Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003217

Physical Location & Seq

Genomic Coordinates Reverse (-)

29727024 .. 29730135

Gene Structure 3112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCATGACTTGGAAGCTCCTGAAGCAACTCCGACCACTGCCCACCGCCACCGCCTCTTCCATCCTCCACCGTCCTCGATTCCTCAACTTGCACAATGCCACGCGGCTCTTCTCCGACGCGCCTCCTCCTCTGCCTCCTCCCTCCGTAGAGCCTCCGTCGATTCCACCGCCTCAAAACCCTCACTCTCCCTCGCCGTCGTCGCTCAACCAGACGGAACTCGCTAAGTTCGCCGCCATTGCCGGAACCTGGTGGGATTCAGAAGGACCATTCAAACCATTGCATGCGCTGAATCCTACAAGGCTCGCCTTCATTCGCTCCACGCTGTGTCGCCATTTCAGGAGGGATCCCTTATCTGCTAGGCCATTTGAAGGGCTTAAGTTTATTGATGTTGGCTGTGGTGGTGGAATTCTTTCTGAGCCTTTAGCACGGATGGGAGCTTCTGTAACAGGAGTTGATGCTGTTGAGAAAAATATCAAGATAGCTCGCCTTCATGCTGACTTGGATCCGGTGACCTCAAGCATTGAATATCATTGCACAACAGCTGAAAAACTAGTTGAGGAGCAGAGGAGTTTCGATGCTGTGTTTGCTTTAGAGGTTATTGAGCATGTGGCTAATCCTGCTGAGTTCTGCAAATCTCTGTCTGCCTTGACTGTTCCCGATGGAGCTACTTTGATTTCAACTATTAACCGTTCTATGAGAGCATATGCTACTGCAATTATTGCTGCCGAGTATATCCTCCACTGGCTTCCTAAAGGTACACATCAATGGTCCAGTTTCCTTACTCCTGAAGAACTAATCCTGATCCTGGAGCGTGCTTCTATTTCGGTCCAAGAGATGGCTGGATTTGCATACAACCCTTTGACAGGAAGATGGTCTTTATCCGATGATATTAGTGTAAACTTTATCGCTTATGCTACCAAAACAGAAACATCCACTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

315

Amino Acids

34.46

Weight (kDa)

6.56

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	114 - 273	1.1e-20	Methyltransferase domain
Methyltransf_31	PF13847	124 - 256	6.3e-14	Methyltransferase domain
CMAS	PF02353	124 - 246	3.7e-07	Mycolic acid cyclopropane synthetase
PrmA	PF06325	126 - 229	2.8e-07	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_11	PF08241	129 - 225	4.2e-19	Methyltransferase domain
Methyltransf_25	PF13649	129 - 222	3.4e-15	Methyltransferase domain
Methyltransf_12	PF08242	129 - 222	7.7e-12	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30920 AT2G30920
fragaria_vesca	FvH4_6g37760
malus_domestica	MD09G1156300.v1.1 MD17G1142800.v1.1
prunus_persica	Prupe.3G169300_v2.0.a1
pyrus_communis	pycom17g13580
rosa_chinensis	RchiOBHm_Chr2g0150821 RchiOBHm_Chr4g0446711 RchiOBHm_Chr7g0218911
rosa_laevigata	RLG00000002318 RLG00000002325 RLG00000002354 RLG00000005638 RLG00000020509
rosa_multiflora	Rmu_sc0001753.1_g000039 Rmu_sc0003823.1_g000004
rosa_roxburghii	Rroxscaffold_3G00240410
rosa_rugosa	Rorug02G0422600 Rorug04G0373900 Rorug07G0179700
rosa_samantha	Rh2AG482800 Rh2BG495400 Rh2CG469100 Rh2DG506200 Rh3BG339500 Rh4AG435400 Rh4BG444300 Rh4CG461600 Rh4DG443200 Rh7AG322900 Rh7BG314000 Rh7CG339700 Rh7DG320100
rosa_wichuraiana	Rw2G039570 Rw4G037220 Rw7G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	12, 838
AccII	CGCG	2 cut(s)	106, 122
AciI	CCGC	5 cut(s)	48, 54, 106, 170, 234
AclWI	GGATC	5 cut(s)	341, 354, 500, 513, 799
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	408
AcuI	CTGAAG	2 cut(s)	44, 810
AdeI	CACNNNGTG	1 cut(s)	327
AfaI	GTAC	1 cut(s)	760
AfiI	CCNNNNNNNGG	6 cut(s)	12, 249, 371, 808, 838, 866
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	4 cut(s)	274, 371, 527, 681
AhlI	ACTAGT	1 cut(s)	553
AjnI	CCWGG	2 cut(s)	248, 807
AluBI	AGCT	5 cut(s)	19, 440, 485, 545, 668
AluI	AGCT	5 cut(s)	19, 440, 485, 545, 668
AlwI	GGATC	5 cut(s)	341, 354, 500, 513, 799
AoxI	GGCC	2 cut(s)	3, 362
ApeKI	GCWGC	1 cut(s)	725
ApoI	RAATTY	1 cut(s)	408
Asp700I	GAANNNNTTC	1 cut(s)	412
AspLEI	GCGC	2 cut(s)	124, 289
AspS9I	GGNCC	3 cut(s)	266, 771, 829
AsuHPI	GGTGA	1 cut(s)	523
AvaII	GGWCC	3 cut(s)	266, 771, 829
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	346, 505
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	5 cut(s)	71, 427, 656, 832, 867
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	2 cut(s)	250, 809
BcuI	ACTAGT	1 cut(s)	553
BfaI	CTAG	2 cut(s)	360, 554
BfrI	CTTAAG	1 cut(s)	377
BisI	GCNGC	3 cut(s)	107, 234, 726
BlsI	GCNGC	3 cut(s)	108, 235, 727
Bme1390I	CCNGG	2 cut(s)	250, 809
Bme18I	GGWCC	3 cut(s)	266, 771, 829
BmgT120I	GGNCC	3 cut(s)	266, 771, 829
BmiI	GGNNCC	3 cut(s)	247, 348, 507
BmrFI	CCNGG	2 cut(s)	250, 809
BmsI	GCATC	2 cut(s)	448, 568
BpmI	CTGGAG	1 cut(s)	830
BpuEI	CTTGAG	1 cut(s)	502
BsaWI	WCCGGW	1 cut(s)	508
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bsc4I	CCNNNNNNNGG	6 cut(s)	12, 249, 371, 808, 838, 866
Bse1I	ACTGG	2 cut(s)	749, 774
Bse3DI	GCAATG	3 cut(s)	237, 278, 532
BseBI	CCWGG	2 cut(s)	250, 809
BseGI	GGATG	3 cut(s)	63, 438, 932
BseLI	CCNNNNNNNGG	6 cut(s)	12, 249, 371, 808, 838, 866
BseMI	GCAATG	3 cut(s)	237, 278, 532
BseMII	CTCAG	2 cut(s)	408, 615
BseNI	ACTGG	2 cut(s)	749, 774
BseRI	GAGGAG	5 cut(s)	117, 120, 129, 575, 583
BseXI	GCAGC	1 cut(s)	712
Bsh1236I	CGCG	2 cut(s)	106, 122
BshFI	GGCC	2 cut(s)	5, 364
BsiSI	CCGG	2 cut(s)	243, 509
BslI	CCNNNNNNNGG	6 cut(s)	12, 249, 371, 808, 838, 866
BsnI	GGCC	2 cut(s)	5, 364
Bsp143I	GATC	3 cut(s)	346, 505, 804
BspACI	CCGC	5 cut(s)	48, 54, 106, 170, 234
BspANI	GGCC	2 cut(s)	5, 364
BspCNI	CTCAG	2 cut(s)	409, 616
BspFNI	CGCG	2 cut(s)	106, 122
BspLI	GGNNCC	3 cut(s)	247, 348, 507
BspPI	GGATC	5 cut(s)	341, 354, 500, 513, 799
BspQI	GCTCTTC	1 cut(s)	116
BspTI	CTTAAG	1 cut(s)	377
BsrDI	GCAATG	3 cut(s)	237, 278, 532
BsrI	ACTGG	2 cut(s)	749, 774
BssMI	GATC	3 cut(s)	346, 505, 804
Bst2UI	CCWGG	2 cut(s)	250, 809
Bst4CI	ACNGT	3 cut(s)	74, 655, 692
Bst6I	CTCTTC	2 cut(s)	64, 116
BstAFI	CTTAAG	1 cut(s)	377
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstC8I	GCNNGC	4 cut(s)	285, 306, 487, 816
BstDEI	CTNAG	3 cut(s)	225, 417, 624
BstEII	GGTNACC	1 cut(s)	511
BstENI	CCTNNNNNAGG	1 cut(s)	864
BstF5I	GGATG	3 cut(s)	63, 438, 932
BstFNI	CGCG	2 cut(s)	106, 122
BstHHI	GCGC	2 cut(s)	124, 289
BstKTI	GATC	3 cut(s)	349, 508, 807
BstMBI	GATC	3 cut(s)	346, 505, 804
BstMWI	GCNNNNNNNGC	8 cut(s)	25, 202, 230, 239, 587, 620, 722, 848
BstNI	CCWGG	2 cut(s)	250, 809
BstNSI	RCATGY	2 cut(s)	287, 611
BstPI	GGTNACC	1 cut(s)	511
BstSCI	CCNGG	2 cut(s)	248, 807
BstUI	CGCG	2 cut(s)	106, 122
BstV1I	GCAGC	1 cut(s)	712
BstX2I	RGATCY	2 cut(s)	346, 505
BstYI	RGATCY	2 cut(s)	346, 505
BsuRI	GGCC	2 cut(s)	5, 364
BtsCI	GGATG	3 cut(s)	63, 438, 932
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	2 cut(s)	38, 742
Cac8I	GCNNGC	4 cut(s)	285, 306, 487, 816
CfoI	GCGC	2 cut(s)	124, 289
Cfr13I	GGNCC	3 cut(s)	266, 771, 829
CseI	GACGC	1 cut(s)	128
CsiI	ACCWGGT	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	759
CviAII	CATG	4 cut(s)	7, 284, 494, 608
CviQI	GTAC	1 cut(s)	759
DdeI	CTNAG	3 cut(s)	225, 417, 624
DpnI	GATC	3 cut(s)	348, 507, 806
DpnII	GATC	3 cut(s)	346, 505, 804
DraIII	CACNNNGTG	1 cut(s)	327
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	64, 116
EarI	CTCTTC	2 cut(s)	64, 116
Eco47I	GGWCC	3 cut(s)	266, 771, 829
Eco57I	CTGAAG	2 cut(s)	44, 810
Eco91I	GGTNACC	1 cut(s)	511
EcoNI	CCTNNNNNAGG	1 cut(s)	864
EcoO65I	GGTNACC	1 cut(s)	511
EcoRI	GAATTC	1 cut(s)	408
EcoRII	CCWGG	2 cut(s)	248, 807
FaeI	CATG	4 cut(s)	10, 287, 497, 611
FalI	AAGNNNNNCTT	2 cut(s)	862, 894
FatI	CATG	4 cut(s)	6, 283, 493, 607
FauNDI	CATATG	1 cut(s)	706
Fnu4HI	GCNGC	3 cut(s)	107, 234, 726
FokI	GGATG	3 cut(s)	50, 445, 919
Fsp4HI	GCNGC	3 cut(s)	107, 234, 726
FspBI	CTAG	2 cut(s)	360, 554
GlaI	GCGC	2 cut(s)	123, 288
GluI	GCNGC	3 cut(s)	107, 234, 726
GsuI	CTGGAG	1 cut(s)	830
HaeIII	GGCC	2 cut(s)	5, 364
HapII	CCGG	2 cut(s)	243, 509
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	2 cut(s)	124, 289
Hin1II	CATG	4 cut(s)	10, 287, 497, 611
Hin6I	GCGC	2 cut(s)	122, 287
HinP1I	GCGC	2 cut(s)	122, 287
HinfI	GANTC	4 cut(s)	81, 163, 257, 292
HpaII	CCGG	2 cut(s)	243, 509
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	2 cut(s)	761, 901
Hpy188I	TCNGA	5 cut(s)	35, 118, 262, 418, 886
Hpy188III	TCNNGA	6 cut(s)	22, 340, 478, 659, 788, 802
Hpy8I	GTNNAC	2 cut(s)	761, 901
Hpy99I	CGWCG	4 cut(s)	122, 163, 202, 205
HpyAV	CCTTC	4 cut(s)	257, 319, 365, 500
HpyCH4III	ACNGT	3 cut(s)	74, 655, 692
HpyCH4V	TGCA	6 cut(s)	94, 283, 537, 633, 716, 851
HpyF10VI	GCNNNNNNNGC	8 cut(s)	25, 202, 230, 239, 587, 620, 722, 848
HpyF3I	CTNAG	3 cut(s)	225, 417, 624
Hsp92II	CATG	4 cut(s)	10, 287, 497, 611
HspAI	GCGC	2 cut(s)	122, 287
Kzo9I	GATC	3 cut(s)	346, 505, 804
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	6 cut(s)	24, 323, 437, 562, 665, 811
Lsp1109I	GCAGC	1 cut(s)	712
LweI	GCATC	2 cut(s)	448, 568
MabI	ACCWGGT	1 cut(s)	248
MaeI	CTAG	2 cut(s)	360, 554
MaeIII	GTNAC	2 cut(s)	445, 511
MalI	GATC	3 cut(s)	348, 507, 806
MboI	GATC	3 cut(s)	346, 505, 804
MboII	GAAGA	4 cut(s)	51, 103, 803, 882
MflI	RGATCY	2 cut(s)	346, 505
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	408, 717
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	58, 141
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	412
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	378, 687
MslI	CAYNNNNRTG	1 cut(s)	766
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	545
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	2 cut(s)	243, 509
MspR9I	CCNGG	2 cut(s)	250, 809
MvaI	CCWGG	2 cut(s)	250, 809
MvnI	CGCG	2 cut(s)	106, 122
MwoI	GCNNNNNNNGC	8 cut(s)	25, 202, 230, 239, 587, 620, 722, 848
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	3 cut(s)	346, 505, 804
NlaIII	CATG	4 cut(s)	10, 287, 497, 611
NlaIV	GGNNCC	3 cut(s)	247, 348, 507
NmeAIII	GCCGAG	1 cut(s)	754
NmuCI	GTSAC	1 cut(s)	511
NspI	RCATGY	2 cut(s)	287, 611
PaeI	GCATGC	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	412
PfeI	GAWTC	4 cut(s)	81, 163, 257, 292
PflMI	CCANNNNNTGG	2 cut(s)	12, 838
PfoI	TCCNGGA	1 cut(s)	807
PkrI	GCNGC	3 cut(s)	108, 235, 727
Psp6I	CCWGG	2 cut(s)	248, 807
PspEI	GGTNACC	1 cut(s)	511
PspGI	CCWGG	2 cut(s)	248, 807
PspN4I	GGNNCC	3 cut(s)	247, 348, 507
PspPI	GGNCC	3 cut(s)	266, 771, 829
PsuI	RGATCY	2 cut(s)	346, 505
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	1 cut(s)	760
RsaNI	GTAC	1 cut(s)	759
RseI	CAYNNNNRTG	1 cut(s)	766
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	378, 687
SatI	GCNGC	3 cut(s)	107, 234, 726
Sau3AI	GATC	3 cut(s)	346, 505, 804
Sau96I	GGNCC	3 cut(s)	266, 771, 829
ScrFI	CCNGG	2 cut(s)	250, 809
SetI	ASST	9 cut(s)	21, 251, 442, 487, 518, 547, 600, 670, 760
SexAI	ACCWGGT	1 cut(s)	248
SfaNI	GCATC	2 cut(s)	448, 568
SinI	GGWCC	3 cut(s)	266, 771, 829
SmiMI	CAYNNNNRTG	1 cut(s)	766
SmlI	CTYRAG	2 cut(s)	377, 517
SmoI	CTYRAG	2 cut(s)	377, 517
SpeI	ACTAGT	1 cut(s)	553
SphI	GCATGC	1 cut(s)	287
Sse9I	AATT	2 cut(s)	408, 717
SsiI	CCGC	5 cut(s)	48, 54, 106, 170, 234
SspMI	CTAG	2 cut(s)	360, 554
StyD4I	CCNGG	2 cut(s)	248, 807
TaaI	ACNGT	3 cut(s)	74, 655, 692
TaqI	TCGA	3 cut(s)	79, 161, 576
TaqII	GACCGA	1 cut(s)	817
TasI	AATT	2 cut(s)	408, 717
TauI	GCSGC	2 cut(s)	109, 236
TfiI	GAWTC	4 cut(s)	81, 163, 257, 292
Tru1I	TTAA	2 cut(s)	378, 687
Tru9I	TTAA	2 cut(s)	378, 687
TscAI	CASTG	2 cut(s)	45, 749
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	3 cut(s)	301, 482, 930
TspGWI	ACGGA	4 cut(s)	136, 147, 230, 445
TspRI	CASTG	2 cut(s)	45, 749
Van91I	CCANNNNNTGG	2 cut(s)	12, 838
Vha464I	CTTAAG	1 cut(s)	377
VpaK11BI	GGWCC	3 cut(s)	266, 771, 829
XagI	CCTNNNNNAGG	1 cut(s)	864
XapI	RAATTY	1 cut(s)	408
XceI	RCATGY	2 cut(s)	287, 611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	839
XmnI	GAANNNNTTC	1 cut(s)	412
XspI	CTAG	2 cut(s)	360, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.