Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003885

Physical Location & Seq

Genomic Coordinates Forward (+)

9766521 .. 9768694

Gene Structure 2174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG118500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGATGGACTCTGCACTTTTTCTCCATCGTGGTGCTCTCAACATTCCTTCCACCACTAGCCGTGCAGCCGGATTAGCAAGGCCTTATTCTAGTTTCAGACCTTCTTCTCTTTCACTTTTTTCAAAGGCTTCCACATACCCCACCCTATCGCGACACACCTTCAATAGTCCTGTGATATGTGCACTTAACAAGCAGCCCTCGCCACCTTCGCCGAATTACGACAAAGACAATGGTAAAAAAATTGTGATGGTGGGGGGTGCTTCTGAAGTTCTGGCTTGTGCCCCTGGAGTCATCAACTACAACTTCAATTTCAGTCCCACAGCCATTGCCTGCAAGAATAATAGTTCTTCGTCCTCAACTGAAGAAGACCCACAGGTTGTCTTGCCTGCACCGAAAAAAGTGTTAGATTCATTTTTGAAGTTGAATAGACATATAACCACACCCAAGAGTGGATATACACCGCAGCTGTCTATTTTTGACTCTTTTCCGGACATGCCAAGAGAGCACGACTATGACAATCTTGAGATTGCAGTAGCGGATTTAATCAAGTCCGGAATGTGCAGTGAGGCAGAGAGACAACTTATTAATCTATACAACAAAACCTCTAAGAAAAAAGGGCCTCATCAGGCAGAAGATGTGGAGATGGAATTGGTACTAGTTCTCATTTTCCAGGGAAAATACAAAGAGGCTTCGGAACGTGGTTGTCTCAAGTGTGAACCCATGAATAGTTCGAAAGGTCTAGTTCATTTTTACAAGGCTATTATCTACACCATGTTGGGCGATCAGGATGATAGAGCCAAGAAACACTGGGACATATTTTTATTATCCTTTAACAGTCCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

31.11

Weight (kDa)

8.62

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34540 AT2G34540
fragaria_vesca	FvH4_3g05540 FvH4_3g05550
prunus_persica	Prupe.4G080600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014121 RchiOBHm_Chr5g0014151 RchiOBHm_Chr5g0014161
rosa_laevigata	RLG00000032083 RLG00000032086 RLG00000032087 RLG00000032173
rosa_multiflora	Rmu_sc0007767.1_g000023 Rmu_sc0027898.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062440 Rroxscaffold_1G00062450 Rroxscaffold_1G00062490
rosa_rugosa	Rorug05G0015800 Rorug05G0016100 Rorug05G0024500
rosa_samantha	Rh5AG109900 Rh5AG110000 Rh5BG106600 Rh5BG106800 Rh5BG107000 Rh5BG107100 Rh5BG116900 Rh5CG118500 Rh5CG119000 Rh5DG105300 Rh5DG105500 Rh5DG105600
rosa_wichuraiana	Rw5G009600 Rw5G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	151
AccIII	TCCGGA	2 cut(s)	487, 551
AciI	CCGC	2 cut(s)	461, 536
AcuI	CTGAAG	2 cut(s)	285, 381
AfaI	GTAC	1 cut(s)	654
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	5 cut(s)	123, 163, 307, 418, 424
AhlI	ACTAGT	1 cut(s)	655
AjnI	CCWGG	2 cut(s)	283, 669
AluBI	AGCT	1 cut(s)	466
AluI	AGCT	1 cut(s)	466
Alw21I	GWGCWC	3 cut(s)	37, 184, 507
Alw26I	GTCTC	2 cut(s)	568, 710
Alw44I	GTGCAC	1 cut(s)	180
Aor13HI	TCCGGA	2 cut(s)	487, 551
AoxI	GGCC	2 cut(s)	80, 617
ApaLI	GTGCAC	1 cut(s)	180
ApeKI	GCWGC	3 cut(s)	65, 193, 463
AseI	ATTAAT	1 cut(s)	585
AspS9I	GGNCC	1 cut(s)	617
AsuII	TTCGAA	1 cut(s)	731
BaeGI	GKGCMC	2 cut(s)	184, 283
BbsI	GAAGAC	1 cut(s)	372
Bbv12I	GWGCWC	3 cut(s)	37, 184, 507
BbvI	GCAGC	3 cut(s)	77, 205, 475
BccI	CCATC	3 cut(s)	33, 241, 637
BceAI	ACGGC	1 cut(s)	45
BciT130I	CCWGG	2 cut(s)	285, 671
BcoDI	GTCTC	2 cut(s)	568, 710
BcuI	ACTAGT	1 cut(s)	655
BfaI	CTAG	5 cut(s)	57, 90, 656, 740, 844
BisI	GCNGC	3 cut(s)	66, 194, 464
BlsI	GCNGC	3 cut(s)	67, 195, 465
Bme1390I	CCNGG	2 cut(s)	285, 671
BmgT120I	GGNCC	1 cut(s)	617
BmrFI	CCNGG	2 cut(s)	285, 671
BmrI	ACTGGG	1 cut(s)	817
BmuI	ACTGGG	1 cut(s)	817
BpiI	GAAGAC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	731
BpuEI	CTTGAG	2 cut(s)	542, 692
BsaJI	CCNNGG	2 cut(s)	283, 670
BsaWI	WCCGGW	2 cut(s)	487, 551
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	1 cut(s)	812
Bse3DI	GCAATG	1 cut(s)	324
BseAI	TCCGGA	2 cut(s)	487, 551
BseBI	CCWGG	2 cut(s)	285, 671
BseDI	CCNNGG	2 cut(s)	283, 670
BseGI	GGATG	1 cut(s)	793
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMI	GCAATG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	812
BseSI	GKGCMC	2 cut(s)	184, 283
BseXI	GCAGC	3 cut(s)	77, 205, 475
BsgI	GTGCAG	3 cut(s)	84, 372, 580
Bsh1236I	CGCG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	82, 619
BsiHKAI	GWGCWC	3 cut(s)	37, 184, 507
BsiSI	CCGG	3 cut(s)	69, 488, 552
BslFI	GGGAC	2 cut(s)	300, 824
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	2 cut(s)	568, 710
BsmFI	GGGAC	2 cut(s)	300, 824
BsnI	GGCC	2 cut(s)	82, 619
Bsp119I	TTCGAA	1 cut(s)	731
Bsp1286I	GDGCHC	4 cut(s)	37, 184, 283, 507
Bsp13I	TCCGGA	2 cut(s)	487, 551
Bsp143I	GATC	1 cut(s)	781
Bsp68I	TCGCGA	1 cut(s)	151
BspACI	CCGC	2 cut(s)	461, 536
BspANI	GGCC	2 cut(s)	82, 619
BspEI	TCCGGA	2 cut(s)	487, 551
BspFNI	CGCG	1 cut(s)	151
BspT104I	TTCGAA	1 cut(s)	731
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	812
BssECI	CCNNGG	2 cut(s)	283, 670
BssMI	GATC	1 cut(s)	781
Bst2UI	CCWGG	2 cut(s)	285, 671
Bst4CI	ACNGT	1 cut(s)	836
BstBI	TTCGAA	1 cut(s)	731
BstC8I	GCNNGC	2 cut(s)	331, 387
BstDEI	CTNAG	1 cut(s)	606
BstF5I	GGATG	1 cut(s)	793
BstFNI	CGCG	1 cut(s)	151
BstKTI	GATC	1 cut(s)	784
BstMAI	GTCTC	2 cut(s)	568, 710
BstMBI	GATC	1 cut(s)	781
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 199, 208, 502
BstNI	CCWGG	2 cut(s)	285, 671
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	2 cut(s)	283, 669
BstSLI	GKGCMC	2 cut(s)	184, 283
BstUI	CGCG	1 cut(s)	151
BstV1I	GCAGC	3 cut(s)	77, 205, 475
BstV2I	GAAGAC	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	82, 619
BtsCI	GGATG	1 cut(s)	793
BtsI	GCAGTG	1 cut(s)	568
BtsIMutI	CAGTG	2 cut(s)	568, 805
BtuMI	TCGCGA	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	331, 387
Cfr13I	GGNCC	1 cut(s)	617
Csp6I	GTAC	1 cut(s)	653
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviAII	CATG	3 cut(s)	493, 721, 772
CviQI	GTAC	1 cut(s)	653
DdeI	CTNAG	1 cut(s)	606
DpnI	GATC	1 cut(s)	783
DpnII	GATC	1 cut(s)	781
Eco147I	AGGCCT	1 cut(s)	82
Eco57I	CTGAAG	2 cut(s)	285, 381
EcoO109I	RGGNCCY	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	283, 669
FaeI	CATG	3 cut(s)	496, 724, 775
FaqI	GGGAC	2 cut(s)	300, 824
FatI	CATG	3 cut(s)	492, 720, 771
Fnu4HI	GCNGC	3 cut(s)	66, 194, 464
FokI	GGATG	1 cut(s)	800
Fsp4HI	GCNGC	3 cut(s)	66, 194, 464
FspBI	CTAG	5 cut(s)	57, 90, 656, 740, 844
GluI	GCNGC	3 cut(s)	66, 194, 464
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	82, 619
HapII	CCGG	3 cut(s)	69, 488, 552
Hin1II	CATG	3 cut(s)	496, 724, 775
HinfI	GANTC	4 cut(s)	8, 288, 407, 479
HpaII	CCGG	3 cut(s)	69, 488, 552
Hpy166II	GTNNAC	2 cut(s)	182, 716
Hpy188I	TCNGA	3 cut(s)	98, 265, 694
Hpy188III	TCNNGA	5 cut(s)	150, 488, 521, 552, 785
Hpy8I	GTNNAC	2 cut(s)	182, 716
HpyAV	CCTTC	4 cut(s)	57, 111, 169, 216
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	1 cut(s)	697
HpyCH4V	TGCA	7 cut(s)	14, 65, 182, 333, 389, 530, 561
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 199, 208, 502
HpyF3I	CTNAG	1 cut(s)	606
HpySE526I	ACGT	1 cut(s)	697
Hsp92II	CATG	3 cut(s)	496, 724, 775
Kpn2I	TCCGGA	2 cut(s)	487, 551
Kzo9I	GATC	1 cut(s)	781
Lsp1109I	GCAGC	3 cut(s)	77, 205, 475
MaeI	CTAG	5 cut(s)	57, 90, 656, 740, 844
MaeII	ACGT	1 cut(s)	697
MalI	GATC	1 cut(s)	783
MboI	GATC	1 cut(s)	781
MboII	GAAGA	5 cut(s)	96, 339, 374, 377, 644
MhlI	GDGCHC	4 cut(s)	37, 184, 283, 507
MluCI	AATT	4 cut(s)	214, 240, 307, 647
MlyI	GAGTC	3 cut(s)	2, 297, 473
MnlI	CCTC	6 cut(s)	208, 364, 559, 613, 630, 679
MroI	TCCGGA	2 cut(s)	487, 551
MseI	TTAA	4 cut(s)	186, 542, 585, 831
MslI	CAYNNNNRTG	2 cut(s)	30, 510
MspA1I	CMGCKG	1 cut(s)	466
MspI	CCGG	3 cut(s)	69, 488, 552
MspR9I	CCNGG	2 cut(s)	285, 671
MvaI	CCWGG	2 cut(s)	285, 671
MvnI	CGCG	1 cut(s)	151
MwoI	GCNNNNNNNGC	4 cut(s)	74, 199, 208, 502
NdeII	GATC	1 cut(s)	781
NlaIII	CATG	3 cut(s)	496, 724, 775
NruI	TCGCGA	1 cut(s)	151
NspI	RCATGY	1 cut(s)	496
NspV	TTCGAA	1 cut(s)	731
PceI	AGGCCT	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	3 cut(s)	67, 195, 465
PleI	GAGTC	3 cut(s)	2, 296, 473
PpsI	GAGTC	3 cut(s)	2, 296, 473
PshBI	ATTAAT	1 cut(s)	585
Psp6I	CCWGG	2 cut(s)	283, 669
PspGI	CCWGG	2 cut(s)	283, 669
PspPI	GGNCC	1 cut(s)	617
PvuII	CAGCTG	1 cut(s)	466
RruI	TCGCGA	1 cut(s)	151
RsaI	GTAC	1 cut(s)	654
RsaNI	GTAC	1 cut(s)	653
RseI	CAYNNNNRTG	2 cut(s)	30, 510
SaqAI	TTAA	4 cut(s)	186, 542, 585, 831
SatI	GCNGC	3 cut(s)	66, 194, 464
Sau3AI	GATC	1 cut(s)	781
Sau96I	GGNCC	1 cut(s)	617
SchI	GAGTC	3 cut(s)	2, 297, 473
ScrFI	CCNGG	2 cut(s)	285, 671
SduI	GDGCHC	4 cut(s)	37, 184, 283, 507
SetI	ASST	8 cut(s)	103, 161, 208, 378, 468, 605, 700, 739
SfuI	TTCGAA	1 cut(s)	731
SmiMI	CAYNNNNRTG	2 cut(s)	30, 510
SmlI	CTYRAG	2 cut(s)	521, 707
SmoI	CTYRAG	2 cut(s)	521, 707
SpeI	ACTAGT	1 cut(s)	655
Sse9I	AATT	4 cut(s)	214, 240, 307, 647
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	2 cut(s)	461, 536
SspMI	CTAG	5 cut(s)	57, 90, 656, 740, 844
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	2 cut(s)	283, 669
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	1 cut(s)	700
TaqI	TCGA	1 cut(s)	731
TasI	AATT	4 cut(s)	214, 240, 307, 647
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	4 cut(s)	186, 542, 585, 831
Tru9I	TTAA	4 cut(s)	186, 542, 585, 831
TscAI	CASTG	2 cut(s)	568, 812
TseI	GCWGC	3 cut(s)	65, 193, 463
TspDTI	ATGAA	3 cut(s)	399, 734, 737
TspRI	CASTG	2 cut(s)	568, 812
VneI	GTGCAC	1 cut(s)	180
VspI	ATTAAT	1 cut(s)	585
XceI	RCATGY	1 cut(s)	496
XspI	CTAG	5 cut(s)	57, 90, 656, 740, 844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.