Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003885

Physical Location & Seq

Genomic Coordinates Forward (+)

10986917 .. 10988721

Gene Structure 1805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG116900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGACTCTGCACTTTGTCTCCATCGTGGTGCTCTACACATTCCTTCCACCACTAGCCGTGCAGCCGGATTAGCAAGGCCTTATTCCAGTTTCGAACCTTCTTCTCTTTCACTTTTTTCAAAGGCTTCCACATACCCCACCCTATCGCGACACACCTTCTGTAGTCCTGTAATATGTGTACTTAACAAGCCCTTGCCACCTTCGCCAAACTACGACAAAGACAATGGTAAAAGAATTGTGATAATGGTGGGGGGTGCTTCTGTAGTTTTGGCTTGTGTCCTTGGAGTCATCAACTACAACTTCAATTTCATTCCCACGGCCATTGCAGGGCTGCAAAAGAAAAGTTTGTCGCGCACACATAAAGAAAGGCCAGAGGAACCAGTAGTCGTGTCTAGGCCAGAAGAAGTGTTAGATTCGTTGTTGAAGGTGAATAGACATTTGTGTAACCAAAAAAAAAGAAACAAGATAGGCCCATCGATATCCAGGATGTTCAAATCGACAAAGCTGCTGCCGTCTATTCCCGACAGACCTACAAAGGAACACTTTGACAATCTTAAGATTGCAGTCGCGGATTTAATCAAGTCCGGAAAGTGCGATGAGGCAGAGACAAAACTTAGAGGGTTATACGAAAACATCCAAGGGAGTGAAGTTAAATACAATGTGGAGATGGAATTGGTACTAGTTCTCATTTTCCAGGGAAAATACGAAGAAGCTTTGAAATGTAGATGTCTCAGTCATGATGCCAGGGTTGGTGGGGATGGTCGATTTCCATATTACAAGGCTATTATCTACACCATGCTGAGTGGTGATGCTCGTGATAAAGCCGAGAGAGATAAAGCCGAGAAATACTCGCAAAAAGCCCAGATGTACTGGCAACAGTTTTTCGACTCCTTTTCCAGTCAACCACCTATACTGGTTGAGGTTCCGACTCCAAAGTCTGAAAGACCGCAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

35.68

Weight (kDa)

9.37

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34540 AT2G34540
fragaria_vesca	FvH4_3g05540 FvH4_3g05550
prunus_persica	Prupe.4G080600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014121 RchiOBHm_Chr5g0014151 RchiOBHm_Chr5g0014161
rosa_laevigata	RLG00000032083 RLG00000032086 RLG00000032087 RLG00000032173
rosa_multiflora	Rmu_sc0007767.1_g000023 Rmu_sc0027898.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062440 Rroxscaffold_1G00062450 Rroxscaffold_1G00062490
rosa_rugosa	Rorug05G0015800 Rorug05G0016100 Rorug05G0024500
rosa_samantha	Rh5AG109900 Rh5AG110000 Rh5BG106600 Rh5BG106800 Rh5BG107000 Rh5BG107100 Rh5BG116900 Rh5CG118500 Rh5CG119000 Rh5DG105300 Rh5DG105500 Rh5DG105600
rosa_wichuraiana	Rw5G009600 Rw5G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	934
AccII	CGCG	3 cut(s)	148, 352, 569
AccIII	TCCGGA	1 cut(s)	584
AciI	CCGC	2 cut(s)	569, 947
AcoI	YGGCCR	1 cut(s)	318
AfaI	GTAC	3 cut(s)	180, 678, 869
AfiI	CCNNNNNNNGG	1 cut(s)	327
AflII	CTTAAG	1 cut(s)	554
AgsI	TTSAA	5 cut(s)	120, 304, 424, 493, 718
AhlI	ACTAGT	1 cut(s)	679
AjnI	CCWGG	3 cut(s)	482, 693, 743
AluBI	AGCT	2 cut(s)	505, 713
AluI	AGCT	2 cut(s)	505, 713
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	3 cut(s)	23, 599, 734
Aor13HI	TCCGGA	1 cut(s)	584
AoxI	GGCC	5 cut(s)	77, 318, 368, 395, 469
ApeKI	GCWGC	4 cut(s)	62, 331, 505, 508
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	2 cut(s)	439, 818
AsuII	TTCGAA	1 cut(s)	93
BauI	CACGAG	1 cut(s)	813
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	4 cut(s)	74, 318, 492, 495
BccI	CCATC	4 cut(s)	30, 481, 661, 752
BceAI	ACGGC	3 cut(s)	42, 333, 496
BcgI	CGANNNNNNTGC	2 cut(s)	487, 521
BciT130I	CCWGG	3 cut(s)	484, 695, 745
BcoDI	GTCTC	3 cut(s)	23, 599, 734
BcuI	ACTAGT	1 cut(s)	679
BfaI	CTAG	3 cut(s)	54, 393, 680
BfmI	CTRYAG	2 cut(s)	160, 261
BfrI	CTTAAG	1 cut(s)	554
BisI	GCNGC	4 cut(s)	63, 332, 506, 509
BlsI	GCNGC	4 cut(s)	64, 333, 507, 510
Bme1390I	CCNGG	3 cut(s)	484, 695, 745
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	2 cut(s)	378, 924
BmrFI	CCNGG	3 cut(s)	484, 695, 745
BmsI	GCATC	2 cut(s)	730, 799
BplI	GAGNNNNNCTC	2 cut(s)	833, 865
Bpu14I	TTCGAA	1 cut(s)	93
Bsa29I	ATCGAT	1 cut(s)	476
BsaJI	CCNNGG	5 cut(s)	280, 315, 637, 694, 744
BsaWI	WCCGGW	1 cut(s)	584
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse1I	ACTGG	5 cut(s)	87, 380, 875, 897, 918
Bse3DI	GCAATG	1 cut(s)	321
BseAI	TCCGGA	1 cut(s)	584
BseBI	CCWGG	3 cut(s)	484, 695, 745
BseCI	ATCGAT	1 cut(s)	476
BseDI	CCNNGG	5 cut(s)	280, 315, 637, 694, 744
BseGI	GGATG	3 cut(s)	492, 633, 763
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	745, 791
BseNI	ACTGG	5 cut(s)	87, 380, 875, 897, 918
BseXI	GCAGC	4 cut(s)	74, 318, 492, 495
BsgI	GTGCAG	1 cut(s)	81
Bsh1236I	CGCG	3 cut(s)	148, 352, 569
BshFI	GGCC	5 cut(s)	79, 320, 370, 397, 471
BshVI	ATCGAT	1 cut(s)	476
BsiHKAI	GWGCWC	1 cut(s)	34
BsiSI	CCGG	2 cut(s)	66, 585
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	3 cut(s)	23, 599, 734
BsnI	GGCC	5 cut(s)	79, 320, 370, 397, 471
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp13I	TCCGGA	1 cut(s)	584
Bsp68I	TCGCGA	1 cut(s)	148
BspACI	CCGC	2 cut(s)	569, 947
BspANI	GGCC	5 cut(s)	79, 320, 370, 397, 471
BspCNI	CTCAG	2 cut(s)	744, 792
BspDI	ATCGAT	1 cut(s)	476
BspEI	TCCGGA	1 cut(s)	584
BspFNI	CGCG	3 cut(s)	148, 352, 569
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	2 cut(s)	378, 924
BspT104I	TTCGAA	1 cut(s)	93
BspTI	CTTAAG	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	5 cut(s)	87, 380, 875, 897, 918
BssECI	CCNNGG	5 cut(s)	280, 315, 637, 694, 744
BssSI	CACGAG	1 cut(s)	813
BssT1I	CCWWGG	2 cut(s)	280, 637
Bst2BI	CACGAG	1 cut(s)	813
Bst2UI	CCWGG	3 cut(s)	484, 695, 745
Bst4CI	ACNGT	1 cut(s)	879
BstAFI	CTTAAG	1 cut(s)	554
BstBI	TTCGAA	1 cut(s)	93
BstDEI	CTNAG	3 cut(s)	614, 731, 800
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	3 cut(s)	492, 633, 763
BstFNI	CGCG	3 cut(s)	148, 352, 569
BstHHI	GCGC	1 cut(s)	354
BstMAI	GTCTC	3 cut(s)	23, 599, 734
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 202
BstNI	CCWGG	3 cut(s)	484, 695, 745
BstSCI	CCNGG	3 cut(s)	482, 693, 743
BstSFI	CTRYAG	2 cut(s)	160, 261
BstUI	CGCG	3 cut(s)	148, 352, 569
BstV1I	GCAGC	4 cut(s)	74, 318, 492, 495
Bsu15I	ATCGAT	1 cut(s)	476
BsuRI	GGCC	5 cut(s)	79, 320, 370, 397, 471
BsuTUI	ATCGAT	1 cut(s)	476
BtgI	CCRYGG	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	609
BtsCI	GGATG	3 cut(s)	492, 633, 763
BtuMI	TCGCGA	1 cut(s)	148
CciI	TCATGA	1 cut(s)	736
CfoI	GCGC	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	470
ClaI	ATCGAT	1 cut(s)	476
Csp6I	GTAC	3 cut(s)	179, 677, 868
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	2 cut(s)	737, 796
CviQI	GTAC	3 cut(s)	179, 677, 868
DdeI	CTNAG	3 cut(s)	614, 731, 800
DrdI	GACNNNNNNGTC	1 cut(s)	934
DseDI	GACNNNNNNGTC	1 cut(s)	934
EaeI	YGGCCR	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	280, 637
Eco147I	AGGCCT	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	480
EcoRII	CCWGG	3 cut(s)	482, 693, 743
EcoRV	GATATC	1 cut(s)	480
EcoT14I	CCWWGG	2 cut(s)	280, 637
ErhI	CCWWGG	2 cut(s)	280, 637
FaeI	CATG	2 cut(s)	740, 799
FaiI	YATR	8 cut(s)	133, 175, 360, 625, 738, 772, 797, 911
FalI	AAGNNNNNCTT	2 cut(s)	527, 559
FatI	CATG	2 cut(s)	736, 795
Fnu4HI	GCNGC	4 cut(s)	63, 332, 506, 509
FokI	GGATG	3 cut(s)	499, 620, 770
Fsp4HI	GCNGC	4 cut(s)	63, 332, 506, 509
FspBI	CTAG	3 cut(s)	54, 393, 680
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	4 cut(s)	63, 332, 506, 509
HaeIII	GGCC	5 cut(s)	79, 320, 370, 397, 471
HapII	CCGG	2 cut(s)	66, 585
HhaI	GCGC	1 cut(s)	354
Hin1II	CATG	2 cut(s)	740, 799
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HincII	GTYRAC	1 cut(s)	902
HindII	GTYRAC	1 cut(s)	902
HindIII	AAGCTT	1 cut(s)	711
HinfI	GANTC	5 cut(s)	5, 285, 413, 887, 928
HpaII	CCGG	2 cut(s)	66, 585
HphI	GGTGA	2 cut(s)	439, 818
Hpy166II	GTNNAC	2 cut(s)	179, 902
Hpy188I	TCNGA	2 cut(s)	927, 940
Hpy188III	TCNNGA	5 cut(s)	147, 521, 585, 737, 815
Hpy8I	GTNNAC	2 cut(s)	179, 902
HpyAV	CCTTC	5 cut(s)	54, 108, 166, 210, 418
HpyCH4III	ACNGT	1 cut(s)	879
HpyCH4V	TGCA	5 cut(s)	11, 62, 326, 334, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 202
HpyF3I	CTNAG	3 cut(s)	614, 731, 800
Hsp92II	CATG	2 cut(s)	740, 799
HspAI	GCGC	1 cut(s)	352
Kpn2I	TCCGGA	1 cut(s)	584
Lsp1109I	GCAGC	4 cut(s)	74, 318, 492, 495
LweI	GCATC	2 cut(s)	730, 799
MaeI	CTAG	3 cut(s)	54, 393, 680
MaeIII	GTNAC	1 cut(s)	443
MboII	GAAGA	3 cut(s)	93, 413, 719
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	3 cut(s)	234, 304, 671
MlyI	GAGTC	3 cut(s)	294, 881, 922
MmeI	TCCRAC	1 cut(s)	950
MnlI	CCTC	4 cut(s)	367, 592, 611, 913
MroI	TCCGGA	1 cut(s)	584
MseI	TTAA	4 cut(s)	183, 555, 575, 651
MslI	CAYNNNNRTG	1 cut(s)	27
MspCI	CTTAAG	1 cut(s)	554
MspI	CCGG	2 cut(s)	66, 585
MspR9I	CCNGG	3 cut(s)	484, 695, 745
MvaI	CCWGG	3 cut(s)	484, 695, 745
MvnI	CGCG	3 cut(s)	148, 352, 569
MwoI	GCNNNNNNNGC	2 cut(s)	71, 202
NlaIII	CATG	2 cut(s)	740, 799
NlaIV	GGNNCC	2 cut(s)	378, 924
NmeAIII	GCCGAG	2 cut(s)	850, 865
NruI	TCGCGA	1 cut(s)	148
NspV	TTCGAA	1 cut(s)	93
PagI	TCATGA	1 cut(s)	736
PceI	AGGCCT	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	413
PfoI	TCCNGGA	1 cut(s)	482
PkrI	GCNGC	4 cut(s)	64, 333, 507, 510
PleI	GAGTC	3 cut(s)	293, 881, 922
PpsI	GAGTC	3 cut(s)	293, 881, 922
Psp6I	CCWGG	3 cut(s)	482, 693, 743
PspGI	CCWGG	3 cut(s)	482, 693, 743
PspN4I	GGNNCC	2 cut(s)	378, 924
PspPI	GGNCC	1 cut(s)	470
RruI	TCGCGA	1 cut(s)	148
RsaI	GTAC	3 cut(s)	180, 678, 869
RsaNI	GTAC	3 cut(s)	179, 677, 868
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	4 cut(s)	183, 555, 575, 651
SatI	GCNGC	4 cut(s)	63, 332, 506, 509
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	3 cut(s)	294, 881, 922
ScrFI	CCNGG	3 cut(s)	484, 695, 745
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	9 cut(s)	100, 158, 202, 429, 507, 532, 715, 910, 924
SfaNI	GCATC	2 cut(s)	730, 799
SfcI	CTRYAG	2 cut(s)	160, 261
SfuI	TTCGAA	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
SpeI	ACTAGT	1 cut(s)	679
Sse9I	AATT	3 cut(s)	234, 304, 671
SseBI	AGGCCT	1 cut(s)	79
SsiI	CCGC	2 cut(s)	569, 947
SspMI	CTAG	3 cut(s)	54, 393, 680
StuI	AGGCCT	1 cut(s)	79
StyD4I	CCNGG	3 cut(s)	482, 693, 743
StyI	CCWWGG	2 cut(s)	280, 637
TaaI	ACNGT	1 cut(s)	879
TaqI	TCGA	5 cut(s)	93, 476, 497, 763, 885
TasI	AATT	3 cut(s)	234, 304, 671
TatI	WGTACW	2 cut(s)	178, 867
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	4 cut(s)	183, 555, 575, 651
Tru9I	TTAA	4 cut(s)	183, 555, 575, 651
TseI	GCWGC	4 cut(s)	62, 331, 505, 508
TspDTI	ATGAA	1 cut(s)	298
Vha464I	CTTAAG	1 cut(s)	554
XspI	CTAG	3 cut(s)	54, 393, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.