Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003885

Physical Location & Seq

Genomic Coordinates Reverse (-)

84591961 .. 84604899

Gene Structure 12939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00062490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCTAGGCCGAAAGCCGCGTTAGATTCATTGTTGACGGTGAACAAGCATTTAGCCACATCAAAGAGTACATGGAGCGTGTTCAAATCGAAACCGCAGTTGTATATTCCCGAGACACCTACAAAGGAAGACTATGACAATCTTAAGATTGCAGTAGCGGATTTAATAAAGTCCGGAAAGTGCGATGTGGCAAAGAGTCAACTTATTAATTTATACAAAGAAACCATAGAGAAAAAATGGCTTATTCCTGCAAATGAAGTGGAGATGGAATTGGGACTAGTTCTCATTTTCCAGGGAAATTACGAAGAAGCTTTGAAATGTAAATGTCTCGGTGATGATGCCAAGGTTGATTCGGATGGTCGAGTTTCATTTTACAAGGCTATTATCTACACCATGCTCGATCGGGATGGGGAACCTCGCATACGGAAGGAAGCCGAGAAGTACTGGAAACTCTTTATCGAGTCCTTTCCAACTTCCAAGTCAACCACGGTCGTAAGACCACGAGGTTCCGCATCCATTTCGAGAGAAGAGAGAAACGCTGATACCTTATATTTATTGGGTGATTGGTACACTCAAAGAGCAATGTTTTCCTCTACAGCTAACCCAAACTTCCATATGTTTCCATCCCATATAAAATTGATCGCATGCAGTTTCTTTCCTCTGAATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

25.43

Weight (kDa)

8.74

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34540 AT2G34540
fragaria_vesca	FvH4_3g05540 FvH4_3g05550
prunus_persica	Prupe.4G080600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014121 RchiOBHm_Chr5g0014151 RchiOBHm_Chr5g0014161
rosa_laevigata	RLG00000032083 RLG00000032086 RLG00000032087 RLG00000032173
rosa_multiflora	Rmu_sc0007767.1_g000023 Rmu_sc0027898.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062440 Rroxscaffold_1G00062450 Rroxscaffold_1G00062490
rosa_rugosa	Rorug05G0015800 Rorug05G0016100 Rorug05G0024500
rosa_samantha	Rh5AG109900 Rh5AG110000 Rh5BG106600 Rh5BG106800 Rh5BG107000 Rh5BG107100 Rh5BG116900 Rh5CG118500 Rh5CG119000 Rh5DG105300 Rh5DG105500 Rh5DG105600
rosa_wichuraiana	Rw5G009600 Rw5G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	20
AccIII	TCCGGA	1 cut(s)	173
AciI	CCGC	4 cut(s)	18, 95, 158, 510
AfaI	GTAC	3 cut(s)	70, 443, 569
AflII	CTTAAG	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	85, 316
AhlI	ACTAGT	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	2 cut(s)	311, 599
AluI	AGCT	2 cut(s)	311, 599
Alw26I	GTCTC	2 cut(s)	107, 332
Ama87I	CYCGRG	1 cut(s)	110
Aor13HI	TCCGGA	1 cut(s)	173
AoxI	GGCC	1 cut(s)	8
AseI	ATTAAT	1 cut(s)	207
AsuHPI	GGTGA	3 cut(s)	52, 344, 572
AvaI	CYCGRG	1 cut(s)	110
BauI	CACGAG	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	135
BccI	CCATC	4 cut(s)	259, 350, 401, 631
BcgI	CGANNNNNNTGC	2 cut(s)	501, 535
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	2 cut(s)	107, 332
BcuI	ACTAGT	1 cut(s)	277
BfaI	CTAG	2 cut(s)	6, 278
BfmI	CTRYAG	1 cut(s)	594
BfrI	CTTAAG	1 cut(s)	143
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
BmcAI	AGTACT	1 cut(s)	443
Bme1390I	CCNGG	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	110
BmiI	GGNNCC	2 cut(s)	414, 508
BmrFI	CCNGG	1 cut(s)	293
BmsI	GCATC	2 cut(s)	328, 521
BpiI	GAAGAC	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	292, 342, 486
BsaWI	WCCGGW	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	449
Bse3DI	GCAATG	1 cut(s)	588
BseAI	TCCGGA	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	3 cut(s)	292, 342, 486
BseGI	GGATG	4 cut(s)	361, 412, 512, 623
BseMI	GCAATG	1 cut(s)	588
BseNI	ACTGG	1 cut(s)	449
Bsh1236I	CGCG	1 cut(s)	20
Bsh1285I	CGRYCG	2 cut(s)	403, 492
BshFI	GGCC	1 cut(s)	10
BsiEI	CGRYCG	2 cut(s)	403, 492
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	288
BsmAI	GTCTC	2 cut(s)	107, 332
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	110
Bsp13I	TCCGGA	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	400, 639
BspACI	CCGC	4 cut(s)	18, 95, 158, 510
BspANI	GGCC	1 cut(s)	10
BspEI	TCCGGA	1 cut(s)	173
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	414, 508
BspTI	CTTAAG	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	588
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	3 cut(s)	292, 342, 486
BssMI	GATC	2 cut(s)	400, 639
BssSI	CACGAG	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	40, 490
Bst6I	CTCTTC	1 cut(s)	522
BstAFI	CTTAAG	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	646
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	4 cut(s)	361, 412, 512, 623
BstFNI	CGCG	1 cut(s)	20
BstKTI	GATC	2 cut(s)	403, 642
BstMAI	GTCTC	2 cut(s)	107, 332
BstMBI	GATC	2 cut(s)	400, 639
BstMCI	CGRYCG	2 cut(s)	403, 492
BstNI	CCWGG	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	648
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	594
BstUI	CGCG	1 cut(s)	20
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	10
BtgI	CCRYGG	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	4 cut(s)	361, 412, 512, 623
Cac8I	GCNNGC	1 cut(s)	646
Csp6I	GTAC	3 cut(s)	69, 442, 568
CspCI	CAANNNNNGTGG	2 cut(s)	240, 275
CviAII	CATG	3 cut(s)	72, 394, 645
CviJI	RGCY	8 cut(s)	10, 17, 56, 241, 311, 380, 434, 599
CviKI_1	RGCY	8 cut(s)	10, 17, 56, 241, 311, 380, 434, 599
CviQI	GTAC	3 cut(s)	69, 442, 568
DpnI	GATC	2 cut(s)	402, 641
DpnII	GATC	2 cut(s)	400, 639
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
Eco130I	CCWWGG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	3 cut(s)	75, 397, 648
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	3 cut(s)	71, 393, 644
FauNDI	CATATG	1 cut(s)	615
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	4 cut(s)	368, 419, 499, 610
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	2 cut(s)	6, 278
GluI	GCNGC	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	1 cut(s)	174
Hin1II	CATG	3 cut(s)	75, 397, 648
HincII	GTYRAC	3 cut(s)	36, 200, 483
HindII	GTYRAC	3 cut(s)	36, 200, 483
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	4 cut(s)	26, 196, 350, 461
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	3 cut(s)	52, 344, 572
Hpy166II	GTNNAC	5 cut(s)	36, 43, 200, 483, 570
Hpy188I	TCNGA	2 cut(s)	355, 663
Hpy188III	TCNNGA	4 cut(s)	110, 174, 404, 522
Hpy8I	GTNNAC	5 cut(s)	36, 43, 200, 483, 570
HpyAV	CCTTC	1 cut(s)	421
HpyCH4III	ACNGT	2 cut(s)	40, 490
HpyCH4V	TGCA	3 cut(s)	152, 251, 648
Hsp92II	CATG	3 cut(s)	75, 397, 648
Kpn2I	TCCGGA	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	400, 639
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	5 cut(s)	187, 261, 278, 305, 430
LweI	GCATC	2 cut(s)	328, 521
MaeI	CTAG	2 cut(s)	6, 278
MalI	GATC	2 cut(s)	402, 641
MboI	GATC	2 cut(s)	400, 639
MboII	GAAGA	3 cut(s)	140, 317, 539
MluCI	AATT	5 cut(s)	208, 269, 298, 635, 667
MlyI	GAGTC	2 cut(s)	205, 470
MmeI	TCCRAC	1 cut(s)	494
MnlI	CCTC	4 cut(s)	426, 497, 601, 669
MroI	TCCGGA	1 cut(s)	173
MseI	TTAA	3 cut(s)	144, 164, 207
MspCI	CTTAAG	1 cut(s)	143
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	293
MvnI	CGCG	1 cut(s)	20
NdeI	CATATG	1 cut(s)	615
NdeII	GATC	2 cut(s)	400, 639
NlaIII	CATG	3 cut(s)	75, 397, 648
NlaIV	GGNNCC	2 cut(s)	414, 508
NmeAIII	GCCGAG	1 cut(s)	460
NspI	RCATGY	1 cut(s)	648
PaeI	GCATGC	1 cut(s)	648
PfeI	GAWTC	2 cut(s)	26, 350
PkrI	GCNGC	1 cut(s)	19
Ple19I	CGATCG	1 cut(s)	403
PleI	GAGTC	2 cut(s)	204, 469
PpsI	GAGTC	2 cut(s)	204, 469
PshBI	ATTAAT	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	414, 508
PsrI	GAACNNNNNNTAC	2 cut(s)	405, 437
PvuI	CGATCG	1 cut(s)	403
RsaI	GTAC	3 cut(s)	70, 443, 569
RsaNI	GTAC	3 cut(s)	69, 442, 568
SaqAI	TTAA	3 cut(s)	144, 164, 207
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	2 cut(s)	400, 639
ScaI	AGTACT	1 cut(s)	443
SchI	GAGTC	2 cut(s)	205, 470
ScrFI	CCNGG	1 cut(s)	293
SetI	ASST	7 cut(s)	121, 313, 348, 418, 508, 548, 601
SfaNI	GCATC	2 cut(s)	328, 521
SfcI	CTRYAG	1 cut(s)	594
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SpeI	ACTAGT	1 cut(s)	277
SphI	GCATGC	1 cut(s)	648
Sse9I	AATT	5 cut(s)	208, 269, 298, 635, 667
SsiI	CCGC	4 cut(s)	18, 95, 158, 510
SspMI	CTAG	2 cut(s)	6, 278
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	40, 490
TaqI	TCGA	5 cut(s)	89, 361, 399, 459, 521
TasI	AATT	5 cut(s)	208, 269, 298, 635, 667
TatI	WGTACW	2 cut(s)	68, 441
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	26, 350
Tru1I	TTAA	3 cut(s)	144, 164, 207
Tru9I	TTAA	3 cut(s)	144, 164, 207
TspDTI	ATGAA	3 cut(s)	18, 270, 357
TspGWI	ACGGA	1 cut(s)	439
Vha464I	CTTAAG	1 cut(s)	143
VspI	ATTAAT	1 cut(s)	207
XceI	RCATGY	1 cut(s)	648
XspI	CTAG	2 cut(s)	6, 278
ZrmI	AGTACT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.