Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003885

Physical Location & Seq

Genomic Coordinates Forward (+)

10742663 .. 10745435

Gene Structure 2773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032083

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGATGGACTCTGCACTTTTTCTCCATCGTGGTGCTCTACACATTCCTTCCACCACTAGCCGTGCCGCAGTATTAGCAAGGTCTTATTCTAGTTTCAGACGTTCGTCTCTTTCACTTTTTTCAAAGGCTTCCACATACCCCACCATATCCCGACACACCTTCAGTAGTCCTGTGATATGTGCACTTAACAAGCAGCCCTCGCCACCTTCGCCAAACTACGACAAAGACAATGGTAAAAAAATTGTGATGGTGGGGGGTGCTTCTGAAGTTCTGGCTTGTGCCCCTGGAGTCATCAACTACAACTTCAATTTCAGTCCCACAGCCATTGCCTGCATGAATAATAATTCTTCGTCCTTAACTGAAGAAGACCCAAAGGTTGTCTTGCCTGCACCGAAAGAAGTGTTGGATTCATTTTTGAAGTTAAATAGACATATAACCACACCCAAGAGTGGATGTACACTGCAGCTGTCTATTTTTGACTCTTTCCCCGCCAGGCCAACAAACGACGACTATGACAAGCTTGAGATTGAAATAGCGGATTTAATCAAGTCCGGAATGTGCAATGAGGCAGAGACAAAACTTAAAGGGATATACGAAAAAGTCCAAGGGAGTGAAGTTAAATACCGAGTGGAGATGGAATTGGTACTAGTTCTCATTTTTCAGGGAAAATACGAAAAATACAAAGAGGCTTCGGAACGTGGTTGTCTCAAGTGTGAACCCATGAATAGTTCAAATGGTCGAGTTCATTTTTATAAGGCTATTATCTACACCATGTTGGGCGATCAGGGTGATATAGCCAAGAAACACTGGGACATATTTTTATTATCTCTCAAGCTCGCTGGCAACGTTGAAGACAAAGGCTTGGCTGGTCGTCGTCATGGTGGTGCTCATCTCTCAGCATATCTCGTTGAACAATTTGAGAACTGGCGAATCTCATTAAGCTTGGCATCAATAGCGGTTTCGCGGCGTTGGCGCCTAATCTCCAAAGAAACCTCCAGCTTCTCTCTGATGAACAGGTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

342

Amino Acids

37.99

Weight (kDa)

9.1

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34540 AT2G34540
fragaria_vesca	FvH4_3g05540 FvH4_3g05550
prunus_persica	Prupe.4G080600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014121 RchiOBHm_Chr5g0014151 RchiOBHm_Chr5g0014161
rosa_laevigata	RLG00000032083 RLG00000032086 RLG00000032087 RLG00000032173
rosa_multiflora	Rmu_sc0007767.1_g000023 Rmu_sc0027898.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062440 Rroxscaffold_1G00062450 Rroxscaffold_1G00062490
rosa_rugosa	Rorug05G0015800 Rorug05G0016100 Rorug05G0024500
rosa_samantha	Rh5AG109900 Rh5AG110000 Rh5BG106600 Rh5BG106800 Rh5BG107000 Rh5BG107100 Rh5BG116900 Rh5CG118500 Rh5CG119000 Rh5DG105300 Rh5DG105500 Rh5DG105600
rosa_wichuraiana	Rw5G009600 Rw5G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	753
AccB1I	GGYRCC	1 cut(s)	972
AccII	CGCG	1 cut(s)	964
AccIII	TCCGGA	1 cut(s)	551
AciI	CCGC	5 cut(s)	66, 489, 536, 956, 964
AclI	AACGTT	1 cut(s)	846
AcuI	CTGAAG	3 cut(s)	145, 285, 381
AcyI	GRCGYC	1 cut(s)	973
AfaI	GTAC	2 cut(s)	457, 645
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	7 cut(s)	123, 307, 418, 530, 732, 851, 911
AhlI	ACTAGT	1 cut(s)	646
AjnI	CCWGG	2 cut(s)	283, 491
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AluBI	AGCT	6 cut(s)	466, 520, 835, 942, 999, 1023
AluI	AGCT	6 cut(s)	466, 520, 835, 942, 999, 1023
Alw21I	GWGCWC	3 cut(s)	37, 184, 889
Alw26I	GTCTC	3 cut(s)	111, 566, 710
Alw44I	GTGCAC	1 cut(s)	180
Aor13HI	TCCGGA	1 cut(s)	551
AoxI	GGCC	1 cut(s)	494
ApaLI	GTGCAC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	193, 463
AspLEI	GCGC	1 cut(s)	975
AsuHPI	GGTGA	1 cut(s)	800
BaeGI	GKGCMC	2 cut(s)	184, 283
BanI	GGYRCC	1 cut(s)	972
BbsI	GAAGAC	2 cut(s)	372, 858
Bbv12I	GWGCWC	3 cut(s)	37, 184, 889
BbvI	GCAGC	2 cut(s)	205, 475
BccI	CCATC	3 cut(s)	33, 241, 628
BceAI	ACGGC	1 cut(s)	45
BciT130I	CCWGG	2 cut(s)	285, 493
BcoDI	GTCTC	3 cut(s)	111, 566, 710
BcuI	ACTAGT	1 cut(s)	646
BfaI	CTAG	3 cut(s)	57, 90, 647
BfmI	CTRYAG	1 cut(s)	461
BfoI	RGCGCY	1 cut(s)	976
BisI	GCNGC	4 cut(s)	66, 194, 464, 965
BlsI	GCNGC	4 cut(s)	67, 195, 465, 966
Bme1390I	CCNGG	2 cut(s)	285, 493
BmiI	GGNNCC	1 cut(s)	974
BmrFI	CCNGG	2 cut(s)	285, 493
BmrI	ACTGGG	1 cut(s)	817
BmsI	GCATC	1 cut(s)	956
BmuI	ACTGGG	1 cut(s)	817
BoxI	GACNNNNGTC	1 cut(s)	103
BpiI	GAAGAC	2 cut(s)	372, 858
BpmI	CTGGAG	2 cut(s)	306, 979
BpuEI	CTTGAG	3 cut(s)	542, 692, 815
BsaHI	GRCGYC	1 cut(s)	973
BsaJI	CCNNGG	2 cut(s)	283, 604
BsaWI	WCCGGW	1 cut(s)	551
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	2 cut(s)	812, 929
Bse3DI	GCAATG	2 cut(s)	324, 568
BseAI	TCCGGA	1 cut(s)	551
BseBI	CCWGG	2 cut(s)	285, 493
BseDI	CCNNGG	2 cut(s)	283, 604
BseGI	GGATG	1 cut(s)	458
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMI	GCAATG	2 cut(s)	324, 568
BseMII	CTCAG	1 cut(s)	909
BseNI	ACTGG	2 cut(s)	812, 929
BseSI	GKGCMC	2 cut(s)	184, 283
BseXI	GCAGC	2 cut(s)	205, 475
BsgI	GTGCAG	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	964
BshFI	GGCC	1 cut(s)	496
BshNI	GGYRCC	1 cut(s)	972
BsiHKAI	GWGCWC	3 cut(s)	37, 184, 889
BsiSI	CCGG	1 cut(s)	552
BslFI	GGGAC	2 cut(s)	300, 824
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	3 cut(s)	111, 566, 710
BsmBI	CGTCTC	1 cut(s)	111
BsmFI	GGGAC	2 cut(s)	300, 824
BsnI	GGCC	1 cut(s)	496
Bsp1286I	GDGCHC	4 cut(s)	37, 184, 283, 889
Bsp13I	TCCGGA	1 cut(s)	551
Bsp1407I	TGTACA	1 cut(s)	455
Bsp143I	GATC	1 cut(s)	781
BspACI	CCGC	5 cut(s)	66, 489, 536, 956, 964
BspANI	GGCC	1 cut(s)	496
BspCNI	CTCAG	1 cut(s)	908
BspEI	TCCGGA	1 cut(s)	551
BspFNI	CGCG	1 cut(s)	964
BspLI	GGNNCC	1 cut(s)	974
BspMAI	CTGCAG	1 cut(s)	465
BspT107I	GGYRCC	1 cut(s)	972
BsrDI	GCAATG	2 cut(s)	324, 568
BsrGI	TGTACA	1 cut(s)	455
BsrI	ACTGG	2 cut(s)	812, 929
BssECI	CCNNGG	2 cut(s)	283, 604
BssMI	GATC	1 cut(s)	781
BssNI	GRCGYC	1 cut(s)	973
BssT1I	CCWWGG	1 cut(s)	604
Bst2UI	CCWGG	2 cut(s)	285, 493
BstACI	GRCGYC	1 cut(s)	973
BstAUI	TGTACA	1 cut(s)	455
BstC8I	GCNNGC	4 cut(s)	331, 387, 837, 841
BstDEI	CTNAG	1 cut(s)	895
BstF5I	GGATG	1 cut(s)	458
BstFNI	CGCG	1 cut(s)	964
BstH2I	RGCGCY	1 cut(s)	976
BstHHI	GCGC	1 cut(s)	975
BstKTI	GATC	1 cut(s)	784
BstMAI	GTCTC	3 cut(s)	111, 566, 710
BstMBI	GATC	1 cut(s)	781
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 199, 208, 953, 970
BstNI	CCWGG	2 cut(s)	285, 493
BstPAI	GACNNNNGTC	1 cut(s)	103
BstSCI	CCNGG	2 cut(s)	283, 491
BstSFI	CTRYAG	1 cut(s)	461
BstSLI	GKGCMC	2 cut(s)	184, 283
BstUI	CGCG	1 cut(s)	964
BstV1I	GCAGC	2 cut(s)	205, 475
BstV2I	GAAGAC	2 cut(s)	372, 858
BsuRI	GGCC	1 cut(s)	496
BtsCI	GGATG	1 cut(s)	458
BtsI	GCAGTG	1 cut(s)	458
BtsIMutI	CAGTG	2 cut(s)	458, 805
Cac8I	GCNNGC	4 cut(s)	331, 387, 837, 841
CfoI	GCGC	1 cut(s)	975
Csp6I	GTAC	2 cut(s)	456, 644
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviAII	CATG	4 cut(s)	334, 721, 772, 878
CviQI	GTAC	2 cut(s)	456, 644
DdeI	CTNAG	1 cut(s)	895
DinI	GGCGCC	1 cut(s)	974
DpnI	GATC	1 cut(s)	783
DpnII	GATC	1 cut(s)	781
Eco130I	CCWWGG	1 cut(s)	604
Eco57I	CTGAAG	3 cut(s)	145, 285, 381
EcoRII	CCWGG	2 cut(s)	283, 491
EcoT14I	CCWWGG	1 cut(s)	604
EgeI	GGCGCC	1 cut(s)	974
EheI	GGCGCC	1 cut(s)	974
ErhI	CCWWGG	1 cut(s)	604
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	4 cut(s)	337, 724, 775, 881
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	2 cut(s)	300, 824
FatI	CATG	4 cut(s)	333, 720, 771, 877
FauI	CCCGC	1 cut(s)	496
Fnu4HI	GCNGC	4 cut(s)	66, 194, 464, 965
FokI	GGATG	1 cut(s)	465
Fsp4HI	GCNGC	4 cut(s)	66, 194, 464, 965
FspBI	CTAG	3 cut(s)	57, 90, 647
GlaI	GCGC	1 cut(s)	974
GluI	GCNGC	4 cut(s)	66, 194, 464, 965
GsuI	CTGGAG	2 cut(s)	306, 979
HaeII	RGCGCY	1 cut(s)	976
HaeIII	GGCC	1 cut(s)	496
HapII	CCGG	1 cut(s)	552
HhaI	GCGC	1 cut(s)	975
Hin1I	GRCGYC	1 cut(s)	973
Hin1II	CATG	4 cut(s)	337, 724, 775, 881
Hin6I	GCGC	1 cut(s)	973
HinP1I	GCGC	1 cut(s)	973
HindIII	AAGCTT	2 cut(s)	518, 940
HinfI	GANTC	5 cut(s)	8, 288, 407, 479, 930
HpaII	CCGG	1 cut(s)	552
HphI	GGTGA	1 cut(s)	800
Hpy166II	GTNNAC	3 cut(s)	182, 458, 716
Hpy188I	TCNGA	4 cut(s)	98, 265, 694, 1008
Hpy188III	TCNNGA	2 cut(s)	150, 552
Hpy8I	GTNNAC	3 cut(s)	182, 458, 716
Hpy99I	CGWCG	2 cut(s)	509, 876
HpyAV	CCTTC	3 cut(s)	57, 169, 216
HpyCH4IV	ACGT	3 cut(s)	100, 697, 846
HpyCH4V	TGCA	6 cut(s)	14, 182, 333, 389, 463, 561
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 199, 208, 953, 970
HpyF3I	CTNAG	1 cut(s)	895
HpySE526I	ACGT	3 cut(s)	100, 697, 846
Hsp92I	GRCGYC	1 cut(s)	973
Hsp92II	CATG	4 cut(s)	337, 724, 775, 881
HspAI	GCGC	1 cut(s)	973
KasI	GGCGCC	1 cut(s)	972
Kpn2I	TCCGGA	1 cut(s)	551
Kzo9I	GATC	1 cut(s)	781
LmnI	GCTCC	1 cut(s)	1020
Lsp1109I	GCAGC	2 cut(s)	205, 475
LweI	GCATC	1 cut(s)	956
MaeI	CTAG	3 cut(s)	57, 90, 647
MaeII	ACGT	3 cut(s)	100, 697, 846
MalI	GATC	1 cut(s)	783
MboI	GATC	1 cut(s)	781
MboII	GAAGA	4 cut(s)	339, 374, 377, 863
MhlI	GDGCHC	4 cut(s)	37, 184, 283, 889
MluCI	AATT	5 cut(s)	240, 307, 343, 638, 914
Mly113I	GGCGCC	1 cut(s)	973
MlyI	GAGTC	3 cut(s)	2, 297, 473
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	4 cut(s)	208, 559, 679, 1003
MroI	TCCGGA	1 cut(s)	551
MseI	TTAA	7 cut(s)	186, 356, 422, 542, 582, 618, 938
MslI	CAYNNNNRTG	2 cut(s)	30, 882
MspA1I	CMGCKG	1 cut(s)	466
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	2 cut(s)	285, 493
MvaI	CCWGG	2 cut(s)	285, 493
MvnI	CGCG	1 cut(s)	964
MwoI	GCNNNNNNNGC	5 cut(s)	74, 199, 208, 953, 970
NarI	GGCGCC	1 cut(s)	973
NdeII	GATC	1 cut(s)	781
NlaIII	CATG	4 cut(s)	337, 724, 775, 881
NlaIV	GGNNCC	1 cut(s)	974
PcsI	WCGNNNNNNNCGW	1 cut(s)	843
PfeI	GAWTC	2 cut(s)	407, 930
PkrI	GCNGC	4 cut(s)	67, 195, 465, 966
PleI	GAGTC	3 cut(s)	2, 296, 473
PluTI	GGCGCC	1 cut(s)	976
PpsI	GAGTC	3 cut(s)	2, 296, 473
PshAI	GACNNNNGTC	1 cut(s)	103
PsiI	TTATAA	1 cut(s)	753
Psp1406I	AACGTT	1 cut(s)	846
Psp6I	CCWGG	2 cut(s)	283, 491
PspGI	CCWGG	2 cut(s)	283, 491
PspN4I	GGNNCC	1 cut(s)	974
PstI	CTGCAG	1 cut(s)	465
PvuII	CAGCTG	1 cut(s)	466
RsaI	GTAC	2 cut(s)	457, 645
RsaNI	GTAC	2 cut(s)	456, 644
RseI	CAYNNNNRTG	2 cut(s)	30, 882
SaqAI	TTAA	7 cut(s)	186, 356, 422, 542, 582, 618, 938
SatI	GCNGC	4 cut(s)	66, 194, 464, 965
Sau3AI	GATC	1 cut(s)	781
SchI	GAGTC	3 cut(s)	2, 297, 473
ScrFI	CCNGG	2 cut(s)	285, 493
SduI	GDGCHC	4 cut(s)	37, 184, 283, 889
SfaNI	GCATC	1 cut(s)	956
SfcI	CTRYAG	1 cut(s)	461
SfoI	GGCGCC	1 cut(s)	974
SmiMI	CAYNNNNRTG	2 cut(s)	30, 882
SmlI	CTYRAG	3 cut(s)	521, 707, 830
SmoI	CTYRAG	3 cut(s)	521, 707, 830
SpeI	ACTAGT	1 cut(s)	646
Sse9I	AATT	5 cut(s)	240, 307, 343, 638, 914
SsiI	CCGC	5 cut(s)	66, 489, 536, 956, 964
SspDI	GGCGCC	1 cut(s)	972
SspMI	CTAG	3 cut(s)	57, 90, 647
StyD4I	CCNGG	2 cut(s)	283, 491
StyI	CCWWGG	1 cut(s)	604
TaiI	ACGT	3 cut(s)	103, 700, 849
TaqI	TCGA	1 cut(s)	739
TasI	AATT	5 cut(s)	240, 307, 343, 638, 914
TatI	WGTACW	1 cut(s)	455
TauI	GCSGC	2 cut(s)	68, 967
TfiI	GAWTC	2 cut(s)	407, 930
Tru1I	TTAA	7 cut(s)	186, 356, 422, 542, 582, 618, 938
Tru9I	TTAA	7 cut(s)	186, 356, 422, 542, 582, 618, 938
TscAI	CASTG	2 cut(s)	465, 812
TseI	GCWGC	2 cut(s)	193, 463
TspDTI	ATGAA	5 cut(s)	350, 399, 734, 737, 1025
TspRI	CASTG	2 cut(s)	465, 812
VneI	GTGCAC	1 cut(s)	180
XspI	CTAG	3 cut(s)	57, 90, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.