Rh5BG107000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003885
Physical Location & Seq
Forward (+)
9925434 .. 9927174
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG107000.1

Sequence Viewer

Length: 894 bp
ATGATGGACTCTGCACTTTGTCTCCGTCATGGTTCCCTACAAATTCCTTCCGCCACTAGCCGTGCAGCCGGATTAGCAAGGCCTTATTCCAGTTTCAGACCTTCTTCTCTTTCACTTATTTCAAAGGCTTCCACATACCGCACCCTATCGCGACACACCTTCAGCAGTCCTGTGATATGTGCACTTAACAAGCCCTCGCCACCTTCGCCAAACTACGACAAGGACAATGGTAAAAAAATTGTGATAGTGGTGGGGGGTGCTTCAGTAGTTTTGGTTTGTGTCCTTGGAGTCATCAACTACAACTTCAATTTCAGTCCAACAGCCATTGCAGGGAGCTATAGCAGTCCTGAAGTAGACCGAGCGGGACCACCGGTGTCTAGGCCGAAAGACGTGTTAGATTCAATGTTGAAGGTGAACAAACATTTAGCCACACCCGAGAGTAGAATGAGAATGGTGCTCAAATCGAAACCGCAGCTGTCTATGCCTGCGACACCTTCACCGCAAGATCGTGAAAATCTTAAGATTGCAGTAGCGGAGTTAATCAAGTCCGGAAAGTGCGATGTGGCAGAGAGAAGACTTTATAATTTATACAAAGAAACCGAGAAAAAAGGGTCTATTCCTGCAAATGAAGTGGAGATGGAATTGGTACTAGTTCTCATTTTCCAGGGAAAATACGAAGATGCTTTGAAATGTAGATGTCTCAGTCATGATGCCGAGGTTGGTGGGGATGGTCGAGTTCCATATTACAAGGCTATTATCTACACCATGCTGGGTCAGGATGATAAAGCCGAGATATACTGGCAAAAATTTGTCGAATCCTTTCGGAGTCAACCACGGGTGGAAGACCGGCCTCCTGAGGTTATAAATCCAAAGCAAAAAATAGAGAAACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

32.93

Weight (kDa)

9.36

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 582, 863
AccBSI CCGCTC 1 cut(s) 362
AccI GTMKAC 1 cut(s) 354
AccII CGCG 1 cut(s) 151
AccIII TCCGGA 1 cut(s) 548
AciI CCGC 6 cut(s) 51, 139, 362, 470, 500, 533
AcsI RAATTY 2 cut(s) 42, 806
AcuI CTGAAG 3 cut(s) 145, 246, 369
AfaI GTAC 1 cut(s) 648
AfiI CCNNNNNNNGG 1 cut(s) 330
AflII CTTAAG 1 cut(s) 518
AflIII ACRYGT 1 cut(s) 390
AgeI ACCGGT 1 cut(s) 370
AgsI TTSAA 5 cut(s) 123, 307, 402, 409, 688
AhlI ACTAGT 1 cut(s) 649
AjiI CACGTC 1 cut(s) 391
AjnI CCWGG 1 cut(s) 663
AluBI AGCT 2 cut(s) 336, 475
AluI AGCT 2 cut(s) 336, 475
Alw21I GWGCWC 2 cut(s) 184, 459
Alw26I GTCTC 2 cut(s) 26, 704
Alw44I GTGCAC 1 cut(s) 180
Ama87I CYCGRG 1 cut(s) 434
Aor13HI TCCGGA 1 cut(s) 548
AoxI GGCC 3 cut(s) 80, 380, 848
ApaLI GTGCAC 1 cut(s) 180
ApeKI GCWGC 2 cut(s) 65, 472
ApoI RAATTY 2 cut(s) 42, 806
AsiGI ACCGGT 1 cut(s) 370
Asp700I GAANNNNTTC 1 cut(s) 819
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 2 cut(s) 424, 489
AvaI CYCGRG 1 cut(s) 434
AvaII GGWCC 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 855
BaeGI GKGCMC 1 cut(s) 184
BbsI GAAGAC 2 cut(s) 580, 849
Bbv12I GWGCWC 2 cut(s) 184, 459
BbvI GCAGC 2 cut(s) 77, 484
BccI CCATC 2 cut(s) 631, 722
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 665
BcoDI GTCTC 2 cut(s) 26, 704
BcuI ACTAGT 1 cut(s) 649
BfaI CTAG 3 cut(s) 57, 378, 650
BfmI CTRYAG 1 cut(s) 337
BfrI CTTAAG 1 cut(s) 518
BisI GCNGC 2 cut(s) 66, 473
BlsI GCNGC 2 cut(s) 67, 474
Bme1390I CCNGG 1 cut(s) 665
Bme18I GGWCC 1 cut(s) 365
BmeT110I CYCGRG 1 cut(s) 434
BmgBI CACGTC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 2 cut(s) 34, 366
BmrFI CCNGG 1 cut(s) 665
BmsI GCATC 2 cut(s) 670, 700
BpiI GAAGAC 2 cut(s) 580, 849
BsaJI CCNNGG 4 cut(s) 283, 664, 714, 833
BsaWI WCCGGW 2 cut(s) 370, 548
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 1 cut(s) 330
Bse118I RCCGGY 2 cut(s) 370, 846
Bse1I ACTGG 2 cut(s) 90, 803
Bse21I CCTNAGG 1 cut(s) 855
Bse3DI GCAATG 1 cut(s) 324
BseAI TCCGGA 1 cut(s) 548
BseBI CCWGG 1 cut(s) 665
BseDI CCNNGG 4 cut(s) 283, 664, 714, 833
BseGI GGATG 2 cut(s) 733, 784
BseLI CCNNNNNNNGG 1 cut(s) 330
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 2 cut(s) 715, 846
BseNI ACTGG 2 cut(s) 90, 803
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 2 cut(s) 77, 484
BseYI CCCAGC 1 cut(s) 769
BsgI GTGCAG 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 151
BshFI GGCC 3 cut(s) 82, 382, 850
BshTI ACCGGT 1 cut(s) 370
BsiHKAI GWGCWC 2 cut(s) 184, 459
BsiHKCI CYCGRG 1 cut(s) 434
BsiSI CCGG 4 cut(s) 69, 371, 549, 847
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 1 cut(s) 330
BsmAI GTCTC 2 cut(s) 26, 704
BsmFI GGGAC 1 cut(s) 378
BsnI GGCC 3 cut(s) 82, 382, 850
BsoBI CYCGRG 1 cut(s) 434
Bsp1286I GDGCHC 2 cut(s) 184, 459
Bsp13I TCCGGA 1 cut(s) 548
Bsp143I GATC 1 cut(s) 505
Bsp68I TCGCGA 1 cut(s) 151
BspACI CCGC 6 cut(s) 51, 139, 362, 470, 500, 533
BspANI GGCC 3 cut(s) 82, 382, 850
BspCNI CTCAG 2 cut(s) 714, 847
BspEI TCCGGA 1 cut(s) 548
BspFNI CGCG 1 cut(s) 151
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 2 cut(s) 34, 366
BspTI CTTAAG 1 cut(s) 518
BsrBI CCGCTC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 324
BsrFI RCCGGY 2 cut(s) 370, 846
BsrI ACTGG 2 cut(s) 90, 803
BssAI RCCGGY 2 cut(s) 370, 846
BssECI CCNNGG 4 cut(s) 283, 664, 714, 833
BssMI GATC 1 cut(s) 505
BssT1I CCWWGG 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 665
BstAFI CTTAAG 1 cut(s) 518
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 2 cut(s) 701, 855
BstDSI CCRYGG 1 cut(s) 833
BstF5I GGATG 2 cut(s) 733, 784
BstFNI CGCG 1 cut(s) 151
BstKTI GATC 1 cut(s) 508
BstMAI GTCTC 2 cut(s) 26, 704
BstMBI GATC 1 cut(s) 505
BstMWI GCNNNNNNNGC 3 cut(s) 74, 205, 481
BstNI CCWGG 1 cut(s) 665
BstSCI CCNGG 1 cut(s) 663
BstSFI CTRYAG 1 cut(s) 337
BstSLI GKGCMC 1 cut(s) 184
BstUI CGCG 1 cut(s) 151
BstV1I GCAGC 2 cut(s) 77, 484
BstV2I GAAGAC 2 cut(s) 580, 849
Bsu36I CCTNAGG 1 cut(s) 855
BsuRI GGCC 3 cut(s) 82, 382, 850
BtgI CCRYGG 1 cut(s) 833
BtgZI GCGATG 1 cut(s) 573
BtrI CACGTC 1 cut(s) 391
BtsCI GGATG 2 cut(s) 733, 784
BtuMI TCGCGA 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 486
CciI TCATGA 1 cut(s) 706
Cfr10I RCCGGY 2 cut(s) 370, 846
Cfr13I GGNCC 1 cut(s) 365
Csp6I GTAC 1 cut(s) 647
CspAI ACCGGT 1 cut(s) 370
CspCI CAANNNNNGTGG 2 cut(s) 612, 647
CviAII CATG 3 cut(s) 29, 707, 766
CviQI GTAC 1 cut(s) 647
DdeI CTNAG 2 cut(s) 701, 855
DpnI GATC 1 cut(s) 507
DpnII GATC 1 cut(s) 505
EciI GGCGGA 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 283
Eco147I AGGCCT 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 365
Eco57I CTGAAG 3 cut(s) 145, 246, 369
Eco81I CCTNAGG 1 cut(s) 855
Eco88I CYCGRG 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 663
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 3 cut(s) 32, 710, 769
FaqI GGGAC 1 cut(s) 378
FatI CATG 3 cut(s) 28, 706, 765
FauI CCCGC 1 cut(s) 355
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 2 cut(s) 66, 473
FokI GGATG 2 cut(s) 740, 791
Fsp4HI GCNGC 2 cut(s) 66, 473
FspBI CTAG 3 cut(s) 57, 378, 650
GluI GCNGC 2 cut(s) 66, 473
GsaI CCCAGC 1 cut(s) 773
HaeIII GGCC 3 cut(s) 82, 382, 850
HapII CCGG 4 cut(s) 69, 371, 549, 847
Hin1II CATG 3 cut(s) 32, 710, 769
HincII GTYRAC 1 cut(s) 830
HindII GTYRAC 1 cut(s) 830
HinfI GANTC 5 cut(s) 8, 288, 398, 815, 826
HpaII CCGG 4 cut(s) 69, 371, 549, 847
HphI GGTGA 2 cut(s) 424, 489
Hpy166II GTNNAC 4 cut(s) 182, 355, 415, 830
Hpy188I TCNGA 2 cut(s) 98, 825
Hpy188III TCNNGA 7 cut(s) 150, 347, 509, 549, 707, 776, 854
Hpy8I GTNNAC 4 cut(s) 182, 355, 415, 830
HpyAV CCTTC 6 cut(s) 57, 111, 169, 213, 403, 504
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 6 cut(s) 14, 65, 182, 329, 527, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 205, 481
HpyF3I CTNAG 2 cut(s) 701, 855
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 3 cut(s) 32, 710, 769
Kpn2I TCCGGA 1 cut(s) 548
Kzo9I GATC 1 cut(s) 505
LmnI GCTCC 1 cut(s) 333
Lsp1109I GCAGC 2 cut(s) 77, 484
LweI GCATC 2 cut(s) 670, 700
MaeI CTAG 3 cut(s) 57, 378, 650
MaeII ACGT 1 cut(s) 390
MalI GATC 1 cut(s) 507
MbiI CCGCTC 1 cut(s) 362
MboI GATC 1 cut(s) 505
MboII GAAGA 4 cut(s) 96, 585, 689, 854
MhlI GDGCHC 2 cut(s) 184, 459
MluCI AATT 6 cut(s) 42, 237, 307, 583, 641, 806
MlyI GAGTC 3 cut(s) 2, 297, 835
MmeI TCCRAC 1 cut(s) 341
MnlI CCTC 4 cut(s) 205, 709, 850, 861
MroI TCCGGA 1 cut(s) 548
MroXI GAANNNNTTC 1 cut(s) 819
MseI TTAA 3 cut(s) 186, 519, 539
MspA1I CMGCKG 1 cut(s) 475
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 4 cut(s) 69, 371, 549, 847
MspR9I CCNGG 1 cut(s) 665
MvaI CCWGG 1 cut(s) 665
MvnI CGCG 1 cut(s) 151
MwoI GCNNNNNNNGC 3 cut(s) 74, 205, 481
NdeII GATC 1 cut(s) 505
NlaIII CATG 3 cut(s) 32, 710, 769
NlaIV GGNNCC 2 cut(s) 34, 366
NmeAIII GCCGAG 2 cut(s) 739, 814
NruI TCGCGA 1 cut(s) 151
PagI TCATGA 1 cut(s) 706
PceI AGGCCT 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 819
PfeI GAWTC 2 cut(s) 398, 815
PinAI ACCGGT 1 cut(s) 370
PkrI GCNGC 2 cut(s) 67, 474
PleI GAGTC 3 cut(s) 2, 296, 834
PpsI GAGTC 3 cut(s) 2, 296, 834
PsiI TTATAA 2 cut(s) 582, 863
Psp6I CCWGG 1 cut(s) 663
PspFI CCCAGC 1 cut(s) 769
PspGI CCWGG 1 cut(s) 663
PspN4I GGNNCC 2 cut(s) 34, 366
PspPI GGNCC 1 cut(s) 365
PvuII CAGCTG 1 cut(s) 475
RruI TCGCGA 1 cut(s) 151
RsaI GTAC 1 cut(s) 648
RsaNI GTAC 1 cut(s) 647
SaqAI TTAA 3 cut(s) 186, 519, 539
SatI GCNGC 2 cut(s) 66, 473
Sau3AI GATC 1 cut(s) 505
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 3 cut(s) 2, 297, 835
ScrFI CCNGG 1 cut(s) 665
SduI GDGCHC 2 cut(s) 184, 459
SfaNI GCATC 2 cut(s) 670, 700
SfcI CTRYAG 1 cut(s) 337
SgrAI CRCCGGYG 1 cut(s) 370
SinI GGWCC 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
SpeI ACTAGT 1 cut(s) 649
Sse9I AATT 6 cut(s) 42, 237, 307, 583, 641, 806
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 6 cut(s) 51, 139, 362, 470, 500, 533
SspMI CTAG 3 cut(s) 57, 378, 650
StuI AGGCCT 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 663
StyI CCWWGG 1 cut(s) 283
TaiI ACGT 1 cut(s) 393
TaqI TCGA 3 cut(s) 464, 733, 813
TaqII GACCGA 1 cut(s) 372
TasI AATT 6 cut(s) 42, 237, 307, 583, 641, 806
TfiI GAWTC 2 cut(s) 398, 815
Tru1I TTAA 3 cut(s) 186, 519, 539
Tru9I TTAA 3 cut(s) 186, 519, 539
TseI GCWGC 2 cut(s) 65, 472
TspDTI ATGAA 1 cut(s) 642
TspGWI ACGGA 1 cut(s) 14
Vha464I CTTAAG 1 cut(s) 518
VneI GTGCAC 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 2 cut(s) 42, 806
XmiI GTMKAC 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 819
XspI CTAG 3 cut(s) 57, 378, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.