Rh5DG105600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003885
Physical Location & Seq
Forward (+)
9582368 .. 9584083
1716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG105600.1

Sequence Viewer

Length: 876 bp
ATGGACTCTGCACTTCGTCTCCATCGTAGTGCTCTACGCATTCCTTCCACCACTAGCCGTGCAGCCGGATTAGCAAGGCCTTATTCCAGTTTCAGACCTTCTTCTCTTTCACTTTTTTCAAAGGCTTCCACATACCGCACCCTATCGCGAGACACCTTCAGTAGTCCTGTGATATGTGCACTAAACAAACCCTCGCCACCTTCGCCAAACTACGACAAAGACAATGGTAAAAAAATTGTGATAGTGGTGGGGGGTGCTGCTGTAGTTTTGGCTTGTGTCCTTGGAGTCATCAACAACAACTTCAATTTCAGTCCCAAAGCCATGGCAGGCCCCCGAAGGGATTCGCCCAAACATGAAGAAAGTGCAGTGGGACCAGTAGTGAATAGGCCGAGTGAAGTGTTGGATTCATTGTTGAAGATGAACAGACATATAGCCACACCCAAGAGTACGTGGAGAATCCGGACACCGAAGCTGTATGTTCCCCCGGAACCTAAAGATTATAATCCTGACAATCTTAAGATTACAGTAGCGGAGTTAATCAAGTCCGGGAAGTGCGATGTGGCAGAGACGCAACTTAAAAGTTTATGCGGAACGGGGGGTGAAGTTGGAAACGATGTGGAGATGAATTTGGTACTAGTTCTCATTTTCCAGGGAAAATACCAAGAGGCTTTGAATCGTGGTTGTCTCAGTGGTGGGCGCGTGGTTGAGTCGGATGGTCGAGTTCATTTTTACAAGGCTATTATATGCACCATGCTGGGTCGGGATAGTGAAGCCAAGACATCCTGGAATAGATTTTTGGAATCCTATTCTAACCCACCATCGCCGCAAGACTACTCTGAGGTTGCGACCCAAAAGTCTCGAAGAGACGCACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

31.9

Weight (kDa)

9.61

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
AasI GACNNNNNNGTC 1 cut(s) 853
AccII CGCG 2 cut(s) 148, 699
AccIII TCCGGA 1 cut(s) 459
AciI CCGC 4 cut(s) 136, 530, 588, 824
AcsI RAATTY 1 cut(s) 625
AcuI CTGAAG 1 cut(s) 142
AfaI GTAC 2 cut(s) 448, 633
AfiI CCNNNNNNNGG 1 cut(s) 337
AflII CTTAAG 1 cut(s) 515
AgsI TTSAA 4 cut(s) 120, 304, 415, 673
AhlI ACTAGT 1 cut(s) 634
AjnI CCWGG 2 cut(s) 648, 782
AjuI GAANNNNNNNTTGG 2 cut(s) 779, 811
AluBI AGCT 1 cut(s) 472
AluI AGCT 1 cut(s) 472
Alw21I GWGCWC 2 cut(s) 34, 181
Alw26I GTCTC 6 cut(s) 23, 144, 560, 689, 858, 861
Alw44I GTGCAC 1 cut(s) 177
Aor13HI TCCGGA 1 cut(s) 459
AoxI GGCC 3 cut(s) 77, 328, 386
ApaLI GTGCAC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 62, 257
ApoI RAATTY 1 cut(s) 625
Asp700I GAANNNNTTC 1 cut(s) 340
AspLEI GCGC 1 cut(s) 699
AspS9I GGNCC 2 cut(s) 329, 371
AsuC2I CCSGG 2 cut(s) 485, 547
AsuHPI GGTGA 1 cut(s) 611
AvaII GGWCC 1 cut(s) 371
BaeGI GKGCMC 1 cut(s) 181
Bbv12I GWGCWC 2 cut(s) 34, 181
BbvI GCAGC 2 cut(s) 74, 244
BccI CCATC 3 cut(s) 30, 707, 826
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 2 cut(s) 650, 784
BcnI CCSGG 2 cut(s) 485, 547
BcoDI GTCTC 6 cut(s) 23, 144, 560, 689, 858, 861
BcuI ACTAGT 1 cut(s) 634
BfaI CTAG 2 cut(s) 54, 635
BfmI CTRYAG 1 cut(s) 261
BfrI CTTAAG 1 cut(s) 515
BisI GCNGC 3 cut(s) 63, 258, 824
BlsI GCNGC 3 cut(s) 64, 259, 825
Bme1390I CCNGG 4 cut(s) 485, 547, 650, 784
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 2 cut(s) 329, 371
BmiI GGNNCC 3 cut(s) 331, 372, 489
BmrFI CCNGG 4 cut(s) 485, 547, 650, 784
BpuMI CCSGG 2 cut(s) 485, 547
BsaAI YACGTR 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 501
BsaJI CCNNGG 4 cut(s) 280, 321, 483, 649
BsaWI WCCGGW 1 cut(s) 459
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse1I ACTGG 2 cut(s) 87, 374
Bse8I GATNNNNATC 1 cut(s) 501
BseAI TCCGGA 1 cut(s) 459
BseBI CCWGG 2 cut(s) 650, 784
BseDI CCNNGG 4 cut(s) 280, 321, 483, 649
BseGI GGATG 2 cut(s) 718, 779
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 700, 828
BseNI ACTGG 2 cut(s) 87, 374
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 2 cut(s) 74, 244
BseYI CCCAGC 1 cut(s) 754
BsgI GTGCAG 2 cut(s) 81, 384
Bsh1236I CGCG 2 cut(s) 148, 699
BshFI GGCC 3 cut(s) 79, 330, 388
BsiHKAI GWGCWC 2 cut(s) 34, 181
BsiSI CCGG 4 cut(s) 66, 460, 485, 546
BslFI GGGAC 2 cut(s) 297, 384
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 6 cut(s) 23, 144, 560, 689, 858, 861
BsmBI CGTCTC 3 cut(s) 23, 560, 858
BsmFI GGGAC 2 cut(s) 297, 384
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 3 cut(s) 79, 330, 388
Bsp1286I GDGCHC 2 cut(s) 34, 181
Bsp13I TCCGGA 1 cut(s) 459
Bsp19I CCATGG 1 cut(s) 321
Bsp68I TCGCGA 1 cut(s) 148
BspACI CCGC 4 cut(s) 136, 530, 588, 824
BspANI GGCC 3 cut(s) 79, 330, 388
BspCNI CTCAG 2 cut(s) 699, 829
BspEI TCCGGA 1 cut(s) 459
BspFNI CGCG 2 cut(s) 148, 699
BspLI GGNNCC 3 cut(s) 331, 372, 489
BspTI CTTAAG 1 cut(s) 515
BsrI ACTGG 2 cut(s) 87, 374
BssECI CCNNGG 4 cut(s) 280, 321, 483, 649
BssT1I CCWWGG 2 cut(s) 280, 321
Bst2UI CCWGG 2 cut(s) 650, 784
Bst4CI ACNGT 1 cut(s) 526
Bst6I CTCTTC 1 cut(s) 856
BstAFI CTTAAG 1 cut(s) 515
BstBAI YACGTR 1 cut(s) 450
BstC8I GCNNGC 2 cut(s) 328, 871
BstDEI CTNAG 2 cut(s) 686, 837
BstDSI CCRYGG 1 cut(s) 321
BstF5I GGATG 2 cut(s) 718, 779
BstFNI CGCG 2 cut(s) 148, 699
BstHHI GCGC 1 cut(s) 699
BstMAI GTCTC 6 cut(s) 23, 144, 560, 689, 858, 861
BstMWI GCNNNNNNNGC 2 cut(s) 71, 202
BstNI CCWGG 2 cut(s) 650, 784
BstSCI CCNGG 4 cut(s) 483, 545, 648, 782
BstSFI CTRYAG 1 cut(s) 261
BstSLI GKGCMC 1 cut(s) 181
BstUI CGCG 2 cut(s) 148, 699
BstV1I GCAGC 2 cut(s) 74, 244
BstXI CCANNNNNNTGG 1 cut(s) 322
BsuRI GGCC 3 cut(s) 79, 330, 388
BtgI CCRYGG 1 cut(s) 321
BtgZI GCGATG 2 cut(s) 570, 804
BtsCI GGATG 2 cut(s) 718, 779
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 2 cut(s) 372, 694
BtuMI TCGCGA 1 cut(s) 148
Cac8I GCNNGC 2 cut(s) 328, 871
CfoI GCGC 1 cut(s) 699
Cfr13I GGNCC 2 cut(s) 329, 371
CseI GACGC 1 cut(s) 577
Csp6I GTAC 2 cut(s) 447, 632
CviAII CATG 3 cut(s) 322, 353, 751
CviQI GTAC 2 cut(s) 447, 632
DdeI CTNAG 2 cut(s) 686, 837
DrdI GACNNNNNNGTC 1 cut(s) 853
DseDI GACNNNNNNGTC 1 cut(s) 853
Eam1104I CTCTTC 1 cut(s) 856
EarI CTCTTC 1 cut(s) 856
Eco130I CCWWGG 2 cut(s) 280, 321
Eco147I AGGCCT 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 329
EcoRII CCWGG 2 cut(s) 648, 782
EcoT14I CCWWGG 2 cut(s) 280, 321
ErhI CCWWGG 2 cut(s) 280, 321
Esp3I CGTCTC 3 cut(s) 23, 560, 858
FaeI CATG 3 cut(s) 325, 356, 754
FaqI GGGAC 2 cut(s) 297, 384
FatI CATG 3 cut(s) 321, 352, 750
Fnu4HI GCNGC 3 cut(s) 63, 258, 824
FokI GGATG 2 cut(s) 725, 766
Fsp4HI GCNGC 3 cut(s) 63, 258, 824
FspBI CTAG 2 cut(s) 54, 635
GlaI GCGC 1 cut(s) 698
GluI GCNGC 3 cut(s) 63, 258, 824
GsaI CCCAGC 1 cut(s) 758
HaeIII GGCC 3 cut(s) 79, 330, 388
HapII CCGG 4 cut(s) 66, 460, 485, 546
HgaI GACGC 1 cut(s) 577
HhaI GCGC 1 cut(s) 699
Hin1II CATG 3 cut(s) 325, 356, 754
Hin6I GCGC 1 cut(s) 697
HinP1I GCGC 1 cut(s) 697
HinfI GANTC 8 cut(s) 5, 285, 341, 404, 456, 673, 707, 800
HpaII CCGG 4 cut(s) 66, 460, 485, 546
HphI GGTGA 1 cut(s) 611
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 3 cut(s) 95, 712, 838
Hpy188III TCNNGA 5 cut(s) 147, 460, 506, 761, 858
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 5 cut(s) 54, 108, 166, 210, 330
HpyCH4III ACNGT 1 cut(s) 526
HpyCH4IV ACGT 1 cut(s) 449
HpyCH4V TGCA 5 cut(s) 11, 62, 179, 365, 747
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 202
HpyF3I CTNAG 2 cut(s) 686, 837
HpySE526I ACGT 1 cut(s) 449
Hsp92II CATG 3 cut(s) 325, 356, 754
HspAI GCGC 1 cut(s) 697
Kpn2I TCCGGA 1 cut(s) 459
Lsp1109I GCAGC 2 cut(s) 74, 244
MaeI CTAG 2 cut(s) 54, 635
MaeII ACGT 1 cut(s) 449
MboII GAAGA 4 cut(s) 93, 368, 427, 873
MhlI GDGCHC 2 cut(s) 34, 181
MluCI AATT 3 cut(s) 234, 304, 625
MlyI GAGTC 2 cut(s) 294, 716
MmeI TCCRAC 3 cut(s) 381, 586, 690
MnlI CCTC 3 cut(s) 202, 658, 832
MroI TCCGGA 1 cut(s) 459
MroXI GAANNNNTTC 1 cut(s) 340
MseI TTAA 3 cut(s) 516, 536, 576
MslI CAYNNNNRTG 1 cut(s) 27
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 4 cut(s) 66, 460, 485, 546
MspR9I CCNGG 4 cut(s) 485, 547, 650, 784
Mva1269I GAATGC 1 cut(s) 39
MvaI CCWGG 2 cut(s) 650, 784
MvnI CGCG 2 cut(s) 148, 699
MwoI GCNNNNNNNGC 2 cut(s) 71, 202
NciI CCSGG 2 cut(s) 485, 547
NcoI CCATGG 1 cut(s) 321
NlaIII CATG 3 cut(s) 325, 356, 754
NlaIV GGNNCC 3 cut(s) 331, 372, 489
NmeAIII GCCGAG 1 cut(s) 414
NruI TCGCGA 1 cut(s) 148
PceI AGGCCT 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PctI GAATGC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 340
PfeI GAWTC 5 cut(s) 341, 404, 456, 673, 800
PfoI TCCNGGA 2 cut(s) 545, 782
PkrI GCNGC 3 cut(s) 64, 259, 825
PleI GAGTC 2 cut(s) 293, 715
PpsI GAGTC 2 cut(s) 293, 715
Ppu21I YACGTR 1 cut(s) 450
PsiI TTATAA 1 cut(s) 501
Psp6I CCWGG 2 cut(s) 648, 782
PspFI CCCAGC 1 cut(s) 754
PspGI CCWGG 2 cut(s) 648, 782
PspN4I GGNNCC 3 cut(s) 331, 372, 489
PspPI GGNCC 2 cut(s) 329, 371
RruI TCGCGA 1 cut(s) 148
RsaI GTAC 2 cut(s) 448, 633
RsaNI GTAC 2 cut(s) 447, 632
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 3 cut(s) 516, 536, 576
SatI GCNGC 3 cut(s) 63, 258, 824
Sau96I GGNCC 2 cut(s) 329, 371
SchI GAGTC 2 cut(s) 294, 716
ScrFI CCNGG 4 cut(s) 485, 547, 650, 784
SduI GDGCHC 2 cut(s) 34, 181
SetI ASST 7 cut(s) 100, 158, 202, 452, 474, 493, 843
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
SpeI ACTAGT 1 cut(s) 634
Sse9I AATT 3 cut(s) 234, 304, 625
SseBI AGGCCT 1 cut(s) 79
SsiI CCGC 4 cut(s) 136, 530, 588, 824
SspMI CTAG 2 cut(s) 54, 635
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 4 cut(s) 483, 545, 648, 782
StyI CCWWGG 2 cut(s) 280, 321
TaaI ACNGT 1 cut(s) 526
TaiI ACGT 1 cut(s) 452
TaqI TCGA 2 cut(s) 718, 859
TasI AATT 3 cut(s) 234, 304, 625
TauI GCSGC 1 cut(s) 826
TfiI GAWTC 5 cut(s) 341, 404, 456, 673, 800
Tru1I TTAA 3 cut(s) 516, 536, 576
Tru9I TTAA 3 cut(s) 516, 536, 576
TscAI CASTG 2 cut(s) 372, 694
TseI GCWGC 2 cut(s) 62, 257
TspDTI ATGAA 5 cut(s) 369, 396, 434, 638, 713
TspRI CASTG 2 cut(s) 372, 694
Vha464I CTTAAG 1 cut(s) 515
VneI GTGCAC 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 1 cut(s) 625
XmnI GAANNNNTTC 1 cut(s) 340
XspI CTAG 2 cut(s) 54, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.