG	2 cut(s)	515, 666
BssMI	GATC	2 cut(s)	511, 841
Bst2UI	CCWGG	2 cut(s)	218, 256
Bst4CI	ACNGT	6 cut(s)	42, 49, 285, 661, 679, 698
Bst6I	CTCTTC	1 cut(s)	815
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	917
BstBAI	YACGTR	1 cut(s)	616
BstC8I	GCNNGC	5 cut(s)	228, 291, 312, 493, 752
BstDEI	CTNAG	6 cut(s)	231, 383, 423, 879, 977, 1064
BstF5I	GGATG	1 cut(s)	444
BstKTI	GATC	2 cut(s)	514, 844
BstMBI	GATC	2 cut(s)	511, 841
BstMWI	GCNNNNNNNGC	8 cut(s)	25, 100, 139, 227, 236, 593, 728, 751
BstNI	CCWGG	2 cut(s)	218, 256
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	2 cut(s)	216, 254
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	4 cut(s)	126, 165, 743, 960
BstX2I	RGATCY	2 cut(s)	511, 841
BstYI	RGATCY	2 cut(s)	511, 841
BsuRI	GGCC	4 cut(s)	5, 133, 370, 754
BtsCI	GGATG	1 cut(s)	444
BtsI	GCAGTG	2 cut(s)	51, 717
BtsIMutI	CAGTG	6 cut(s)	51, 522, 673, 717, 845, 951
Cac8I	GCNNGC	5 cut(s)	228, 291, 312, 493, 752
CaiI	CAGNNNCTG	1 cut(s)	886
Cfr13I	GGNCC	4 cut(s)	131, 272, 352, 369
CseI	GACGC	1 cut(s)	915
CsiI	ACCWGGT	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	43, 918
CviAII	CATG	3 cut(s)	7, 290, 1074
CviQI	GTAC	2 cut(s)	43, 918
DdeI	CTNAG	6 cut(s)	231, 383, 423, 879, 977, 1064
DpnI	GATC	2 cut(s)	513, 843
DpnII	GATC	2 cut(s)	511, 841
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	815
EarI	CTCTTC	1 cut(s)	815
EciI	GGCGGA	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	384
Eco47I	GGWCC	2 cut(s)	272, 352
Eco57I	CTGAAG	1 cut(s)	44
Eco72I	CACGTG	1 cut(s)	616
EcoO109I	RGGNCCY	2 cut(s)	352, 369
EcoRI	GAATTC	1 cut(s)	75
EcoRII	CCWGG	2 cut(s)	216, 254
EcoT38I	GRGCYC	1 cut(s)	384
FaeI	CATG	3 cut(s)	10, 293, 1077
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	3 cut(s)	6, 289, 1073
FauNDI	CATATG	1 cut(s)	712
Fnu4HI	GCNGC	4 cut(s)	140, 179, 732, 974
FokI	GGATG	1 cut(s)	451
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	4 cut(s)	140, 179, 732, 974
FspBI	CTAG	3 cut(s)	114, 366, 560
GluI	GCNGC	4 cut(s)	140, 179, 732, 974
GsuI	CTGGAG	2 cut(s)	174, 1018
HaeIII	GGCC	4 cut(s)	5, 133, 370, 754
HapII	CCGG	1 cut(s)	249
HgaI	GACGC	1 cut(s)	915
Hin1II	CATG	3 cut(s)	10, 293, 1077
HinfI	GANTC	4 cut(s)	169, 298, 415, 782
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	1 cut(s)	616
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	8 cut(s)	35, 168, 386, 424, 438, 888, 967, 1065
Hpy188III	TCNNGA	7 cut(s)	22, 153, 249, 346, 484, 800, 997
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	2 cut(s)	208, 211
HpyAV	CCTTC	5 cut(s)	159, 263, 325, 371, 506
HpyCH4III	ACNGT	6 cut(s)	42, 49, 285, 661, 679, 698
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	7 cut(s)	103, 181, 289, 293, 543, 731, 1033
HpyF10VI	GCNNNNNNNGC	8 cut(s)	25, 100, 139, 227, 236, 593, 728, 751
HpyF3I	CTNAG	6 cut(s)	231, 383, 423, 879, 977, 1064
HpySE526I	ACGT	1 cut(s)	615
Hsp92II	CATG	3 cut(s)	10, 293, 1077
KflI	GGGWCCC	1 cut(s)	352
Kpn2I	TCCGGA	1 cut(s)	248
Kzo9I	GATC	2 cut(s)	511, 841
LguI	GCTCTTC	1 cut(s)	815
LmnI	GCTCC	5 cut(s)	24, 443, 568, 671, 750
Lsp1109I	GCAGC	4 cut(s)	126, 165, 743, 960
LweI	GCATC	2 cut(s)	454, 574
MabI	ACCWGGT	1 cut(s)	254
MaeI	CTAG	3 cut(s)	114, 366, 560
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	3 cut(s)	49, 451, 517
MalI	GATC	2 cut(s)	513, 843
MboI	GATC	2 cut(s)	511, 841
MboII	GAAGA	2 cut(s)	832, 883
MfeI	CAATTG	1 cut(s)	89
MflI	RGATCY	2 cut(s)	511, 841
MhlI	GDGCHC	3 cut(s)	40, 384, 615
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	75, 89, 528, 726, 956, 960
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	656, 693, 762, 810, 902, 959
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	139, 551, 750
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	2 cut(s)	218, 256
MunI	CAATTG	1 cut(s)	89
MvaI	CCWGG	2 cut(s)	218, 256
MwoI	GCNNNNNNNGC	8 cut(s)	25, 100, 139, 227, 236, 593, 728, 751
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	2 cut(s)	511, 841
NlaIII	CATG	3 cut(s)	10, 293, 1077
NlaIV	GGNNCC	6 cut(s)	253, 353, 354, 513, 768, 843
NmeAIII	GCCGAG	1 cut(s)	760
NmuCI	GTSAC	2 cut(s)	49, 517
NspI	RCATGY	1 cut(s)	293
PaeI	GCATGC	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	815
PfeI	GAWTC	4 cut(s)	169, 298, 415, 782
PflMI	CCANNNNNTGG	2 cut(s)	12, 851
PkrI	GCNGC	4 cut(s)	141, 180, 733, 975
PmaCI	CACGTG	1 cut(s)	616
PmlI	CACGTG	1 cut(s)	616
Ppu21I	YACGTR	1 cut(s)	616
PpuMI	RGGWCCY	1 cut(s)	352
PshBI	ATTAAT	1 cut(s)	959
Psp5II	RGGWCCY	1 cut(s)	352
Psp6I	CCWGG	2 cut(s)	216, 254
PspCI	CACGTG	1 cut(s)	616
PspGI	CCWGG	2 cut(s)	216, 254
PspN4I	GGNNCC	6 cut(s)	253, 353, 354, 513, 768, 843
PspPI	GGNCC	4 cut(s)	131, 272, 352, 369
PspPPI	RGGWCCY	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	886
PsuI	RGATCY	2 cut(s)	511, 841
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	2 cut(s)	44, 919
RsaNI	GTAC	2 cut(s)	43, 918
SapI	GCTCTTC	1 cut(s)	815
SaqAI	TTAA	6 cut(s)	656, 693, 762, 810, 902, 959
SatI	GCNGC	4 cut(s)	140, 179, 732, 974
Sau3AI	GATC	2 cut(s)	511, 841
Sau96I	GGNCC	4 cut(s)	131, 272, 352, 369
ScrFI	CCNGG	2 cut(s)	218, 256
SduI	GDGCHC	3 cut(s)	40, 384, 615
SexAI	ACCWGGT	1 cut(s)	254
SfaNI	GCATC	2 cut(s)	454, 574
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	2 cut(s)	272, 352
SphI	GCATGC	1 cut(s)	293
Sse9I	AATT	6 cut(s)	75, 89, 528, 726, 956, 960
SsiI	CCGC	3 cut(s)	137, 197, 748
SspMI	CTAG	3 cut(s)	114, 366, 560
StyD4I	CCNGG	2 cut(s)	216, 254
TaaI	ACNGT	6 cut(s)	42, 49, 285, 661, 679, 698
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	2 cut(s)	780, 1049
TasI	AATT	6 cut(s)	75, 89, 528, 726, 956, 960
TatI	WGTACW	1 cut(s)	917
TfiI	GAWTC	4 cut(s)	169, 298, 415, 782
Tru1I	TTAA	6 cut(s)	656, 693, 762, 810, 902, 959
Tru9I	TTAA	6 cut(s)	656, 693, 762, 810, 902, 959
TscAI	CASTG	6 cut(s)	58, 522, 673, 724, 852, 958
TseFI	GTSAC	2 cut(s)	49, 517
TseI	GCWGC	4 cut(s)	139, 178, 731, 973
Tsp45I	GTSAC	2 cut(s)	49, 517
TspDTI	ATGAA	3 cut(s)	307, 311, 796
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	6 cut(s)	58, 522, 673, 724, 852, 958
Van91I	CCANNNNNTGG	2 cut(s)	12, 851
VpaK11BI	GGWCC	2 cut(s)	272, 352
VspI	ATTAAT	1 cut(s)	959
XapI	RAATTY	1 cut(s)	75
XceI	RCATGY	1 cut(s)	293
XspI	CTAG	3 cut(s)	114, 366, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.