Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003885

Physical Location & Seq

Genomic Coordinates Forward (+)

10765176 .. 10767212

Gene Structure 2037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032087

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGACTCTGCACTTCGTCTCCATCGTAGTGCTCTACACATTCCTTCCACCACTAGCCAAGCAGCAGGATTAGCAAGGCCTTATTCCAGTTTCAGACCTTCTTCTCTTTCACTTTTTTCAAAGGCTTCCACATACCGCACCCTATCGCAACACACCTTCAGTAGTCCTGTGATATGTGCACTAAACAAACCCTCGCCACCTTCGCCAAACTACGACAAAGACAATGGTAAAAAAATTGTGATAGTAGTGGGGGGTGCTTCTGTAGTTTTGGCTTGTGTCCTTGGAGTCATCAACAACAACTTCAATTTCAGTCCCACGGCCATGGCAGCCCGAAGGGATTTGCCCAAACATGAAGAAAGTGCAGTGGGACCAGTCGTGACTAGGCCGAGTGACGTGTTAGATTCATTGTTGAAAGTGAACAGACATATAGCCACATCCAAGAGTAGTACATGGAGCGTGTTCAGATCGACACCGCAGCTGTATGTTCCCCCGAGACCTAAAGATTATAATCCTGACAATCTTAAGATTGCAGTAGCGGAGTTAATCAAGTCCGGAAAGTGTGATGTGGCAGAGACGCAACTTAAAAGTTTATGCGAAACGGGGGGTGAAGTTGGAAATGATGTGGAGATGAATTTGGTACTAGTTCTCATTTTTCAGGGAAAATACAAAGAGGCTTTGGAACGTGGTTGTCTCAGTGGTGGTCCCATGGTTGAGTCGGATGGTCGAGTTCATTTTTACAAGGCTATTATATACACCATGCTGGGTCGGGATGATGAAGCCAAGACAGCCTGGAATAGATTTTTGGAATCCTATTCCAATCCACTATCGCAGCAAGACTACTCTGAGGTTGTGACCCCAAAGTTTCGAAGAGACACACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

32.21

Weight (kDa)

9.21

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34540 AT2G34540
fragaria_vesca	FvH4_3g05540 FvH4_3g05550
prunus_persica	Prupe.4G080600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014121 RchiOBHm_Chr5g0014151 RchiOBHm_Chr5g0014161
rosa_laevigata	RLG00000032083 RLG00000032086 RLG00000032087 RLG00000032173
rosa_multiflora	Rmu_sc0007767.1_g000023 Rmu_sc0027898.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062440 Rroxscaffold_1G00062450 Rroxscaffold_1G00062490
rosa_rugosa	Rorug05G0015800 Rorug05G0016100 Rorug05G0024500
rosa_samantha	Rh5AG109900 Rh5AG110000 Rh5BG106600 Rh5BG106800 Rh5BG107000 Rh5BG107100 Rh5BG116900 Rh5CG118500 Rh5CG119000 Rh5DG105300 Rh5DG105500 Rh5DG105600
rosa_wichuraiana	Rw5G009600 Rw5G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	507
AccIII	TCCGGA	1 cut(s)	551
AciI	CCGC	3 cut(s)	136, 473, 536
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	631
AcuI	CTGAAG	1 cut(s)	142
AfaI	GTAC	2 cut(s)	448, 639
AflII	CTTAAG	1 cut(s)	521
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	3 cut(s)	120, 304, 412
AhlI	ACTAGT	1 cut(s)	640
AjiI	CACGTC	1 cut(s)	394
AjnI	CCWGG	1 cut(s)	788
AjuI	GAANNNNNNNTTGG	2 cut(s)	785, 817
AluBI	AGCT	1 cut(s)	478
AluI	AGCT	1 cut(s)	478
Alw21I	GWGCWC	2 cut(s)	34, 181
Alw26I	GTCTC	5 cut(s)	23, 487, 566, 695, 864
Alw44I	GTGCAC	1 cut(s)	177
Ama87I	CYCGRG	1 cut(s)	490
Aor13HI	TCCGGA	1 cut(s)	551
AoxI	GGCC	3 cut(s)	77, 318, 383
ApaLI	GTGCAC	1 cut(s)	177
ApeKI	GCWGC	4 cut(s)	62, 326, 475, 829
ApoI	RAATTY	1 cut(s)	631
AspS9I	GGNCC	2 cut(s)	368, 701
AsuHPI	GGTGA	1 cut(s)	617
AsuII	TTCGAA	1 cut(s)	865
AvaI	CYCGRG	1 cut(s)	490
AvaII	GGWCC	2 cut(s)	368, 701
BaeGI	GKGCMC	1 cut(s)	181
Bbv12I	GWGCWC	2 cut(s)	34, 181
BbvI	GCAGC	4 cut(s)	74, 338, 487, 841
BccI	CCATC	2 cut(s)	30, 713
BceAI	ACGGC	1 cut(s)	333
BciT130I	CCWGG	1 cut(s)	790
BcoDI	GTCTC	5 cut(s)	23, 487, 566, 695, 864
BcuI	ACTAGT	1 cut(s)	640
BfaI	CTAG	3 cut(s)	54, 381, 641
BfmI	CTRYAG	1 cut(s)	261
BfrI	CTTAAG	1 cut(s)	521
BisI	GCNGC	4 cut(s)	63, 327, 476, 830
BlsI	GCNGC	4 cut(s)	64, 328, 477, 831
Bme1390I	CCNGG	1 cut(s)	790
Bme18I	GGWCC	2 cut(s)	368, 701
BmeT110I	CYCGRG	1 cut(s)	490
BmgBI	CACGTC	1 cut(s)	394
BmgT120I	GGNCC	2 cut(s)	368, 701
BmiI	GGNNCC	2 cut(s)	369, 703
BmrFI	CCNGG	1 cut(s)	790
Bpu14I	TTCGAA	1 cut(s)	865
BsaBI	GATNNNNATC	1 cut(s)	507
BsaI	GGTCTC	1 cut(s)	487
BsaJI	CCNNGG	4 cut(s)	280, 315, 321, 705
BsaWI	WCCGGW	1 cut(s)	551
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bse1I	ACTGG	2 cut(s)	87, 371
Bse8I	GATNNNNATC	1 cut(s)	507
BseAI	TCCGGA	1 cut(s)	551
BseBI	CCWGG	1 cut(s)	790
BseDI	CCNNGG	4 cut(s)	280, 315, 321, 705
BseGI	GGATG	3 cut(s)	434, 724, 775
BseJI	GATNNNNATC	1 cut(s)	507
BseMII	CTCAG	2 cut(s)	706, 834
BseNI	ACTGG	2 cut(s)	87, 371
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	4 cut(s)	74, 338, 487, 841
BseYI	CCCAGC	1 cut(s)	760
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	3 cut(s)	79, 320, 385
BsiHKAI	GWGCWC	2 cut(s)	34, 181
BsiHKCI	CYCGRG	1 cut(s)	490
BsiSI	CCGG	1 cut(s)	552
BslFI	GGGAC	3 cut(s)	297, 381, 687
BsmAI	GTCTC	5 cut(s)	23, 487, 566, 695, 864
BsmBI	CGTCTC	2 cut(s)	23, 566
BsmFI	GGGAC	3 cut(s)	297, 381, 687
BsnI	GGCC	3 cut(s)	79, 320, 385
Bso31I	GGTCTC	1 cut(s)	487
BsoBI	CYCGRG	1 cut(s)	490
Bsp119I	TTCGAA	1 cut(s)	865
Bsp1286I	GDGCHC	2 cut(s)	34, 181
Bsp13I	TCCGGA	1 cut(s)	551
Bsp143I	GATC	1 cut(s)	464
Bsp19I	CCATGG	2 cut(s)	321, 705
BspACI	CCGC	3 cut(s)	136, 473, 536
BspANI	GGCC	3 cut(s)	79, 320, 385
BspCNI	CTCAG	2 cut(s)	705, 835
BspEI	TCCGGA	1 cut(s)	551
BspLI	GGNNCC	2 cut(s)	369, 703
BspT104I	TTCGAA	1 cut(s)	865
BspTI	CTTAAG	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	87, 371
BssECI	CCNNGG	4 cut(s)	280, 315, 321, 705
BssMI	GATC	1 cut(s)	464
BssT1I	CCWWGG	3 cut(s)	280, 321, 705
Bst2UI	CCWGG	1 cut(s)	790
Bst6I	CTCTTC	1 cut(s)	862
BstAFI	CTTAAG	1 cut(s)	521
BstBI	TTCGAA	1 cut(s)	865
BstDEI	CTNAG	2 cut(s)	692, 843
BstDSI	CCRYGG	3 cut(s)	315, 321, 705
BstF5I	GGATG	3 cut(s)	434, 724, 775
BstKTI	GATC	1 cut(s)	467
BstMAI	GTCTC	5 cut(s)	23, 487, 566, 695, 864
BstMBI	GATC	1 cut(s)	464
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 202, 326, 785
BstNI	CCWGG	1 cut(s)	790
BstSCI	CCNGG	1 cut(s)	788
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	4 cut(s)	74, 338, 487, 841
BstXI	CCANNNNNNTGG	1 cut(s)	322
BsuRI	GGCC	3 cut(s)	79, 320, 385
BtgI	CCRYGG	3 cut(s)	315, 321, 705
BtrI	CACGTC	1 cut(s)	394
BtsCI	GGATG	3 cut(s)	434, 724, 775
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	369, 700
Cfr13I	GGNCC	2 cut(s)	368, 701
CseI	GACGC	1 cut(s)	583
Csp6I	GTAC	2 cut(s)	447, 638
CviAII	CATG	5 cut(s)	322, 350, 450, 706, 757
CviQI	GTAC	2 cut(s)	447, 638
DdeI	CTNAG	2 cut(s)	692, 843
DpnI	GATC	1 cut(s)	466
DpnII	GATC	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	862
EarI	CTCTTC	1 cut(s)	862
Eco130I	CCWWGG	3 cut(s)	280, 321, 705
Eco147I	AGGCCT	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	487
Eco47I	GGWCC	2 cut(s)	368, 701
Eco57I	CTGAAG	1 cut(s)	142
Eco88I	CYCGRG	1 cut(s)	490
EcoRII	CCWGG	1 cut(s)	788
EcoT14I	CCWWGG	3 cut(s)	280, 321, 705
ErhI	CCWWGG	3 cut(s)	280, 321, 705
Esp3I	CGTCTC	2 cut(s)	23, 566
FaeI	CATG	5 cut(s)	325, 353, 453, 709, 760
FaqI	GGGAC	3 cut(s)	297, 381, 687
FatI	CATG	5 cut(s)	321, 349, 449, 705, 756
Fnu4HI	GCNGC	4 cut(s)	63, 327, 476, 830
FokI	GGATG	3 cut(s)	421, 731, 782
Fsp4HI	GCNGC	4 cut(s)	63, 327, 476, 830
FspBI	CTAG	3 cut(s)	54, 381, 641
GluI	GCNGC	4 cut(s)	63, 327, 476, 830
GsaI	CCCAGC	1 cut(s)	764
HaeIII	GGCC	3 cut(s)	79, 320, 385
HapII	CCGG	1 cut(s)	552
HgaI	GACGC	1 cut(s)	583
Hin1II	CATG	5 cut(s)	325, 353, 453, 709, 760
HinfI	GANTC	5 cut(s)	5, 285, 401, 713, 806
HpaII	CCGG	1 cut(s)	552
HphI	GGTGA	1 cut(s)	617
Hpy166II	GTNNAC	2 cut(s)	179, 418
Hpy188I	TCNGA	4 cut(s)	95, 464, 718, 844
Hpy188III	TCNNGA	4 cut(s)	376, 512, 552, 767
Hpy8I	GTNNAC	2 cut(s)	179, 418
HpyAV	CCTTC	5 cut(s)	54, 108, 166, 210, 327
HpyCH4IV	ACGT	2 cut(s)	393, 682
HpyCH4V	TGCA	4 cut(s)	11, 179, 362, 530
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 202, 326, 785
HpyF3I	CTNAG	2 cut(s)	692, 843
HpySE526I	ACGT	2 cut(s)	393, 682
Hsp92II	CATG	5 cut(s)	325, 353, 453, 709, 760
Kpn2I	TCCGGA	1 cut(s)	551
Kzo9I	GATC	1 cut(s)	464
LmnI	GCTCC	1 cut(s)	453
Lsp1109I	GCAGC	4 cut(s)	74, 338, 487, 841
MaeI	CTAG	3 cut(s)	54, 381, 641
MaeII	ACGT	2 cut(s)	393, 682
MaeIII	GTNAC	3 cut(s)	376, 389, 850
MalI	GATC	1 cut(s)	466
MboI	GATC	1 cut(s)	464
MboII	GAAGA	3 cut(s)	93, 365, 879
MhlI	GDGCHC	2 cut(s)	34, 181
MluCI	AATT	3 cut(s)	234, 304, 631
MlyI	GAGTC	2 cut(s)	294, 722
MmeI	TCCRAC	2 cut(s)	592, 696
MnlI	CCTC	3 cut(s)	202, 664, 838
MroI	TCCGGA	1 cut(s)	551
MseI	TTAA	3 cut(s)	522, 542, 582
MslI	CAYNNNNRTG	2 cut(s)	27, 320
MspA1I	CMGCKG	1 cut(s)	478
MspCI	CTTAAG	1 cut(s)	521
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	1 cut(s)	790
MvaI	CCWGG	1 cut(s)	790
MwoI	GCNNNNNNNGC	4 cut(s)	71, 202, 326, 785
NcoI	CCATGG	2 cut(s)	321, 705
NdeII	GATC	1 cut(s)	464
NlaIII	CATG	5 cut(s)	325, 353, 453, 709, 760
NlaIV	GGNNCC	2 cut(s)	369, 703
NmeAIII	GCCGAG	1 cut(s)	411
NmuCI	GTSAC	3 cut(s)	376, 389, 850
NspV	TTCGAA	1 cut(s)	865
PceI	AGGCCT	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	401, 806
PkrI	GCNGC	4 cut(s)	64, 328, 477, 831
PleI	GAGTC	2 cut(s)	293, 721
PpsI	GAGTC	2 cut(s)	293, 721
PsiI	TTATAA	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	788
PspFI	CCCAGC	1 cut(s)	760
PspGI	CCWGG	1 cut(s)	788
PspN4I	GGNNCC	2 cut(s)	369, 703
PspPI	GGNCC	2 cut(s)	368, 701
PvuII	CAGCTG	1 cut(s)	478
RsaI	GTAC	2 cut(s)	448, 639
RsaNI	GTAC	2 cut(s)	447, 638
RseI	CAYNNNNRTG	2 cut(s)	27, 320
SaqAI	TTAA	3 cut(s)	522, 542, 582
SatI	GCNGC	4 cut(s)	63, 327, 476, 830
Sau3AI	GATC	1 cut(s)	464
Sau96I	GGNCC	2 cut(s)	368, 701
SchI	GAGTC	2 cut(s)	294, 722
ScrFI	CCNGG	1 cut(s)	790
SduI	GDGCHC	2 cut(s)	34, 181
SetI	ASST	8 cut(s)	100, 158, 202, 396, 480, 499, 685, 849
SfcI	CTRYAG	1 cut(s)	261
SfuI	TTCGAA	1 cut(s)	865
SinI	GGWCC	2 cut(s)	368, 701
SmiMI	CAYNNNNRTG	2 cut(s)	27, 320
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SpeI	ACTAGT	1 cut(s)	640
Sse9I	AATT	3 cut(s)	234, 304, 631
SseBI	AGGCCT	1 cut(s)	79
SsiI	CCGC	3 cut(s)	136, 473, 536
SspMI	CTAG	3 cut(s)	54, 381, 641
StuI	AGGCCT	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	788
StyI	CCWWGG	3 cut(s)	280, 321, 705
TaiI	ACGT	2 cut(s)	396, 685
TaqI	TCGA	3 cut(s)	467, 724, 865
TasI	AATT	3 cut(s)	234, 304, 631
TatI	WGTACW	1 cut(s)	446
TfiI	GAWTC	2 cut(s)	401, 806
Tru1I	TTAA	3 cut(s)	522, 542, 582
Tru9I	TTAA	3 cut(s)	522, 542, 582
TscAI	CASTG	2 cut(s)	369, 700
TseFI	GTSAC	3 cut(s)	376, 389, 850
TseI	GCWGC	4 cut(s)	62, 326, 475, 829
Tsp45I	GTSAC	3 cut(s)	376, 389, 850
TspDTI	ATGAA	5 cut(s)	366, 393, 644, 719, 789
TspRI	CASTG	2 cut(s)	369, 700
Vha464I	CTTAAG	1 cut(s)	521
VneI	GTGCAC	1 cut(s)	177
VpaK11BI	GGWCC	2 cut(s)	368, 701
XapI	RAATTY	1 cut(s)	631
XspI	CTAG	3 cut(s)	54, 381, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.