Rmu_sc0007767.1_g000023

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007767.1
OG0003885
Physical Location & Seq
Forward (+)
96262 .. 96795
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007767.1_g000023.1.cds

Sequence Viewer

Length: 534 bp
atgatggactctgcactttgtctccgtagtggtgctctacacattccttccaccactagccaagcagccggattagcaaggccttattccagtttcagaccttcttctctttcacttttttcaaaggcttccacataccgcaccctatcgcgacacaccttcagtaggcctgtgacatgtgcacttaacaagccctctccaccttcgccaaactatgacagagacaatggtaaaaaaattgtgatagtagtgggaggtgcttctgtagttttggcttgtgtccttggagtcatcaactacaacttcaatttcagtccagcagccattgcagcccctatggtcgagtctaggccgaaagccgcgttagattcattgttgacggtgaacaaatatttagccacatccaagagtacatggagcgtgttcagatcgacaccacagctgtatattcccgagacacctacaaacgaggactattccaatcttaaggttctgttcgccctacacccagtagctaaattttgctattgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.2

Weight (kDa)

9.61

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 151, 362
AciI CCGC 2 cut(s) 139, 360
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 1 cut(s) 145
AfaI GTAC 1 cut(s) 412
AfiI CCNNNNNNNGG 1 cut(s) 165
AflII CTTAAG 1 cut(s) 485
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 2 cut(s) 123, 307
AluBI AGCT 2 cut(s) 442, 515
AluI AGCT 2 cut(s) 442, 515
Alw21I GWGCWC 2 cut(s) 37, 184
Alw26I GTCTC 3 cut(s) 26, 216, 449
Alw44I GTGCAC 1 cut(s) 180
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 3 cut(s) 80, 167, 350
ApaLI GTGCAC 1 cut(s) 180
ApeKI GCWGC 3 cut(s) 65, 320, 329
ApoI RAATTY 1 cut(s) 518
AsuHPI GGTGA 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 452
BaeGI GKGCMC 1 cut(s) 184
Bbv12I GWGCWC 2 cut(s) 37, 184
BbvI GCAGC 3 cut(s) 77, 332, 341
BcoDI GTCTC 3 cut(s) 26, 216, 449
BfaI CTAG 2 cut(s) 57, 348
BfmI CTRYAG 1 cut(s) 264
BfrI CTTAAG 1 cut(s) 485
BisI GCNGC 4 cut(s) 66, 321, 330, 360
BlsI GCNGC 4 cut(s) 67, 322, 331, 361
BmeT110I CYCGRG 1 cut(s) 452
BmrI ACTGGG 1 cut(s) 503
BmuI ACTGGG 1 cut(s) 503
BsaJI CCNNGG 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 2 cut(s) 90, 509
Bse3DI GCAATG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMI GCAATG 1 cut(s) 324
BseNI ACTGG 2 cut(s) 90, 509
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 3 cut(s) 77, 332, 341
Bsh1236I CGCG 2 cut(s) 151, 362
BshFI GGCC 3 cut(s) 82, 169, 352
BsiHKAI GWGCWC 2 cut(s) 37, 184
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 3 cut(s) 26, 216, 449
BsnI GGCC 3 cut(s) 82, 169, 352
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 2 cut(s) 37, 184
Bsp143I GATC 1 cut(s) 428
Bsp68I TCGCGA 1 cut(s) 151
BspACI CCGC 2 cut(s) 139, 360
BspANI GGCC 3 cut(s) 82, 169, 352
BspFNI CGCG 2 cut(s) 151, 362
BspTI CTTAAG 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 2 cut(s) 90, 509
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 1 cut(s) 428
BssT1I CCWWGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 382
BstAFI CTTAAG 1 cut(s) 485
BstAPI GCANNNNNTGC 1 cut(s) 326
BstENI CCTNNNNNAGG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 401
BstFNI CGCG 2 cut(s) 151, 362
BstKTI GATC 1 cut(s) 431
BstMAI GTCTC 3 cut(s) 26, 216, 449
BstMBI GATC 1 cut(s) 428
BstMWI GCNNNNNNNGC 3 cut(s) 74, 326, 329
BstNSI RCATGY 1 cut(s) 180
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 184
BstUI CGCG 2 cut(s) 151, 362
BstV1I GCAGC 3 cut(s) 77, 332, 341
BsuRI GGCC 3 cut(s) 82, 169, 352
BtsCI GGATG 1 cut(s) 401
BtuMI TCGCGA 1 cut(s) 151
Csp6I GTAC 1 cut(s) 411
CviAII CATG 2 cut(s) 177, 414
CviQI GTAC 1 cut(s) 411
DpnI GATC 1 cut(s) 430
DpnII GATC 1 cut(s) 428
Eco130I CCWWGG 1 cut(s) 283
Eco147I AGGCCT 2 cut(s) 82, 169
Eco57I CTGAAG 1 cut(s) 145
Eco88I CYCGRG 1 cut(s) 452
EcoNI CCTNNNNNAGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 2 cut(s) 180, 417
FaiI YATR 6 cut(s) 136, 178, 216, 338, 415, 447
FatI CATG 2 cut(s) 176, 413
Fnu4HI GCNGC 4 cut(s) 66, 321, 330, 360
FokI GGATG 1 cut(s) 388
Fsp4HI GCNGC 4 cut(s) 66, 321, 330, 360
FspBI CTAG 2 cut(s) 57, 348
GluI GCNGC 4 cut(s) 66, 321, 330, 360
HaeIII GGCC 3 cut(s) 82, 169, 352
HapII CCGG 1 cut(s) 69
Hin1II CATG 2 cut(s) 180, 417
HincII GTYRAC 1 cut(s) 378
HindII GTYRAC 1 cut(s) 378
HinfI GANTC 4 cut(s) 8, 288, 344, 368
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 3 cut(s) 182, 378, 385
Hpy188I TCNGA 2 cut(s) 98, 428
Hpy188III TCNNGA 2 cut(s) 150, 452
Hpy8I GTNNAC 3 cut(s) 182, 378, 385
HpyAV CCTTC 4 cut(s) 57, 111, 169, 213
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4V TGCA 3 cut(s) 14, 182, 329
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 326, 329
Hsp92II CATG 2 cut(s) 180, 417
Kzo9I GATC 1 cut(s) 428
LmnI GCTCC 1 cut(s) 417
LpnPI CCDG 5 cut(s) 82, 103, 183, 330, 522
Lsp1109I GCAGC 3 cut(s) 77, 332, 341
MaeI CTAG 2 cut(s) 57, 348
MaeIII GTNAC 1 cut(s) 172
MalI GATC 1 cut(s) 430
MboI GATC 1 cut(s) 428
MboII GAAGA 1 cut(s) 96
MhlI GDGCHC 2 cut(s) 37, 184
MluCI AATT 3 cut(s) 237, 307, 518
MlyI GAGTC 3 cut(s) 2, 297, 353
MnlI CCTC 3 cut(s) 205, 248, 463
MseI TTAA 2 cut(s) 186, 486
MspA1I CMGCKG 1 cut(s) 442
MspCI CTTAAG 1 cut(s) 485
MspI CCGG 1 cut(s) 69
MvnI CGCG 2 cut(s) 151, 362
MwoI GCNNNNNNNGC 3 cut(s) 74, 326, 329
NdeII GATC 1 cut(s) 428
NlaIII CATG 2 cut(s) 180, 417
NmuCI GTSAC 1 cut(s) 172
NruI TCGCGA 1 cut(s) 151
NspI RCATGY 1 cut(s) 180
PceI AGGCCT 2 cut(s) 82, 169
PciI ACATGT 1 cut(s) 176
PfeI GAWTC 1 cut(s) 368
PkrI GCNGC 4 cut(s) 67, 322, 331, 361
PleI GAGTC 3 cut(s) 2, 296, 352
PpsI GAGTC 3 cut(s) 2, 296, 352
PscI ACATGT 1 cut(s) 176
PvuII CAGCTG 1 cut(s) 442
RruI TCGCGA 1 cut(s) 151
RsaI GTAC 1 cut(s) 412
RsaNI GTAC 1 cut(s) 411
SaqAI TTAA 2 cut(s) 186, 486
SatI GCNGC 4 cut(s) 66, 321, 330, 360
Sau3AI GATC 1 cut(s) 428
SchI GAGTC 3 cut(s) 2, 297, 353
SduI GDGCHC 2 cut(s) 37, 184
SetI ASST 8 cut(s) 103, 161, 205, 259, 444, 463, 492, 517
SfcI CTRYAG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 3 cut(s) 237, 307, 518
SseBI AGGCCT 2 cut(s) 82, 169
SsiI CCGC 2 cut(s) 139, 360
SspI AATATT 1 cut(s) 392
SspMI CTAG 2 cut(s) 57, 348
StuI AGGCCT 2 cut(s) 82, 169
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 382
TaqI TCGA 2 cut(s) 342, 431
TasI AATT 3 cut(s) 237, 307, 518
TatI WGTACW 1 cut(s) 410
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 2 cut(s) 186, 486
Tru9I TTAA 2 cut(s) 186, 486
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 3 cut(s) 65, 320, 329
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 360
TspGWI ACGGA 1 cut(s) 14
Vha464I CTTAAG 1 cut(s) 485
VneI GTGCAC 1 cut(s) 180
XagI CCTNNNNNAGG 1 cut(s) 163
XapI RAATTY 1 cut(s) 518
XceI RCATGY 1 cut(s) 180
XspI CTAG 2 cut(s) 57, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.