Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003217

Physical Location & Seq

Genomic Coordinates Forward (+)

36314735 .. 36318075

Gene Structure 3341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG339500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAATCCTACAAGGCTCGCCTTCATTCGCTCAACGCTGTGTCATCATTTCAGGAGGGATCCATTATCTGCTAGGCCATTTGAAGGGCTCATGTTTATTGATGTTGGCTGTGGTGGTGGAATTCTGTCTGAGCCTTTAGCACGCATGGGAGCTTCTGTGATTGGAGTTGATGCTGTTGAGAAAAATATCAAGATAGCTCGCCTTCATGCTGACTTGGATCCAGTGACCTCAAGCATTGAATATCATTGCACAACAGCTGAAAAATTAGTGGAGGAGCAGAGGAGTTTTGATGCTGTGTTTGCTCTAGAGGTAATTGAGCACGTGGCGAATCCTGCTGAGTTCTGCAAATCTCTGTCTGCCTTAACTGTTCCTGATGGAGCTACTGTGATTTCAACTATTAACCGTTCTATGAGAGCATATGCTACTGCAATTATTGGTATGTCAGCCCTTTGTGTGATTTGGGTCTTGTATTATCTTAGAAACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

162

Amino Acids

17.79

Weight (kDa)

6.29

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	20 - 137	4.6e-17	Methyltransferase domain
Methyltransf_31	PF13847	28 - 134	8.9e-14	Methyltransferase domain
CMAS	PF02353	28 - 138	2e-07	Mycolic acid cyclopropane synthetase
PrmA	PF06325	31 - 133	5.3e-08	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_11	PF08241	33 - 130	1.3e-19	Methyltransferase domain
Methyltransf_25	PF13649	33 - 126	1.2e-15	Methyltransferase domain
Methyltransf_12	PF08242	33 - 126	5e-12	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30920 AT2G30920
fragaria_vesca	FvH4_6g37760
malus_domestica	MD09G1156300.v1.1 MD17G1142800.v1.1
prunus_persica	Prupe.3G169300_v2.0.a1
pyrus_communis	pycom17g13580
rosa_chinensis	RchiOBHm_Chr2g0150821 RchiOBHm_Chr4g0446711 RchiOBHm_Chr7g0218911
rosa_laevigata	RLG00000002318 RLG00000002325 RLG00000002354 RLG00000005638 RLG00000020509
rosa_multiflora	Rmu_sc0001753.1_g000039 Rmu_sc0003823.1_g000004
rosa_roxburghii	Rroxscaffold_3G00240410
rosa_rugosa	Rorug02G0422600 Rorug04G0373900 Rorug07G0179700
rosa_samantha	Rh2AG482800 Rh2BG495400 Rh2CG469100 Rh2DG506200 Rh3BG339500 Rh4AG435400 Rh4BG444300 Rh4CG461600 Rh4DG443200 Rh7AG322900 Rh7BG314000 Rh7CG339700 Rh7DG320100
rosa_wichuraiana	Rw2G039570 Rw4G037220 Rw7G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	53, 66, 212, 225
AcsI	RAATTY	1 cut(s)	120
AcvI	CACGTG	1 cut(s)	322
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	3 cut(s)	83, 239, 393
AluBI	AGCT	4 cut(s)	152, 197, 257, 380
AluI	AGCT	4 cut(s)	152, 197, 257, 380
Alw21I	GWGCWC	1 cut(s)	321
AlwI	GGATC	4 cut(s)	53, 66, 212, 225
AoxI	GGCC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	120
BamHI	GGATCC	2 cut(s)	58, 217
BanII	GRGCYC	1 cut(s)	90
BbrPI	CACGTG	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	321
BccI	CCATC	1 cut(s)	368
BfaI	CTAG	2 cut(s)	72, 305
BmiI	GGNNCC	2 cut(s)	60, 219
BmsI	GCATC	2 cut(s)	160, 280
BpuEI	CTTGAG	1 cut(s)	214
BsaAI	YACGTR	1 cut(s)	322
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 369, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	2 cut(s)	120, 327
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	2 cut(s)	287, 295
BshFI	GGCC	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	83
BsnI	GGCC	1 cut(s)	76
Bsp1286I	GDGCHC	2 cut(s)	90, 321
Bsp143I	GATC	2 cut(s)	58, 217
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	2 cut(s)	121, 328
BspLI	GGNNCC	2 cut(s)	60, 219
BspPI	GGATC	4 cut(s)	53, 66, 212, 225
BsrDI	GCAATG	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	221
BssMI	GATC	2 cut(s)	58, 217
Bst4CI	ACNGT	3 cut(s)	367, 385, 404
BstBAI	YACGTR	1 cut(s)	322
BstC8I	GCNNGC	3 cut(s)	18, 142, 199
BstDEI	CTNAG	3 cut(s)	129, 336, 476
BstKTI	GATC	2 cut(s)	61, 220
BstMBI	GATC	2 cut(s)	58, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 332
BstX2I	RGATCY	2 cut(s)	58, 217
BstYI	RGATCY	2 cut(s)	58, 217
BsuRI	GGCC	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	18, 142, 199
CviAII	CATG	3 cut(s)	91, 145, 206
DdeI	CTNAG	3 cut(s)	129, 336, 476
DpnI	GATC	2 cut(s)	60, 219
DpnII	GATC	2 cut(s)	58, 217
Eco24I	GRGCYC	1 cut(s)	90
Eco72I	CACGTG	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	90
FaeI	CATG	3 cut(s)	94, 148, 209
FaiI	YATR	7 cut(s)	92, 146, 207, 410, 418, 420, 440
FatI	CATG	3 cut(s)	90, 144, 205
FauNDI	CATATG	1 cut(s)	418
FriOI	GRGCYC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	72, 305
HaeIII	GGCC	1 cut(s)	76
Hin1II	CATG	3 cut(s)	94, 148, 209
HinfI	GANTC	2 cut(s)	4, 328
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	4 cut(s)	52, 190, 305, 371
HpyAV	CCTTC	3 cut(s)	31, 77, 212
HpyCH4III	ACNGT	3 cut(s)	367, 385, 404
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	249, 345, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 332
HpyF3I	CTNAG	3 cut(s)	129, 336, 476
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	3 cut(s)	94, 148, 209
Kzo9I	GATC	2 cut(s)	58, 217
LmnI	GCTCC	3 cut(s)	149, 274, 377
LpnPI	CCDG	4 cut(s)	37, 234, 345, 384
LweI	GCATC	2 cut(s)	160, 280
MaeI	CTAG	2 cut(s)	72, 305
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	60, 219
MboI	GATC	2 cut(s)	58, 217
MflI	RGATCY	2 cut(s)	58, 217
MhlI	GDGCHC	2 cut(s)	90, 321
MluCI	AATT	4 cut(s)	120, 263, 312, 429
MnlI	CCTC	5 cut(s)	48, 238, 265, 273, 301
MseI	TTAA	2 cut(s)	362, 399
MspA1I	CMGCKG	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	299, 332
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	2 cut(s)	58, 217
NlaIII	CATG	3 cut(s)	94, 148, 209
NlaIV	GGNNCC	2 cut(s)	60, 219
NmuCI	GTSAC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	4, 328
PmaCI	CACGTG	1 cut(s)	322
PmlI	CACGTG	1 cut(s)	322
Ppu21I	YACGTR	1 cut(s)	322
PspCI	CACGTG	1 cut(s)	322
PspN4I	GGNNCC	2 cut(s)	60, 219
PsuI	RGATCY	2 cut(s)	58, 217
PvuII	CAGCTG	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	362, 399
Sau3AI	GATC	2 cut(s)	58, 217
SduI	GDGCHC	2 cut(s)	90, 321
SetI	ASST	7 cut(s)	154, 199, 230, 259, 312, 324, 382
SfaNI	GCATC	2 cut(s)	160, 280
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	4 cut(s)	120, 263, 312, 429
SspMI	CTAG	2 cut(s)	72, 305
TaaI	ACNGT	3 cut(s)	367, 385, 404
TaiI	ACGT	1 cut(s)	324
TasI	AATT	4 cut(s)	120, 263, 312, 429
TfiI	GAWTC	2 cut(s)	4, 328
Tru1I	TTAA	2 cut(s)	362, 399
Tru9I	TTAA	2 cut(s)	362, 399
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	3 cut(s)	13, 17, 194
TspRI	CASTG	1 cut(s)	228
XapI	RAATTY	1 cut(s)	120
XbaI	TCTAGA	1 cut(s)	304
XspI	CTAG	2 cut(s)	72, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.