Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003885

Physical Location & Seq

Genomic Coordinates Forward (+)

14550614 .. 14552339

Gene Structure 1726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTTCTACATTTCTTCAAGGCCATACTCAAAAACTCACCCTTCCTTTATCTCATTTCACTTCCACACATAAACCAACTCTTAGATTCCAAAACATATATATTGGTTTCCCCTCCAATGGAGGTCAAAGCCGCCGTTTGATCATCAGATCACCAATCACGGTCGCCAAATCAAACAGCAAGAATGATTCTCACGATGATAAAAAGCAATTAAGGCCATTGAAAATGGCGGCGGGAGCATCCCTAGCACTAGCTTGCGCCATAAGTATCTTTGGCTTTAAGATAAATAATATGAGCTACACTGCCGCGGCAGCTGCCTATCCAAGCTCTGCCGACATGATCATATCCGGGAAGCCGACTTCAGCCGCATCCGCTACTTCCGGTATCTATCCTTTCCCAGCTAAATTCGCATTGCGGTCTCTCTTTGAAGTTAGCTCAATGCTTGCTTCGGCTAAACCCATTCCTTCTCAAAAACCATTCAATCTTCACAAGCTCCCTTCTTTGCCTTCAAAGGACGATATTGACTCCATCAAGATGGAGGCGGTACGGAAGATGAAGGAAGGAAAATGTGAAGAGGCGGTGCAGCTCCTTCGTGACGCAAACATGCGATACAGAAACGAGCCTGAGGCCAACTTCAACGTGCAGATGGCTCTTGTTGAAATTTTAATATTGCTGGAAAGGTATCAAGAAGCTGCTGAGTATAGTTGTCTAAATGACGAGAATGCCCAAATTTCTGATGTTCGGATCCCTCTTTATAAGTACAGGCAATTATATACACGATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

261

Amino Acids

29.0

Weight (kDa)

9.5

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34540 AT2G34540
fragaria_vesca	FvH4_3g05540 FvH4_3g05550
prunus_persica	Prupe.4G080600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014121 RchiOBHm_Chr5g0014151 RchiOBHm_Chr5g0014161
rosa_laevigata	RLG00000032083 RLG00000032086 RLG00000032087 RLG00000032173
rosa_multiflora	Rmu_sc0007767.1_g000023 Rmu_sc0027898.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062440 Rroxscaffold_1G00062450 Rroxscaffold_1G00062490
rosa_rugosa	Rorug05G0015800 Rorug05G0016100 Rorug05G0024500
rosa_samantha	Rh5AG109900 Rh5AG110000 Rh5BG106600 Rh5BG106800 Rh5BG107000 Rh5BG107100 Rh5BG116900 Rh5CG118500 Rh5CG119000 Rh5DG105300 Rh5DG105500 Rh5DG105600
rosa_wichuraiana	Rw5G009600 Rw5G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	756
AccII	CGCG	1 cut(s)	308
AclWI	GGATC	2 cut(s)	739, 752
AcsI	RAATTY	3 cut(s)	404, 660, 729
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	2 cut(s)	546, 761
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	7 cut(s)	20, 223, 428, 481, 510, 637, 659
AluBI	AGCT	9 cut(s)	254, 297, 314, 327, 401, 435, 493, 586, 692
AluI	AGCT	9 cut(s)	254, 297, 314, 327, 401, 435, 493, 586, 692
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	2 cut(s)	739, 752
AoxI	GGCC	3 cut(s)	22, 215, 627
ApeKI	GCWGC	4 cut(s)	311, 314, 583, 692
ApoI	RAATTY	3 cut(s)	404, 660, 729
AspLEI	GCGC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	2 cut(s)	31, 144
AxyI	CCTNAGG	1 cut(s)	624
BamHI	GGATCC	1 cut(s)	744
BbvI	GCAGC	4 cut(s)	301, 323, 595, 679
BccI	CCATC	3 cut(s)	529, 536, 640
BceAI	ACGGC	1 cut(s)	120
BcgI	CGANNNNNNTGC	2 cut(s)	572, 606
BclI	TGATCA	2 cut(s)	141, 339
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	2 cut(s)	245, 251
BisI	GCNGC	9 cut(s)	133, 231, 306, 309, 312, 315, 366, 584, 693
BlsI	GCNGC	9 cut(s)	134, 232, 307, 310, 313, 316, 367, 585, 694
Bme1390I	CCNGG	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	746
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	2 cut(s)	248, 377
BpuMI	CCSGG	1 cut(s)	349
BsaI	GGTCTC	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse21I	CCTNAGG	1 cut(s)	624
Bse3DI	GCAATG	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	239, 368
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMI	GCAATG	1 cut(s)	410
BseMII	CTCAG	2 cut(s)	615, 687
BseXI	GCAGC	4 cut(s)	301, 323, 595, 679
BseYI	CCCAGC	1 cut(s)	397
BsgI	GTGCAG	2 cut(s)	602, 662
Bsh1236I	CGCG	1 cut(s)	308
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	3 cut(s)	24, 217, 629
BsiEI	CGRYCG	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	348, 381
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	423
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	3 cut(s)	24, 217, 629
Bso31I	GGTCTC	1 cut(s)	423
Bsp143I	GATC	4 cut(s)	141, 149, 339, 744
BspANI	GGCC	3 cut(s)	24, 217, 629
BspCNI	CTCAG	2 cut(s)	616, 688
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	1 cut(s)	746
BspPI	GGATC	2 cut(s)	739, 752
BspTNI	GGTCTC	1 cut(s)	423
BsrDI	GCAATG	1 cut(s)	410
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	4 cut(s)	141, 149, 339, 744
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	567
BstC8I	GCNNGC	2 cut(s)	256, 444
BstDEI	CTNAG	3 cut(s)	83, 624, 696
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	239, 368
BstFNI	CGCG	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	4 cut(s)	144, 152, 342, 747
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	4 cut(s)	141, 149, 339, 744
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	7 cut(s)	214, 236, 245, 311, 314, 371, 407
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	1 cut(s)	347
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	4 cut(s)	301, 323, 595, 679
BstX2I	RGATCY	1 cut(s)	744
BstXI	CCANNNNNNTGG	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	744
Bsu36I	CCTNAGG	1 cut(s)	624
BsuRI	GGCC	3 cut(s)	24, 217, 629
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	239, 368
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	2 cut(s)	256, 444
CfoI	GCGC	1 cut(s)	260
Cfr42I	CCGCGG	1 cut(s)	309
CseI	GACGC	1 cut(s)	605
Csp6I	GTAC	2 cut(s)	545, 760
CviAII	CATG	2 cut(s)	337, 604
CviQI	GTAC	2 cut(s)	545, 760
DdeI	CTNAG	3 cut(s)	83, 624, 696
DpnI	GATC	4 cut(s)	143, 151, 341, 746
DpnII	GATC	4 cut(s)	141, 149, 339, 744
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
Eco31I	GGTCTC	1 cut(s)	423
Eco57I	CTGAAG	1 cut(s)	345
Eco81I	CCTNAGG	1 cut(s)	624
FaeI	CATG	2 cut(s)	340, 607
FatI	CATG	2 cut(s)	336, 603
FauI	CCCGC	1 cut(s)	226
FbaI	TGATCA	2 cut(s)	141, 339
Fnu4HI	GCNGC	9 cut(s)	133, 231, 306, 309, 312, 315, 366, 584, 693
FokI	GGATG	2 cut(s)	226, 355
Fsp4HI	GCNGC	9 cut(s)	133, 231, 306, 309, 312, 315, 366, 584, 693
FspBI	CTAG	2 cut(s)	245, 251
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	9 cut(s)	133, 231, 306, 309, 312, 315, 366, 584, 693
GsaI	CCCAGC	1 cut(s)	401
HaeIII	GGCC	3 cut(s)	24, 217, 629
HapII	CCGG	2 cut(s)	348, 381
HgaI	GACGC	1 cut(s)	605
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	2 cut(s)	340, 607
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HinfI	GANTC	3 cut(s)	87, 188, 524
HpaII	CCGG	2 cut(s)	348, 381
HphI	GGTGA	2 cut(s)	31, 144
Hpy188I	TCNGA	3 cut(s)	149, 736, 744
Hpy188III	TCNNGA	4 cut(s)	194, 532, 593, 686
HpyAV	CCTTC	7 cut(s)	53, 474, 507, 516, 550, 554, 599
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	2 cut(s)	583, 643
HpyF10VI	GCNNNNNNNGC	7 cut(s)	214, 236, 245, 311, 314, 371, 407
HpyF3I	CTNAG	3 cut(s)	83, 624, 696
HpySE526I	ACGT	1 cut(s)	639
Hsp92II	CATG	2 cut(s)	340, 607
HspAI	GCGC	1 cut(s)	258
Ksp22I	TGATCA	2 cut(s)	141, 339
KspI	CCGCGG	1 cut(s)	309
Kzo9I	GATC	4 cut(s)	141, 149, 339, 744
LmnI	GCTCC	3 cut(s)	236, 498, 591
LpnPI	CCDG	6 cut(s)	361, 394, 411, 636, 659, 748
Lsp1109I	GCAGC	4 cut(s)	301, 323, 595, 679
LweI	GCATC	2 cut(s)	248, 377
MaeI	CTAG	2 cut(s)	245, 251
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	4 cut(s)	143, 151, 341, 746
MboI	GATC	4 cut(s)	141, 149, 339, 744
MboII	GAAGA	4 cut(s)	8, 476, 562, 584
MflI	RGATCY	1 cut(s)	744
MluCI	AATT	5 cut(s)	209, 404, 660, 729, 767
MlyI	GAGTC	1 cut(s)	518
MnlI	CCTC	6 cut(s)	116, 124, 532, 568, 619, 759
MseI	TTAA	3 cut(s)	212, 279, 665
MslI	CAYNNNNRTG	1 cut(s)	533
MspA1I	CMGCKG	2 cut(s)	308, 314
MspI	CCGG	2 cut(s)	348, 381
MspR9I	CCNGG	1 cut(s)	349
Mva1269I	GAATGC	1 cut(s)	727
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	7 cut(s)	214, 236, 245, 311, 314, 371, 407
NciI	CCSGG	1 cut(s)	349
NdeII	GATC	4 cut(s)	141, 149, 339, 744
NlaIII	CATG	2 cut(s)	340, 607
NlaIV	GGNNCC	1 cut(s)	746
NmuCI	GTSAC	1 cut(s)	593
NspI	RCATGY	1 cut(s)	607
PctI	GAATGC	1 cut(s)	727
PfeI	GAWTC	2 cut(s)	87, 188
PfoI	TCCNGGA	1 cut(s)	347
PkrI	GCNGC	9 cut(s)	134, 232, 307, 310, 313, 316, 367, 585, 694
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
PsiI	TTATAA	1 cut(s)	756
PspFI	CCCAGC	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	746
PsuI	RGATCY	1 cut(s)	744
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	2 cut(s)	546, 761
RsaNI	GTAC	2 cut(s)	545, 760
RseI	CAYNNNNRTG	1 cut(s)	533
SacII	CCGCGG	1 cut(s)	309
SaqAI	TTAA	3 cut(s)	212, 279, 665
SatI	GCNGC	9 cut(s)	133, 231, 306, 309, 312, 315, 366, 584, 693
Sau3AI	GATC	4 cut(s)	141, 149, 339, 744
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	1 cut(s)	349
SfaNI	GCATC	2 cut(s)	248, 377
Sfr303I	CCGCGG	1 cut(s)	309
SgrBI	CCGCGG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	533
Sse9I	AATT	5 cut(s)	209, 404, 660, 729, 767
SspI	AATATT	1 cut(s)	669
SspMI	CTAG	2 cut(s)	245, 251
StyD4I	CCNGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	1 cut(s)	642
TasI	AATT	5 cut(s)	209, 404, 660, 729, 767
TatI	WGTACW	1 cut(s)	759
TauI	GCSGC	5 cut(s)	135, 233, 308, 311, 368
TfiI	GAWTC	2 cut(s)	87, 188
Tru1I	TTAA	3 cut(s)	212, 279, 665
Tru9I	TTAA	3 cut(s)	212, 279, 665
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	4 cut(s)	311, 314, 583, 692
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	1 cut(s)	569
TspGWI	ACGGA	1 cut(s)	562
TspRI	CASTG	1 cut(s)	307
XapI	RAATTY	3 cut(s)	404, 660, 729
XceI	RCATGY	1 cut(s)	607
XspI	CTAG	2 cut(s)	245, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.