Rh5BG106600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003885
Physical Location & Seq
Forward (+)
9790298 .. 9798549
8252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG106600.1

Sequence Viewer

Length: 384 bp
ATGCCAAGAGATCACGACTATGACAATCTTGAGATTGCAGTAGCGGATTTAATCAAGTCCGGAATGTGCAATGAGGCAGAGAGACAACTTATTAATTTATACAACAAAACCTCTAAGAAAAAAGGGCCTCATCAGGCAAAAGATGTGGAGATGGAATTGGTACTAGTTCTCATTTTCCAGGGAAAATACGAAAAGGCTTTGGAACGTGGTTGTCTCAGTGATGATGCCATGGTTGGTTCGGATGGTCGAGTTCATTTTTACAAGGCTGTAATCATACTTGGGTTTAACGTGTCCGACGACATCAGAAGGATGCTTCAACTAAGAGATTTTCTTGGACATTTTGATTGGTCAAGAAAAGTAAGGGGTTTAGGTTTCCGACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.67

Weight (kDa)

8.57

Isoelectric Point (pI)

32.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 59
AciI CCGC 1 cut(s) 44
AfaI GTAC 1 cut(s) 162
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 1 cut(s) 317
AhlI ACTAGT 1 cut(s) 163
AjnI CCWGG 1 cut(s) 177
Alw26I GTCTC 2 cut(s) 76, 218
Aor13HI TCCGGA 1 cut(s) 59
AoxI GGCC 1 cut(s) 125
AseI ATTAAT 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 125
BccI CCATC 2 cut(s) 145, 236
BciT130I CCWGG 1 cut(s) 179
BcoDI GTCTC 2 cut(s) 76, 218
BcuI ACTAGT 1 cut(s) 163
BfaI CTAG 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 2 cut(s) 214, 300
BpuEI CTTGAG 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 178, 228
BsaWI WCCGGW 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 76
BseAI TCCGGA 1 cut(s) 59
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 2 cut(s) 178, 228
BseGI GGATG 2 cut(s) 247, 315
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 229
BshFI GGCC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 60
BsmAI GTCTC 2 cut(s) 76, 218
BsnI GGCC 1 cut(s) 127
Bsp13I TCCGGA 1 cut(s) 59
Bsp143I GATC 1 cut(s) 10
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 1 cut(s) 228
BspEI TCCGGA 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 178, 228
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 179
BstDEI CTNAG 3 cut(s) 114, 215, 320
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 247, 315
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 2 cut(s) 76, 218
BstMBI GATC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BsuRI GGCC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 2 cut(s) 247, 315
BtsIMutI CAGTG 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 161
CspCI CAANNNNNGTGG 2 cut(s) 126, 161
CviAII CATG 1 cut(s) 229
CviJI RGCY 3 cut(s) 127, 197, 266
CviKI_1 RGCY 3 cut(s) 127, 197, 266
CviQI GTAC 1 cut(s) 161
DdeI CTNAG 3 cut(s) 114, 215, 320
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 228
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 1 cut(s) 232
FaiI YATR 4 cut(s) 21, 100, 230, 275
FatI CATG 1 cut(s) 228
FokI GGATG 2 cut(s) 254, 322
FspBI CTAG 1 cut(s) 164
HaeIII GGCC 1 cut(s) 127
HapII CCGG 1 cut(s) 60
Hin1II CATG 1 cut(s) 232
HpaII CCGG 1 cut(s) 60
Hpy188I TCNGA 4 cut(s) 241, 295, 305, 377
Hpy188III TCNNGA 4 cut(s) 14, 29, 60, 351
Hpy99I CGWCG 2 cut(s) 299, 381
HpyAV CCTTC 1 cut(s) 300
HpyCH4IV ACGT 2 cut(s) 205, 288
HpyCH4V TGCA 2 cut(s) 38, 69
HpyF3I CTNAG 3 cut(s) 114, 215, 320
HpySE526I ACGT 2 cut(s) 205, 288
Hsp92II CATG 1 cut(s) 232
Kpn2I TCCGGA 1 cut(s) 59
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 4 cut(s) 73, 119, 164, 191
LweI GCATC 2 cut(s) 214, 300
MaeI CTAG 1 cut(s) 164
MaeII ACGT 2 cut(s) 205, 288
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MluCI AATT 2 cut(s) 94, 155
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 3 cut(s) 67, 121, 138
MroI TCCGGA 1 cut(s) 59
MseI TTAA 3 cut(s) 50, 93, 285
MslI CAYNNNNRTG 1 cut(s) 18
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
NcoI CCATGG 1 cut(s) 228
NdeII GATC 1 cut(s) 10
NlaIII CATG 1 cut(s) 232
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PshBI ATTAAT 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspPI GGNCC 1 cut(s) 125
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 3 cut(s) 50, 93, 285
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 179
SetI ASST 4 cut(s) 113, 208, 291, 373
SfaNI GCATC 2 cut(s) 214, 300
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SpeI ACTAGT 1 cut(s) 163
Sse9I AATT 2 cut(s) 94, 155
SsiI CCGC 1 cut(s) 44
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 228
TaiI ACGT 2 cut(s) 208, 291
TaqI TCGA 1 cut(s) 247
TasI AATT 2 cut(s) 94, 155
Tru1I TTAA 3 cut(s) 50, 93, 285
Tru9I TTAA 3 cut(s) 50, 93, 285
TscAI CASTG 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 242
TspRI CASTG 1 cut(s) 223
VspI ATTAAT 1 cut(s) 93
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.