Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003885

Physical Location & Seq

Genomic Coordinates Forward (+)

9871347 .. 9885427

Gene Structure 14081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG106800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGATGGACTCTGCACTTTGTCTCCATCGTGGTGCTCTACACATTCCTTCCACCACTAGCCGTGCAGCCGGATTAGCAAGGCCTTTTTCCAGTTTCAGACCTCCTTCTCTTTCACTTTTTTCCAAGGCTTCCACATACCGCACCCTATCGCGACACACCTTCAGCAGTCCTGTGATATGTGCACTTAACATACCCTCGCCACCTTCGCCAAACTACGACAGAGACAATGGTAAAAAAGTTGTGATAGTGGTGGGGGGTGCTTCTGTAGTTTTGGCTTGTGTCCTTGGAGTCATCAACTACAACTTCAATTTCAGTCCCACAGCCATTGCAGCCCCTATAGTCGTGTCTAGGCCAAAAGCCGCGTTAGATTCATTGTTGACGTTGAACAAGCATTTAGCCACATCAAAGAGTACATGGAGCGTGTTCAAATCGAAACCACAGGTGTATATTCCCGAGACACCTACAAAGGAAGACTATGACAATCTCAAGATTGCAGTAGCGGATTTAATCAAGTCCGGAAAGTGCGATGTGGCAAAGAGTCAACTTATTAATTTATACAAAGAAACCATAGAGAAAAAATGGCTTATTCCTGCAAATGAAGTGGAGATGGAATTGGCACTAGTTCTCATTTTCCAGGGAAATTACGAAGAAGCTTTGAAATGTAAATGTCTCAGTGATGATGCCAAGGTTGATTCGGATGGTCGAGTTTCATTTTACAAGGCTATTATCTACACCATGCTCGATCGGGATGGGGAACCCCAGTACCGGAAGGAAGCCGAGAAGTACTGGAAACTCTTTATCAAGTCCTTTCCAAGTCAACCACAGTCGTATTGCGTTCCGGATATTTGGATACTATCCGGAGGCAAAGGAAATGATTGTCATAAGGCTGCAATTACAGGAGACATAGTGGGAGACCCATTCAAAGACACAGCTAGACCTTCACTTCATGACCCATTCAATAACTTGATTATACTATTCAGCAGTGTTGGAGTTTTCATAAATCCAGCATTAGTGGAACCATTTGGGCTAACCTTGATTGAGGCGGCAGCACACGGGCTTCCGATGGTGGCTACAAAAAATGGTGGACCGGTTGATATACATCGGTATCGTGCCAATGAGTTGTTAGTACTGACAGATAAGCAAATAGTTGCCAAGGTGACATCTTACCTGTCAAAGGGCATCAAGGACTTCGAGAATGCTGCTGTGATAAATAAGGACAAGTTTTATGTTTTCCTGCTCTATGTATTTATATGCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

419

Amino Acids

46.18

Weight (kDa)

8.85

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	287 - 316	2.8e-10	Inorganic H+ pyrophosphatase
Glycos_transf_1	PF00534	320 - 393	1.3e-09	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	321 - 389	1e-08	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34540 AT2G34540
fragaria_vesca	FvH4_3g05540 FvH4_3g05550
prunus_persica	Prupe.4G080600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014121 RchiOBHm_Chr5g0014151 RchiOBHm_Chr5g0014161
rosa_laevigata	RLG00000032083 RLG00000032086 RLG00000032087 RLG00000032173
rosa_multiflora	Rmu_sc0007767.1_g000023 Rmu_sc0027898.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062440 Rroxscaffold_1G00062450 Rroxscaffold_1G00062490
rosa_rugosa	Rorug05G0015800 Rorug05G0016100 Rorug05G0024500
rosa_samantha	Rh5AG109900 Rh5AG110000 Rh5BG106600 Rh5BG106800 Rh5BG107000 Rh5BG107100 Rh5BG116900 Rh5CG118500 Rh5CG119000 Rh5DG105300 Rh5DG105500 Rh5DG105600
rosa_wichuraiana	Rw5G009600 Rw5G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	151, 362
AccIII	TCCGGA	3 cut(s)	515, 838, 857
AciI	CCGC	4 cut(s)	139, 360, 500, 1043
AcuI	CTGAAG	1 cut(s)	145
AfaI	GTAC	4 cut(s)	412, 764, 785, 1128
AfiI	CCNNNNNNNGG	2 cut(s)	765, 1174
AgeI	ACCGGT	1 cut(s)	1087
AgsI	TTSAA	6 cut(s)	307, 385, 427, 658, 922, 958
AhlI	ACTAGT	1 cut(s)	619
AjnI	CCWGG	1 cut(s)	633
AluBI	AGCT	2 cut(s)	653, 932
AluI	AGCT	2 cut(s)	653, 932
Alw21I	GWGCWC	2 cut(s)	37, 184
Alw26I	GTCTC	6 cut(s)	26, 216, 449, 674, 894, 906
Alw44I	GTGCAC	1 cut(s)	180
Ama87I	CYCGRG	1 cut(s)	452
Aor13HI	TCCGGA	3 cut(s)	515, 838, 857
AoxI	GGCC	2 cut(s)	80, 350
ApaLI	GTGCAC	1 cut(s)	180
ApeKI	GCWGC	5 cut(s)	65, 329, 887, 1046, 1199
AseI	ATTAAT	1 cut(s)	549
AsiGI	ACCGGT	1 cut(s)	1087
AspS9I	GGNCC	1 cut(s)	1085
AsuHPI	GGTGA	1 cut(s)	1168
AvaI	CYCGRG	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	1085
BaeGI	GKGCMC	1 cut(s)	184
BaeI	ACNNNNGTAYC	4 cut(s)	746, 779, 1088, 1121
BbsI	GAAGAC	1 cut(s)	477
Bbv12I	GWGCWC	2 cut(s)	37, 184
BbvI	GCAGC	5 cut(s)	77, 341, 874, 1058, 1186
BccI	CCATC	5 cut(s)	33, 601, 692, 743, 1057
BceAI	ACGGC	1 cut(s)	45
BcgI	CGANNNNNNTGC	2 cut(s)	1181, 1215
BciT130I	CCWGG	1 cut(s)	635
BciVI	GTATCC	1 cut(s)	843
BcoDI	GTCTC	6 cut(s)	26, 216, 449, 674, 894, 906
BcuI	ACTAGT	1 cut(s)	619
BfaI	CTAG	4 cut(s)	57, 348, 620, 933
BfmI	CTRYAG	2 cut(s)	264, 336
BfuI	GTATCC	1 cut(s)	843
BisI	GCNGC	7 cut(s)	66, 330, 360, 888, 1044, 1047, 1200
BlsI	GCNGC	7 cut(s)	67, 331, 361, 889, 1045, 1048, 1201
BmcAI	AGTACT	2 cut(s)	785, 1128
Bme1390I	CCNGG	1 cut(s)	635
Bme18I	GGWCC	1 cut(s)	1085
BmeT110I	CYCGRG	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	1085
BmiI	GGNNCC	2 cut(s)	756, 1017
BmrFI	CCNGG	1 cut(s)	635
BmrI	ACTGGG	1 cut(s)	754
BmsI	GCATC	2 cut(s)	670, 1188
BmuI	ACTGGG	1 cut(s)	754
BpiI	GAAGAC	1 cut(s)	477
BpuEI	CTTGAG	1 cut(s)	470
BsaBI	GATNNNNATC	1 cut(s)	1098
BsaI	GGTCTC	1 cut(s)	906
BsaJI	CCNNGG	5 cut(s)	123, 283, 634, 684, 1152
BsaWI	WCCGGW	5 cut(s)	515, 765, 838, 857, 1087
BsaXI	ACNNNNNCTCC	4 cut(s)	6, 36, 891, 921
Bsc4I	CCNNNNNNNGG	2 cut(s)	765, 1174
Bse118I	RCCGGY	1 cut(s)	1087
Bse1I	ACTGG	3 cut(s)	90, 760, 791
Bse3DI	GCAATG	1 cut(s)	324
Bse8I	GATNNNNATC	1 cut(s)	1098
BseAI	TCCGGA	3 cut(s)	515, 838, 857
BseBI	CCWGG	1 cut(s)	635
BseDI	CCNNGG	5 cut(s)	123, 283, 634, 684, 1152
BseGI	GGATG	2 cut(s)	703, 754
BseJI	GATNNNNATC	1 cut(s)	1098
BseLI	CCNNNNNNNGG	2 cut(s)	765, 1174
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	685
BseNI	ACTGG	3 cut(s)	90, 760, 791
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	5 cut(s)	77, 341, 874, 1058, 1186
BsgI	GTGCAG	1 cut(s)	84
Bsh1236I	CGCG	2 cut(s)	151, 362
Bsh1285I	CGRYCG	1 cut(s)	745
BshFI	GGCC	2 cut(s)	82, 352
BshTI	ACCGGT	1 cut(s)	1087
BsiEI	CGRYCG	1 cut(s)	745
BsiHKAI	GWGCWC	2 cut(s)	37, 184
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	6 cut(s)	69, 516, 766, 839, 858, 1088
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	2 cut(s)	765, 1174
BsmAI	GTCTC	6 cut(s)	26, 216, 449, 674, 894, 906
BsmFI	GGGAC	1 cut(s)	300
BsmI	GAATGC	1 cut(s)	1201
BsnI	GGCC	2 cut(s)	82, 352
Bso31I	GGTCTC	1 cut(s)	906
BsoBI	CYCGRG	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	37, 184
Bsp13I	TCCGGA	3 cut(s)	515, 838, 857
Bsp143I	GATC	1 cut(s)	742
Bsp68I	TCGCGA	1 cut(s)	151
BspACI	CCGC	4 cut(s)	139, 360, 500, 1043
BspANI	GGCC	2 cut(s)	82, 352
BspCNI	CTCAG	1 cut(s)	684
BspEI	TCCGGA	3 cut(s)	515, 838, 857
BspFNI	CGCG	2 cut(s)	151, 362
BspHI	TCATGA	1 cut(s)	946
BspLI	GGNNCC	2 cut(s)	756, 1017
BspTNI	GGTCTC	1 cut(s)	906
BsrDI	GCAATG	1 cut(s)	324
BsrFI	RCCGGY	1 cut(s)	1087
BsrI	ACTGG	3 cut(s)	90, 760, 791
BssAI	RCCGGY	1 cut(s)	1087
BssECI	CCNNGG	5 cut(s)	123, 283, 634, 684, 1152
BssMI	GATC	1 cut(s)	742
BssT1I	CCWWGG	4 cut(s)	123, 283, 684, 1152
Bst2UI	CCWGG	1 cut(s)	635
Bst4CI	ACNGT	1 cut(s)	825
BstDEI	CTNAG	2 cut(s)	671, 1257
BstENI	CCTNNNNNAGG	1 cut(s)	1172
BstF5I	GGATG	2 cut(s)	703, 754
BstFNI	CGCG	2 cut(s)	151, 362
BstKTI	GATC	1 cut(s)	745
BstMAI	GTCTC	6 cut(s)	26, 216, 449, 674, 894, 906
BstMBI	GATC	1 cut(s)	742
BstMCI	CGRYCG	1 cut(s)	745
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 205, 329
BstNI	CCWGG	1 cut(s)	635
BstSCI	CCNGG	1 cut(s)	633
BstSFI	CTRYAG	2 cut(s)	264, 336
BstSLI	GKGCMC	1 cut(s)	184
BstUI	CGCG	2 cut(s)	151, 362
BstV1I	GCAGC	5 cut(s)	77, 341, 874, 1058, 1186
BstV2I	GAAGAC	1 cut(s)	477
BsuI	GTATCC	1 cut(s)	843
BsuRI	GGCC	2 cut(s)	82, 352
BtgZI	GCGATG	1 cut(s)	540
BtsCI	GGATG	2 cut(s)	703, 754
BtsI	GCAGTG	1 cut(s)	988
BtsIMutI	CAGTG	2 cut(s)	679, 988
BtuMI	TCGCGA	1 cut(s)	151
CciI	TCATGA	1 cut(s)	946
Cfr10I	RCCGGY	1 cut(s)	1087
Cfr13I	GGNCC	1 cut(s)	1085
Csp6I	GTAC	4 cut(s)	411, 763, 784, 1127
CspAI	ACCGGT	1 cut(s)	1087
CspCI	CAANNNNNGTGG	4 cut(s)	307, 342, 582, 617
CviAII	CATG	3 cut(s)	414, 736, 947
CviQI	GTAC	4 cut(s)	411, 763, 784, 1127
DdeI	CTNAG	2 cut(s)	671, 1257
DpnI	GATC	1 cut(s)	744
DpnII	GATC	1 cut(s)	742
Eco130I	CCWWGG	4 cut(s)	123, 283, 684, 1152
Eco147I	AGGCCT	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	906
Eco47I	GGWCC	1 cut(s)	1085
Eco57I	CTGAAG	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	452
EcoNI	CCTNNNNNAGG	1 cut(s)	1172
EcoRII	CCWGG	1 cut(s)	633
EcoT14I	CCWWGG	4 cut(s)	123, 283, 684, 1152
ErhI	CCWWGG	4 cut(s)	123, 283, 684, 1152
FaeI	CATG	3 cut(s)	417, 739, 950
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	3 cut(s)	413, 735, 946
Fnu4HI	GCNGC	7 cut(s)	66, 330, 360, 888, 1044, 1047, 1200
FokI	GGATG	2 cut(s)	710, 761
Fsp4HI	GCNGC	7 cut(s)	66, 330, 360, 888, 1044, 1047, 1200
FspBI	CTAG	4 cut(s)	57, 348, 620, 933
GluI	GCNGC	7 cut(s)	66, 330, 360, 888, 1044, 1047, 1200
HaeIII	GGCC	2 cut(s)	82, 352
HapII	CCGG	6 cut(s)	69, 516, 766, 839, 858, 1088
Hin1II	CATG	3 cut(s)	417, 739, 950
HincII	GTYRAC	3 cut(s)	378, 542, 818
HindII	GTYRAC	3 cut(s)	378, 542, 818
HindIII	AAGCTT	1 cut(s)	651
HinfI	GANTC	5 cut(s)	8, 288, 368, 538, 692
HpaII	CCGG	6 cut(s)	69, 516, 766, 839, 858, 1088
HphI	GGTGA	1 cut(s)	1168
Hpy166II	GTNNAC	5 cut(s)	182, 378, 542, 818, 1085
Hpy188I	TCNGA	3 cut(s)	98, 697, 1062
Hpy188III	TCNNGA	9 cut(s)	150, 452, 487, 516, 746, 839, 858, 947, 1192
Hpy8I	GTNNAC	5 cut(s)	182, 378, 542, 818, 1085
HpyAV	CCTTC	6 cut(s)	57, 114, 169, 213, 763, 948
HpyCH4III	ACNGT	1 cut(s)	825
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	8 cut(s)	14, 65, 182, 329, 494, 593, 890, 1254
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 205, 329
HpyF3I	CTNAG	2 cut(s)	671, 1257
HpySE526I	ACGT	1 cut(s)	380
Hsp92II	CATG	3 cut(s)	417, 739, 950
Kpn2I	TCCGGA	3 cut(s)	515, 838, 857
Kzo9I	GATC	1 cut(s)	742
LmnI	GCTCC	1 cut(s)	417
Lsp1109I	GCAGC	5 cut(s)	77, 341, 874, 1058, 1186
LweI	GCATC	2 cut(s)	670, 1188
MaeI	CTAG	4 cut(s)	57, 348, 620, 933
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	1156
MalI	GATC	1 cut(s)	744
MboI	GATC	1 cut(s)	742
MboII	GAAGA	2 cut(s)	482, 659
MhlI	GDGCHC	2 cut(s)	37, 184
MluCI	AATT	5 cut(s)	307, 550, 611, 640, 891
MlyI	GAGTC	3 cut(s)	2, 297, 547
MmeI	TCCRAC	1 cut(s)	967
MnlI	CCTC	4 cut(s)	111, 205, 854, 1033
MroI	TCCGGA	3 cut(s)	515, 838, 857
MseI	TTAA	3 cut(s)	186, 506, 549
MslI	CAYNNNNRTG	1 cut(s)	30
MspI	CCGG	6 cut(s)	69, 516, 766, 839, 858, 1088
MspR9I	CCNGG	1 cut(s)	635
Mva1269I	GAATGC	1 cut(s)	1201
MvaI	CCWGG	1 cut(s)	635
MvnI	CGCG	2 cut(s)	151, 362
MwoI	GCNNNNNNNGC	3 cut(s)	74, 205, 329
NdeII	GATC	1 cut(s)	742
NlaIII	CATG	3 cut(s)	417, 739, 950
NlaIV	GGNNCC	2 cut(s)	756, 1017
NmeAIII	GCCGAG	1 cut(s)	802
NmuCI	GTSAC	1 cut(s)	1156
NruI	TCGCGA	1 cut(s)	151
PagI	TCATGA	1 cut(s)	946
PceI	AGGCCT	1 cut(s)	82
PctI	GAATGC	1 cut(s)	1201
PfeI	GAWTC	2 cut(s)	368, 692
PinAI	ACCGGT	1 cut(s)	1087
PkrI	GCNGC	7 cut(s)	67, 331, 361, 889, 1045, 1048, 1201
Ple19I	CGATCG	1 cut(s)	745
PleI	GAGTC	3 cut(s)	2, 296, 546
PpsI	GAGTC	3 cut(s)	2, 296, 546
PshBI	ATTAAT	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	633
PspGI	CCWGG	1 cut(s)	633
PspN4I	GGNNCC	2 cut(s)	756, 1017
PspPI	GGNCC	1 cut(s)	1085
PvuI	CGATCG	1 cut(s)	745
RruI	TCGCGA	1 cut(s)	151
RsaI	GTAC	4 cut(s)	412, 764, 785, 1128
RsaNI	GTAC	4 cut(s)	411, 763, 784, 1127
RseI	CAYNNNNRTG	1 cut(s)	30
SaqAI	TTAA	3 cut(s)	186, 506, 549
SatI	GCNGC	7 cut(s)	66, 330, 360, 888, 1044, 1047, 1200
Sau3AI	GATC	1 cut(s)	742
Sau96I	GGNCC	1 cut(s)	1085
ScaI	AGTACT	2 cut(s)	785, 1128
SchI	GAGTC	3 cut(s)	2, 297, 547
ScrFI	CCNGG	1 cut(s)	635
SduI	GDGCHC	2 cut(s)	37, 184
SfaNI	GCATC	2 cut(s)	670, 1188
SfcI	CTRYAG	2 cut(s)	264, 336
SinI	GGWCC	1 cut(s)	1085
SmiMI	CAYNNNNRTG	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
SpeI	ACTAGT	1 cut(s)	619
Sse9I	AATT	5 cut(s)	307, 550, 611, 640, 891
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	4 cut(s)	139, 360, 500, 1043
SspMI	CTAG	4 cut(s)	57, 348, 620, 933
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	633
StyI	CCWWGG	4 cut(s)	123, 283, 684, 1152
TaaI	ACNGT	1 cut(s)	825
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	4 cut(s)	431, 703, 741, 1191
TasI	AATT	5 cut(s)	307, 550, 611, 640, 891
TatI	WGTACW	3 cut(s)	410, 783, 1126
TauI	GCSGC	2 cut(s)	362, 1046
TfiI	GAWTC	2 cut(s)	368, 692
Tru1I	TTAA	3 cut(s)	186, 506, 549
Tru9I	TTAA	3 cut(s)	186, 506, 549
TscAI	CASTG	2 cut(s)	679, 988
TseFI	GTSAC	1 cut(s)	1156
TseI	GCWGC	5 cut(s)	65, 329, 887, 1046, 1199
Tsp45I	GTSAC	1 cut(s)	1156
TspDTI	ATGAA	5 cut(s)	360, 612, 699, 935, 985
TspRI	CASTG	2 cut(s)	679, 988
VneI	GTGCAC	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	1085
VspI	ATTAAT	1 cut(s)	549
XagI	CCTNNNNNAGG	1 cut(s)	1172
XspI	CTAG	4 cut(s)	57, 348, 620, 933
ZrmI	AGTACT	2 cut(s)	785, 1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.