Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003885

Physical Location & Seq

Genomic Coordinates Reverse (-)

3261579 .. 3263914

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGACTCAGCACTTTGTCTCCATCATGGTGCTCTACGCATTCCTTCCACCACTAGATATGCCGCCGGATTAGCAAGGCCTTACTCCAGTTTCAGACCTTCTTCTCTTTCACTTGTCTCGAAGGCTTCCACATACCGCACCCAGGCGCAGCACAGCTTCACTAGTCCTTTGATATGTGCACTGAACAATCCCATACCACCTTCGCCAAACTACGACAAAGACAATGGTAAAAACATTGTGCTAGTGGTGGGGTGTGCTTCTGTAGTATTAGCTTGTGTCCTTGGAGTCATCAACTGCAAGTCCAATTTCAGTATCAGAGCCACTGCAGCCGAAAGACGTCCTCGAGCTACTGATTCGTTGACACAGGAAGGAGACACATTGGTCCTGTCTAGGCCGAAAGGCGTGTTAAATTCATTGTTGAGGTTGAATAGACCTTTGGCCATACAGAAGGGTAAATGGTACTCATCAACACCGAAGCTGGAGATTCCTGATGAGCTTCCTGAGAGACCTACACAGGAAGATCGTGAAAAACTTAAGACCGCAGTAGCGCATTTAATCCAGTCCGGAAAGTGCAATGAGGCAGAGACACAACTTAAAGCTTTATTGAGCAAGACTAAAGGAGGTGAACCTGCAAGGGATGTGGAAATGGAATTGGTACCAGTTCTCATTTTCCAGGAAAAATACGAAGAAGCTTTGCAATGTAATTGTCTTAGAGATGATAGCCGTATTTCAACAGATGGTCGAGACCATTTTTACAAGGCTATTATCCACACCATGCTAGGCCAGGATGTTGATGCTGTCAAGTGCTGGAACACCTTCGTCTCATCCTTTTCCAATCAGGACATGCTGAACGCCCCATCTGAGGTTACTAATCGAAAGACAGACAGAATACTGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

300

Amino Acids

33.11

Weight (kDa)

8.92

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34540 AT2G34540
fragaria_vesca	FvH4_3g05540 FvH4_3g05550
prunus_persica	Prupe.4G080600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014121 RchiOBHm_Chr5g0014151 RchiOBHm_Chr5g0014161
rosa_laevigata	RLG00000032083 RLG00000032086 RLG00000032087 RLG00000032173
rosa_multiflora	Rmu_sc0007767.1_g000023 Rmu_sc0027898.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062440 Rroxscaffold_1G00062450 Rroxscaffold_1G00062490
rosa_rugosa	Rorug05G0015800 Rorug05G0016100 Rorug05G0024500
rosa_samantha	Rh5AG109900 Rh5AG110000 Rh5BG106600 Rh5BG106800 Rh5BG107000 Rh5BG107100 Rh5BG116900 Rh5CG118500 Rh5CG119000 Rh5DG105300 Rh5DG105500 Rh5DG105600
rosa_wichuraiana	Rw5G009600 Rw5G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	380
AatII	GACGTC	1 cut(s)	340
Acc36I	ACCTGC	1 cut(s)	637
Acc65I	GGTACC	1 cut(s)	655
AccB1I	GGYRCC	1 cut(s)	655
AccIII	TCCGGA	1 cut(s)	563
AciI	CCGC	3 cut(s)	63, 136, 540
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	1 cut(s)	409
AcyI	GRCGYC	1 cut(s)	337
AfaI	GTAC	2 cut(s)	461, 657
AfiI	CCNNNNNNNGG	2 cut(s)	142, 862
AflII	CTTAAG	1 cut(s)	533
AgsI	TTSAA	2 cut(s)	427, 732
AhlI	ACTAGT	1 cut(s)	161
AjnI	CCWGG	3 cut(s)	141, 672, 783
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	7 cut(s)	156, 272, 347, 478, 496, 599, 692
AluI	AGCT	7 cut(s)	156, 272, 347, 478, 496, 599, 692
Alw21I	GWGCWC	2 cut(s)	34, 181
Alw26I	GTCTC	7 cut(s)	23, 121, 366, 499, 578, 738, 826
Alw44I	GTGCAC	1 cut(s)	177
Ama87I	CYCGRG	1 cut(s)	342
Aor13HI	TCCGGA	1 cut(s)	563
AoxI	GGCC	4 cut(s)	77, 392, 438, 781
ApaLI	GTGCAC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	148, 326
ApoI	RAATTY	1 cut(s)	409
Asp700I	GAANNNNTTC	1 cut(s)	815
Asp718I	GGTACC	1 cut(s)	655
AspLEI	GCGC	3 cut(s)	148, 550, 897
AspS9I	GGNCC	1 cut(s)	382
AsuHPI	GGTGA	1 cut(s)	635
AvaI	CYCGRG	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	382
BaeGI	GKGCMC	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	440
BanI	GGYRCC	1 cut(s)	655
Bbv12I	GWGCWC	2 cut(s)	34, 181
BbvI	GCAGC	2 cut(s)	160, 338
BccI	CCATC	3 cut(s)	30, 731, 865
BceAI	ACGGC	1 cut(s)	708
BciT130I	CCWGG	3 cut(s)	143, 674, 785
BcoDI	GTCTC	7 cut(s)	23, 121, 366, 499, 578, 738, 826
BcuI	ACTAGT	1 cut(s)	161
BfaI	CTAG	5 cut(s)	54, 162, 242, 390, 779
BfmI	CTRYAG	2 cut(s)	261, 324
BfrI	CTTAAG	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	637
BisI	GCNGC	3 cut(s)	63, 149, 327
BlsI	GCNGC	3 cut(s)	64, 150, 328
Bme1390I	CCNGG	3 cut(s)	143, 674, 785
Bme18I	GGWCC	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	1 cut(s)	657
BmrFI	CCNGG	3 cut(s)	143, 674, 785
BmsI	GCATC	1 cut(s)	784
BpmI	CTGGAG	2 cut(s)	70, 500
BsaHI	GRCGYC	1 cut(s)	337
BsaI	GGTCTC	2 cut(s)	499, 738
BsaJI	CCNNGG	2 cut(s)	141, 280
BsaWI	WCCGGW	1 cut(s)	563
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 862
Bse1I	ACTGG	3 cut(s)	87, 559, 659
Bse3DI	GCAATG	2 cut(s)	580, 704
BseAI	TCCGGA	1 cut(s)	563
BseBI	CCWGG	3 cut(s)	143, 674, 785
BseDI	CCNNGG	2 cut(s)	141, 280
BseGI	GGATG	3 cut(s)	643, 793, 824
BseLI	CCNNNNNNNGG	2 cut(s)	142, 862
BseMI	GCAATG	2 cut(s)	580, 704
BseMII	CTCAG	3 cut(s)	21, 492, 852
BseNI	ACTGG	3 cut(s)	87, 559, 659
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	2 cut(s)	160, 338
BshFI	GGCC	4 cut(s)	79, 394, 440, 783
BshNI	GGYRCC	1 cut(s)	655
BsiHKAI	GWGCWC	2 cut(s)	34, 181
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	66, 564
BslI	CCNNNNNNNGG	2 cut(s)	142, 862
BsmAI	GTCTC	7 cut(s)	23, 121, 366, 499, 578, 738, 826
BsmBI	CGTCTC	1 cut(s)	826
BsmI	GAATGC	1 cut(s)	39
BsnI	GGCC	4 cut(s)	79, 394, 440, 783
Bso31I	GGTCTC	2 cut(s)	499, 738
BsoBI	CYCGRG	1 cut(s)	342
Bsp1286I	GDGCHC	2 cut(s)	34, 181
Bsp13I	TCCGGA	1 cut(s)	563
Bsp143I	GATC	1 cut(s)	520
BspACI	CCGC	3 cut(s)	63, 136, 540
BspANI	GGCC	4 cut(s)	79, 394, 440, 783
BspCNI	CTCAG	3 cut(s)	20, 493, 853
BspEI	TCCGGA	1 cut(s)	563
BspLI	GGNNCC	1 cut(s)	657
BspMAI	CTGCAG	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	637
BspT107I	GGYRCC	1 cut(s)	655
BspTI	CTTAAG	1 cut(s)	533
BspTNI	GGTCTC	2 cut(s)	499, 738
BsrDI	GCAATG	2 cut(s)	580, 704
BsrI	ACTGG	3 cut(s)	87, 559, 659
BssECI	CCNNGG	2 cut(s)	141, 280
BssMI	GATC	1 cut(s)	520
BssNI	GRCGYC	1 cut(s)	337
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	3 cut(s)	143, 674, 785
BstACI	GRCGYC	1 cut(s)	337
BstAFI	CTTAAG	1 cut(s)	533
BstDEI	CTNAG	4 cut(s)	7, 501, 710, 861
BstF5I	GGATG	3 cut(s)	643, 793, 824
BstHHI	GCGC	3 cut(s)	148, 550, 897
BstKTI	GATC	1 cut(s)	523
BstMAI	GTCTC	7 cut(s)	23, 121, 366, 499, 578, 738, 826
BstMBI	GATC	1 cut(s)	520
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 326
BstNI	CCWGG	3 cut(s)	143, 674, 785
BstNSI	RCATGY	1 cut(s)	847
BstSCI	CCNGG	3 cut(s)	141, 672, 783
BstSFI	CTRYAG	2 cut(s)	261, 324
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	160, 338
BsuRI	GGCC	4 cut(s)	79, 394, 440, 783
BtsCI	GGATG	3 cut(s)	643, 793, 824
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	179, 321
BveI	ACCTGC	1 cut(s)	637
CfoI	GCGC	3 cut(s)	148, 550, 897
Cfr13I	GGNCC	1 cut(s)	382
Csp6I	GTAC	2 cut(s)	460, 656
CspCI	CAANNNNNGTGG	2 cut(s)	621, 656
CviAII	CATG	3 cut(s)	26, 775, 844
CviQI	GTAC	2 cut(s)	460, 656
DdeI	CTNAG	4 cut(s)	7, 501, 710, 861
DpnI	GATC	1 cut(s)	522
DpnII	GATC	1 cut(s)	520
DrdI	GACNNNNNNGTC	1 cut(s)	380
DseDI	GACNNNNNNGTC	1 cut(s)	380
EaeI	YGGCCR	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	280
Eco147I	AGGCCT	1 cut(s)	79
Eco31I	GGTCTC	2 cut(s)	499, 738
Eco47I	GGWCC	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	342
EcoRII	CCWGG	3 cut(s)	141, 672, 783
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
Esp3I	CGTCTC	1 cut(s)	826
FaeI	CATG	3 cut(s)	29, 778, 847
FaiI	YATR	8 cut(s)	27, 60, 133, 175, 194, 443, 776, 845
FatI	CATG	3 cut(s)	25, 774, 843
Fnu4HI	GCNGC	3 cut(s)	63, 149, 327
FokI	GGATG	3 cut(s)	650, 800, 811
Fsp4HI	GCNGC	3 cut(s)	63, 149, 327
FspBI	CTAG	5 cut(s)	54, 162, 242, 390, 779
GlaI	GCGC	3 cut(s)	147, 549, 896
GluI	GCNGC	3 cut(s)	63, 149, 327
GsuI	CTGGAG	2 cut(s)	70, 500
HaeIII	GGCC	4 cut(s)	79, 394, 440, 783
HapII	CCGG	2 cut(s)	66, 564
HhaI	GCGC	3 cut(s)	148, 550, 897
Hin1I	GRCGYC	1 cut(s)	337
Hin1II	CATG	3 cut(s)	29, 778, 847
Hin6I	GCGC	3 cut(s)	146, 548, 895
HinP1I	GCGC	3 cut(s)	146, 548, 895
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HindIII	AAGCTT	2 cut(s)	597, 690
HinfI	GANTC	4 cut(s)	5, 285, 353, 484
HpaII	CCGG	2 cut(s)	66, 564
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	3 cut(s)	179, 360, 626
Hpy188I	TCNGA	3 cut(s)	95, 317, 862
Hpy188III	TCNNGA	7 cut(s)	118, 488, 500, 524, 564, 743, 839
Hpy8I	GTNNAC	3 cut(s)	179, 360, 626
HpyAV	CCTTC	7 cut(s)	54, 108, 115, 210, 362, 442, 826
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	6 cut(s)	179, 297, 326, 573, 632, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 326
HpyF3I	CTNAG	4 cut(s)	7, 501, 710, 861
HpySE526I	ACGT	1 cut(s)	337
Hsp92I	GRCGYC	1 cut(s)	337
Hsp92II	CATG	3 cut(s)	29, 778, 847
HspAI	GCGC	3 cut(s)	146, 548, 895
Kpn2I	TCCGGA	1 cut(s)	563
KpnI	GGTACC	1 cut(s)	659
Kzo9I	GATC	1 cut(s)	520
Lsp1109I	GCAGC	2 cut(s)	160, 338
LweI	GCATC	1 cut(s)	784
MaeI	CTAG	5 cut(s)	54, 162, 242, 390, 779
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	865
MalI	GATC	1 cut(s)	522
MboI	GATC	1 cut(s)	520
MboII	GAAGA	3 cut(s)	93, 530, 698
MhlI	GDGCHC	2 cut(s)	34, 181
MlsI	TGGCCA	1 cut(s)	440
MluCI	AATT	4 cut(s)	304, 409, 650, 703
MluNI	TGGCCA	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	294
MnlI	CCTC	5 cut(s)	351, 414, 571, 614, 856
Mox20I	TGGCCA	1 cut(s)	440
MroI	TCCGGA	1 cut(s)	563
MroXI	GAANNNNTTC	1 cut(s)	815
MscI	TGGCCA	1 cut(s)	440
MseI	TTAA	4 cut(s)	407, 534, 554, 594
MslI	CAYNNNNRTG	1 cut(s)	27
Msp20I	TGGCCA	1 cut(s)	440
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	2 cut(s)	66, 564
MspR9I	CCNGG	3 cut(s)	143, 674, 785
Mva1269I	GAATGC	1 cut(s)	39
MvaI	CCWGG	3 cut(s)	143, 674, 785
MwoI	GCNNNNNNNGC	2 cut(s)	71, 326
NdeII	GATC	1 cut(s)	520
NlaIII	CATG	3 cut(s)	29, 778, 847
NlaIV	GGNNCC	1 cut(s)	657
NspI	RCATGY	1 cut(s)	847
PaeR7I	CTCGAG	1 cut(s)	342
PceI	AGGCCT	1 cut(s)	79
PctI	GAATGC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	815
PfeI	GAWTC	2 cut(s)	353, 484
PfoI	TCCNGGA	1 cut(s)	672
PkrI	GCNGC	3 cut(s)	64, 150, 328
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
Psp6I	CCWGG	3 cut(s)	141, 672, 783
PspGI	CCWGG	3 cut(s)	141, 672, 783
PspN4I	GGNNCC	1 cut(s)	657
PspPI	GGNCC	1 cut(s)	382
PspXI	VCTCGAGB	1 cut(s)	342
PstI	CTGCAG	1 cut(s)	328
RsaI	GTAC	2 cut(s)	461, 657
RsaNI	GTAC	2 cut(s)	460, 656
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	4 cut(s)	407, 534, 554, 594
SatI	GCNGC	3 cut(s)	63, 149, 327
Sau3AI	GATC	1 cut(s)	520
Sau96I	GGNCC	1 cut(s)	382
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	3 cut(s)	143, 674, 785
SduI	GDGCHC	2 cut(s)	34, 181
SfaNI	GCATC	1 cut(s)	784
SfcI	CTRYAG	2 cut(s)	261, 324
Sfr274I	CTCGAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	382
SlaI	CTCGAG	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	2 cut(s)	342, 533
SmoI	CTYRAG	2 cut(s)	342, 533
SpeI	ACTAGT	1 cut(s)	161
Sse9I	AATT	4 cut(s)	304, 409, 650, 703
SseBI	AGGCCT	1 cut(s)	79
SsiI	CCGC	3 cut(s)	63, 136, 540
SspMI	CTAG	5 cut(s)	54, 162, 242, 390, 779
StuI	AGGCCT	1 cut(s)	79
StyD4I	CCNGG	3 cut(s)	141, 672, 783
StyI	CCWWGG	1 cut(s)	280
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	4 cut(s)	119, 343, 742, 874
TasI	AATT	4 cut(s)	304, 409, 650, 703
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	2 cut(s)	353, 484
Tru1I	TTAA	4 cut(s)	407, 534, 554, 594
Tru9I	TTAA	4 cut(s)	407, 534, 554, 594
TscAI	CASTG	2 cut(s)	186, 328
TseI	GCWGC	2 cut(s)	148, 326
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	2 cut(s)	186, 328
Vha464I	CTTAAG	1 cut(s)	533
VneI	GTGCAC	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	1 cut(s)	409
XceI	RCATGY	1 cut(s)	847
XhoI	CTCGAG	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	815
XspI	CTAG	5 cut(s)	54, 162, 242, 390, 779
ZraI	GACGTC	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.