Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003885

Physical Location & Seq

Genomic Coordinates Forward (+)

9558532 .. 9558801

Gene Structure 270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG105300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGATGGACTCTGCACTTTTTCTCCATCGCGGTGCTCTCAACATTCCTTCCACCACTAGCCGTGCAGCCAGATTAGCAAGGCCTTATTCTAGTTTCAGACCTTCTTCTCTTTCACTTTTTTCAAAGGCTTCCACATACCCCACCCTATCGCGACACACCTTCAGTAGTCCTGTGATATGTGTACTTAACAAGCAGCCCTCGCCACCTTCGCCGAATTACGACAAAGACAAAGGATCGAGGCACAAGTTGCCAGAATCCAGTACAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

89

Amino Acids

9.75

Weight (kDa)

10.43

Isoelectric Point (pI)

82.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34540 AT2G34540
fragaria_vesca	FvH4_3g05540 FvH4_3g05550
prunus_persica	Prupe.4G080600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014121 RchiOBHm_Chr5g0014151 RchiOBHm_Chr5g0014161
rosa_laevigata	RLG00000032083 RLG00000032086 RLG00000032087 RLG00000032173
rosa_multiflora	Rmu_sc0007767.1_g000023 Rmu_sc0027898.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062440 Rroxscaffold_1G00062450 Rroxscaffold_1G00062490
rosa_rugosa	Rorug05G0015800 Rorug05G0016100 Rorug05G0024500
rosa_samantha	Rh5AG109900 Rh5AG110000 Rh5BG106600 Rh5BG106800 Rh5BG107000 Rh5BG107100 Rh5BG116900 Rh5CG118500 Rh5CG119000 Rh5DG105300 Rh5DG105500 Rh5DG105600
rosa_wichuraiana	Rw5G009600 Rw5G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	30, 151
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	145
AfaI	GTAC	2 cut(s)	183, 262
AgsI	TTSAA	1 cut(s)	123
Alw21I	GWGCWC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	241
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	65, 193
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	77, 205
BccI	CCATC	1 cut(s)	33
BceAI	ACGGC	1 cut(s)	45
BfaI	CTAG	2 cut(s)	57, 90
BisI	GCNGC	2 cut(s)	66, 194
BlsI	GCNGC	2 cut(s)	67, 195
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bse1I	ACTGG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	258
BseXI	GCAGC	2 cut(s)	77, 205
BsgI	GTGCAG	1 cut(s)	84
Bsh1236I	CGCG	2 cut(s)	30, 151
BshFI	GGCC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	233
Bsp68I	TCGCGA	1 cut(s)	151
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	1 cut(s)	82
BspFNI	CGCG	2 cut(s)	30, 151
BspPI	GGATC	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	233
BstAPI	GCANNNNNTGC	1 cut(s)	247
BstFNI	CGCG	2 cut(s)	30, 151
BstKTI	GATC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 199, 208, 247
BstUI	CGCG	2 cut(s)	30, 151
BstV1I	GCAGC	2 cut(s)	77, 205
BsuRI	GGCC	1 cut(s)	82
BtgZI	GCGATG	1 cut(s)	11
BtuMI	TCGCGA	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	182, 261
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	5 cut(s)	60, 68, 82, 128, 196
CviKI_1	RGCY	5 cut(s)	60, 68, 82, 128, 196
CviQI	GTAC	2 cut(s)	182, 261
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
Eco147I	AGGCCT	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	145
FaeI	CATG	1 cut(s)	270
FaiI	YATR	3 cut(s)	136, 178, 268
FatI	CATG	1 cut(s)	266
Fnu4HI	GCNGC	2 cut(s)	66, 194
Fsp4HI	GCNGC	2 cut(s)	66, 194
FspBI	CTAG	2 cut(s)	57, 90
GluI	GCNGC	2 cut(s)	66, 194
HaeIII	GGCC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	270
HinfI	GANTC	2 cut(s)	8, 254
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	1 cut(s)	150
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	4 cut(s)	57, 111, 169, 216
HpyCH4V	TGCA	2 cut(s)	14, 65
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 199, 208, 247
Hsp92II	CATG	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	233
LpnPI	CCDG	3 cut(s)	82, 183, 264
Lsp1109I	GCAGC	2 cut(s)	77, 205
MaeI	CTAG	2 cut(s)	57, 90
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	1 cut(s)	214
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	2 cut(s)	208, 231
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	30
MvnI	CGCG	2 cut(s)	30, 151
MwoI	GCNNNNNNNGC	4 cut(s)	74, 199, 208, 247
NdeII	GATC	1 cut(s)	233
NlaIII	CATG	1 cut(s)	270
NruI	TCGCGA	1 cut(s)	151
PceI	AGGCCT	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	67, 195
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
RruI	TCGCGA	1 cut(s)	151
RsaI	GTAC	2 cut(s)	183, 262
RsaNI	GTAC	2 cut(s)	182, 261
RseI	CAYNNNNRTG	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	2 cut(s)	66, 194
Sau3AI	GATC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	2
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	3 cut(s)	103, 161, 208
SmiMI	CAYNNNNRTG	1 cut(s)	30
Sse9I	AATT	1 cut(s)	214
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	2 cut(s)	57, 90
StuI	AGGCCT	1 cut(s)	82
TaqI	TCGA	1 cut(s)	236
TasI	AATT	1 cut(s)	214
TatI	WGTACW	2 cut(s)	181, 260
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TseI	GCWGC	2 cut(s)	65, 193
XspI	CTAG	2 cut(s)	57, 90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.