Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003885

Physical Location & Seq

Genomic Coordinates Forward (+)

9949583 .. 9962965

Gene Structure 13383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG107100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGACTCTGCACTTTGTCCCCATCGTGGTGCTCTACACATTCCTTCCACCACTAGCCGTGCAGCCGGATTAGCAAGGCCTCATTCCAGTTTCGAACCTTCTTCTCTTTCACTTTTTTCAAAGGCTTCCACATACCCCATCCTATCGCGACACACCTTCTGTAGTCCTGTGATATGTGCACTTAACAAGCCCTCGCCGCCTTCCCCAAACTACGACAAAGACAATGGTAAAAGAATTGTGATAGTAGTGGGGGGTGCTTCTGTAGTTTTGGCTTGTGTCCTTGGAGTCATCAACTACAACTTCAATTTCATTCCCACAGCCATTGCAGCCCCTCAAAGGAGTCGAAGTTCGTCGCCCACACGTGAAGAAAGCGCAGTGGGACCAGTCTTGACTAGGCCGAAAGACGTGTTAGATTCATTGTTGAAGGTGAATAGACAAATAGCCACATCGATATCCGAGAGTAAATGGAGGCTGTTCAAACCGACACCGCAGCAGCTGTCTATGCCTGCGACACCTTCATCGCAAGATTGTGAAAATTTTAAGGTTCTCTGTTGGGTTGTTGTGACCGGCTGTGATTATCTCGACATATGCGGAGAGCCAGAGTTCATGGAGAGGATTGAGGCCAGTTATTTCGATAAGGCGGCGGAGAAGGGCTCGTTGGTCATTTCGGCTTGTGGGTTCGACTCTATTCGGGTGGAGTTTGGCTTGATGTTTAACTCAAGGCAGTGGGTGGGGGCGGCGGTGCCGAATAGGGTGGACGCTAATCTGAGCTTTGAATCTGAGAAGAGAATTGTTGGGAACTTTGGGATGTTTGAGTCGGCGGTGTTGGGTGTGGCTAATGCGGATAAGTTGATGGAGCTCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

288

Amino Acids

31.35

Weight (kDa)

8.05

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34540 AT2G34540
fragaria_vesca	FvH4_3g05540 FvH4_3g05550
prunus_persica	Prupe.4G080600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014121 RchiOBHm_Chr5g0014151 RchiOBHm_Chr5g0014161
rosa_laevigata	RLG00000032083 RLG00000032086 RLG00000032087 RLG00000032173
rosa_multiflora	Rmu_sc0007767.1_g000023 Rmu_sc0027898.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062440 Rroxscaffold_1G00062450 Rroxscaffold_1G00062490
rosa_rugosa	Rorug05G0015800 Rorug05G0016100 Rorug05G0024500
rosa_samantha	Rh5AG109900 Rh5AG110000 Rh5BG106600 Rh5BG106800 Rh5BG107000 Rh5BG107100 Rh5BG116900 Rh5CG118500 Rh5CG119000 Rh5DG105300 Rh5DG105500 Rh5DG105600
rosa_wichuraiana	Rw5G009600 Rw5G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	742
AccII	CGCG	1 cut(s)	148
AciI	CCGC	9 cut(s)	197, 488, 591, 641, 644, 737, 740, 821, 842
AcsI	RAATTY	1 cut(s)	535
AcvI	CACGTG	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	26, 336
AflIII	ACRYGT	2 cut(s)	359, 405
AgsI	TTSAA	5 cut(s)	120, 304, 424, 478, 776
AjiI	CACGTC	1 cut(s)	406
AjuI	GAANNNNNNNTTGG	2 cut(s)	641, 673
AloI	GAACNNNNNNTCC	2 cut(s)	331, 363
AluBI	AGCT	3 cut(s)	496, 771, 859
AluI	AGCT	3 cut(s)	496, 771, 859
Alw21I	GWGCWC	3 cut(s)	34, 181, 861
Alw44I	GTGCAC	1 cut(s)	177
AlwNI	CAGNNNCTG	1 cut(s)	496
AoxI	GGCC	3 cut(s)	77, 395, 621
ApaLI	GTGCAC	1 cut(s)	177
ApeKI	GCWGC	4 cut(s)	62, 326, 490, 493
ApoI	RAATTY	1 cut(s)	535
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	380
AsuHPI	GGTGA	1 cut(s)	439
AsuII	TTCGAA	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	742
BanII	GRGCYC	2 cut(s)	656, 861
BbrPI	CACGTG	1 cut(s)	362
Bbv12I	GWGCWC	3 cut(s)	34, 181, 861
BbvI	GCAGC	4 cut(s)	74, 338, 502, 505
BccI	CCATC	3 cut(s)	30, 146, 847
BceAI	ACGGC	1 cut(s)	42
BfaI	CTAG	2 cut(s)	54, 393
BfmI	CTRYAG	2 cut(s)	160, 261
BisI	GCNGC	7 cut(s)	63, 197, 327, 491, 494, 642, 738
BlsI	GCNGC	7 cut(s)	64, 198, 328, 492, 495, 643, 739
Bme18I	GGWCC	1 cut(s)	380
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	2 cut(s)	381, 744
BplI	GAGNNNNNCTC	2 cut(s)	638, 670
Bpu14I	TTCGAA	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	703
Bsa29I	ATCGAT	1 cut(s)	449
BsaAI	YACGTR	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	280
BsaXI	ACNNNNNCTCC	3 cut(s)	331, 361, 848
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 336
Bse118I	RCCGGY	1 cut(s)	566
Bse1I	ACTGG	3 cut(s)	87, 383, 624
Bse3DI	GCAATG	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	449
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	2 cut(s)	138, 813
BseLI	CCNNNNNNNGG	2 cut(s)	26, 336
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	758, 771
BseNI	ACTGG	3 cut(s)	87, 383, 624
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	4 cut(s)	74, 338, 502, 505
BsgI	GTGCAG	1 cut(s)	81
Bsh1236I	CGCG	1 cut(s)	148
BshFI	GGCC	3 cut(s)	79, 397, 623
BshNI	GGYRCC	1 cut(s)	742
BshVI	ATCGAT	1 cut(s)	449
BsiHKAI	GWGCWC	3 cut(s)	34, 181, 861
BsiSI	CCGG	2 cut(s)	66, 567
BslFI	GGGAC	2 cut(s)	3, 393
BslI	CCNNNNNNNGG	2 cut(s)	26, 336
BsmFI	GGGAC	2 cut(s)	3, 393
BsnI	GGCC	3 cut(s)	79, 397, 623
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	4 cut(s)	34, 181, 656, 861
Bsp68I	TCGCGA	1 cut(s)	148
BspACI	CCGC	9 cut(s)	197, 488, 591, 641, 644, 737, 740, 821, 842
BspANI	GGCC	3 cut(s)	79, 397, 623
BspCNI	CTCAG	2 cut(s)	759, 772
BspDI	ATCGAT	1 cut(s)	449
BspFNI	CGCG	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	381, 744
BspT104I	TTCGAA	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	742
BsrDI	GCAATG	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	566
BsrI	ACTGG	3 cut(s)	87, 383, 624
BssAI	RCCGGY	1 cut(s)	566
BssECI	CCNNGG	1 cut(s)	280
BssT1I	CCWWGG	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	779
BstBAI	YACGTR	1 cut(s)	362
BstBI	TTCGAA	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	767, 780
BstF5I	GGATG	2 cut(s)	138, 813
BstFNI	CGCG	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	374
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 196, 326, 502
BstSFI	CTRYAG	2 cut(s)	160, 261
BstSLI	GKGCMC	1 cut(s)	181
BstUI	CGCG	1 cut(s)	148
BstV1I	GCAGC	4 cut(s)	74, 338, 502, 505
Bsu15I	ATCGAT	1 cut(s)	449
BsuRI	GGCC	3 cut(s)	79, 397, 623
BsuTUI	ATCGAT	1 cut(s)	449
BtgZI	GCGATG	1 cut(s)	504
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	138, 813
BtsI	GCAGTG	2 cut(s)	381, 731
BtsIMutI	CAGTG	2 cut(s)	381, 731
BtuMI	TCGCGA	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	507
CaiI	CAGNNNCTG	1 cut(s)	496
CfoI	GCGC	1 cut(s)	374
Cfr10I	RCCGGY	1 cut(s)	566
Cfr13I	GGNCC	1 cut(s)	380
ClaI	ATCGAT	1 cut(s)	449
CseI	GACGC	1 cut(s)	767
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	1 cut(s)	607
DdeI	CTNAG	2 cut(s)	767, 780
Eam1104I	CTCTTC	1 cut(s)	779
EarI	CTCTTC	1 cut(s)	779
EciI	GGCGGA	1 cut(s)	659
Ecl136II	GAGCTC	1 cut(s)	859
Eco130I	CCWWGG	1 cut(s)	280
Eco147I	AGGCCT	1 cut(s)	79
Eco24I	GRGCYC	2 cut(s)	656, 861
Eco32I	GATATC	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	859
Eco72I	CACGTG	1 cut(s)	362
EcoICRI	GAGCTC	1 cut(s)	859
EcoRV	GATATC	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	280
EcoT38I	GRGCYC	2 cut(s)	656, 861
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	1 cut(s)	610
FaiI	YATR	6 cut(s)	133, 175, 503, 587, 589, 608
FaqI	GGGAC	2 cut(s)	3, 393
FatI	CATG	1 cut(s)	606
FauNDI	CATATG	1 cut(s)	587
Fnu4HI	GCNGC	7 cut(s)	63, 197, 327, 491, 494, 642, 738
FokI	GGATG	2 cut(s)	125, 820
FriOI	GRGCYC	2 cut(s)	656, 861
Fsp4HI	GCNGC	7 cut(s)	63, 197, 327, 491, 494, 642, 738
FspBI	CTAG	2 cut(s)	54, 393
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	7 cut(s)	63, 197, 327, 491, 494, 642, 738
HaeIII	GGCC	3 cut(s)	79, 397, 623
HapII	CCGG	2 cut(s)	66, 567
HgaI	GACGC	1 cut(s)	767
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	1 cut(s)	610
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HinfI	GANTC	7 cut(s)	5, 285, 340, 413, 683, 776, 815
HpaII	CCGG	2 cut(s)	66, 567
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	2 cut(s)	179, 757
Hpy188I	TCNGA	3 cut(s)	457, 768, 781
Hpy188III	TCNNGA	3 cut(s)	147, 388, 581
Hpy8I	GTNNAC	2 cut(s)	179, 757
Hpy99I	CGWCG	1 cut(s)	355
HpyAV	CCTTC	7 cut(s)	54, 108, 166, 210, 418, 525, 643
HpyCH4IV	ACGT	2 cut(s)	361, 405
HpyCH4V	TGCA	4 cut(s)	11, 62, 179, 326
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 196, 326, 502
HpyF3I	CTNAG	2 cut(s)	767, 780
HpySE526I	ACGT	2 cut(s)	361, 405
Hsp92II	CATG	1 cut(s)	610
HspAI	GCGC	1 cut(s)	372
LmnI	GCTCC	1 cut(s)	856
LpnPI	CCDG	9 cut(s)	79, 100, 180, 396, 519, 580, 612, 637, 847
Lsp1109I	GCAGC	4 cut(s)	74, 338, 502, 505
MaeI	CTAG	2 cut(s)	54, 393
MaeII	ACGT	2 cut(s)	361, 405
MaeIII	GTNAC	1 cut(s)	562
MboII	GAAGA	3 cut(s)	93, 377, 796
MhlI	GDGCHC	4 cut(s)	34, 181, 656, 861
MluCI	AATT	4 cut(s)	234, 304, 535, 789
MlyI	GAGTC	4 cut(s)	294, 349, 677, 824
MnlI	CCTC	6 cut(s)	90, 202, 342, 462, 606, 613
MseI	TTAA	3 cut(s)	183, 540, 714
MslI	CAYNNNNRTG	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	496
MspI	CCGG	2 cut(s)	66, 567
MvnI	CGCG	1 cut(s)	148
MwoI	GCNNNNNNNGC	4 cut(s)	71, 196, 326, 502
NdeI	CATATG	1 cut(s)	587
NlaIII	CATG	1 cut(s)	610
NlaIV	GGNNCC	2 cut(s)	381, 744
NmuCI	GTSAC	1 cut(s)	562
NruI	TCGCGA	1 cut(s)	148
NspV	TTCGAA	1 cut(s)	93
PceI	AGGCCT	1 cut(s)	79
PfeI	GAWTC	2 cut(s)	413, 776
PkrI	GCNGC	7 cut(s)	64, 198, 328, 492, 495, 643, 739
PleI	GAGTC	4 cut(s)	293, 348, 677, 823
PmaCI	CACGTG	1 cut(s)	362
PmlI	CACGTG	1 cut(s)	362
PpsI	GAGTC	4 cut(s)	293, 348, 677, 823
Ppu21I	YACGTR	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	861
PspCI	CACGTG	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	381, 744
PspPI	GGNCC	1 cut(s)	380
PstNI	CAGNNNCTG	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	496
RruI	TCGCGA	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	27
SacI	GAGCTC	1 cut(s)	861
SaqAI	TTAA	3 cut(s)	183, 540, 714
SatI	GCNGC	7 cut(s)	63, 197, 327, 491, 494, 642, 738
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	4 cut(s)	294, 349, 677, 824
SduI	GDGCHC	4 cut(s)	34, 181, 656, 861
SfcI	CTRYAG	2 cut(s)	160, 261
SfuI	TTCGAA	1 cut(s)	93
SinI	GGWCC	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	718
SmoI	CTYRAG	1 cut(s)	718
Sse9I	AATT	4 cut(s)	234, 304, 535, 789
SseBI	AGGCCT	1 cut(s)	79
SsiI	CCGC	9 cut(s)	197, 488, 591, 641, 644, 737, 740, 821, 842
SspMI	CTAG	2 cut(s)	54, 393
SstI	GAGCTC	1 cut(s)	861
StuI	AGGCCT	1 cut(s)	79
StyI	CCWWGG	1 cut(s)	280
TaiI	ACGT	2 cut(s)	364, 408
TaqI	TCGA	6 cut(s)	93, 343, 449, 582, 633, 681
TasI	AATT	4 cut(s)	234, 304, 535, 789
TauI	GCSGC	3 cut(s)	199, 644, 740
TfiI	GAWTC	2 cut(s)	413, 776
Tru1I	TTAA	3 cut(s)	183, 540, 714
Tru9I	TTAA	3 cut(s)	183, 540, 714
TscAI	CASTG	2 cut(s)	381, 731
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	4 cut(s)	62, 326, 490, 493
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	4 cut(s)	298, 405, 507, 595
TspRI	CASTG	2 cut(s)	381, 731
VneI	GTGCAC	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	380
XapI	RAATTY	1 cut(s)	535
XspI	CTAG	2 cut(s)	54, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.