Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003885

Physical Location & Seq

Genomic Coordinates Forward (+)

10328328 .. 10330282

Gene Structure 1955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G009600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGATGGACTCTGCACTTTGTCTCCGTAGTGGTGCTCTACACATTCCTTCCACCACTAGCCAAGCAGCCGGATTAGCAAGGCCTTATTCCAGTTTCAGACCTTCTTCTCTTTCACTTTTTTCAAAGGCTTCCACATACCGCACCCTATCGCGACACACCTTCAGTAGGCCTGTGACATGTGCACTTAACAAGCCCTCTCCACCTTCGCCAAACTATGACAGAGACAATGGTAAAAAAATTGTGATAGTAGTGGGAGGTGCTTCTGTAGTTTTGGCTTGTGTCCTTGGAGTCATCAACTACAACTTCAATTTCAGTCCAGCAGCCATTGCAGCCCCTATGGTCGAGTCTAGGCCGAAAGCCGCGTTAGATTCATTGTTGACGGTGAACAAATATTTAGCCACATCCAAGAGTACATGGAGCGTGTTCAGATCGACACCACAGCTGTATATTCCCGAGACACCTACAAACGAGGACTATTCCAATCTTAAGATTGCAGTAGCGGATTTAATCAAGTCCGGAAACTGCGATGAGGCAGAGACAAAACTTAGAAGGTTATACGAAAACATCCAAGGGAGTGAAGTTAAATACAATGTGGAGATGGAATTGGTACTAGTTCTCATTTTCCAGGAAAAATACAAAGAGGCTTTGAAATGTAAATGTCTCAGTGATGCCAAGGTTGATTCGGATGGTCGAGTTTCACTTTACAAGGCTATTATCTACACCATGCTAGATCGGGATCAGGAACCCCCCCGGAAGGAAGCCGAGAAGTACTGGAAACACTTTGTCAAGTCCTTTCAAAGTGAACCAGAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

30.18

Weight (kDa)

8.99

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34540 AT2G34540
fragaria_vesca	FvH4_3g05540 FvH4_3g05550
prunus_persica	Prupe.4G080600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014121 RchiOBHm_Chr5g0014151 RchiOBHm_Chr5g0014161
rosa_laevigata	RLG00000032083 RLG00000032086 RLG00000032087 RLG00000032173
rosa_multiflora	Rmu_sc0007767.1_g000023 Rmu_sc0027898.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062440 Rroxscaffold_1G00062450 Rroxscaffold_1G00062490
rosa_rugosa	Rorug05G0015800 Rorug05G0016100 Rorug05G0024500
rosa_samantha	Rh5AG109900 Rh5AG110000 Rh5BG106600 Rh5BG106800 Rh5BG107000 Rh5BG107100 Rh5BG116900 Rh5CG118500 Rh5CG119000 Rh5DG105300 Rh5DG105500 Rh5DG105600
rosa_wichuraiana	Rw5G009600 Rw5G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	151, 362
AccIII	TCCGGA	1 cut(s)	515
AciI	CCGC	3 cut(s)	139, 360, 500
AclWI	GGATC	1 cut(s)	744
AcuI	CTGAAG	1 cut(s)	145
AfaI	GTAC	3 cut(s)	412, 609, 770
AfiI	CCNNNNNNNGG	2 cut(s)	165, 754
AflII	CTTAAG	1 cut(s)	485
AflIII	ACRYGT	1 cut(s)	176
AgsI	TTSAA	4 cut(s)	123, 307, 649, 797
AhlI	ACTAGT	1 cut(s)	610
AjnI	CCWGG	1 cut(s)	624
AluBI	AGCT	1 cut(s)	442
AluI	AGCT	1 cut(s)	442
Alw21I	GWGCWC	2 cut(s)	37, 184
Alw26I	GTCTC	5 cut(s)	26, 216, 449, 530, 665
Alw44I	GTGCAC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	744
Ama87I	CYCGRG	1 cut(s)	452
Aor13HI	TCCGGA	1 cut(s)	515
AoxI	GGCC	3 cut(s)	80, 167, 350
ApaLI	GTGCAC	1 cut(s)	180
ApeKI	GCWGC	3 cut(s)	65, 320, 329
AsuC2I	CCSGG	1 cut(s)	751
AsuHPI	GGTGA	1 cut(s)	394
AvaI	CYCGRG	1 cut(s)	452
BaeGI	GKGCMC	1 cut(s)	184
Bbv12I	GWGCWC	2 cut(s)	37, 184
BbvI	GCAGC	3 cut(s)	77, 332, 341
BccI	CCATC	2 cut(s)	592, 680
BciT130I	CCWGG	1 cut(s)	626
BcnI	CCSGG	1 cut(s)	751
BcoDI	GTCTC	5 cut(s)	26, 216, 449, 530, 665
BcuI	ACTAGT	1 cut(s)	610
BfaI	CTAG	4 cut(s)	57, 348, 611, 728
BfmI	CTRYAG	1 cut(s)	264
BfrI	CTTAAG	1 cut(s)	485
BisI	GCNGC	4 cut(s)	66, 321, 330, 360
BlsI	GCNGC	4 cut(s)	67, 322, 331, 361
BmcAI	AGTACT	1 cut(s)	770
Bme1390I	CCNGG	2 cut(s)	626, 751
BmeT110I	CYCGRG	1 cut(s)	452
BmiI	GGNNCC	1 cut(s)	744
BmrFI	CCNGG	2 cut(s)	626, 751
BmsI	GCATC	1 cut(s)	658
BpuMI	CCSGG	1 cut(s)	751
BsaBI	GATNNNNATC	1 cut(s)	735
BsaJI	CCNNGG	4 cut(s)	283, 568, 672, 749
BsaWI	WCCGGW	1 cut(s)	515
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 754
Bse1I	ACTGG	2 cut(s)	90, 776
Bse3DI	GCAATG	1 cut(s)	324
Bse8I	GATNNNNATC	1 cut(s)	735
BseAI	TCCGGA	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	626
BseDI	CCNNGG	4 cut(s)	283, 568, 672, 749
BseGI	GGATG	3 cut(s)	401, 564, 691
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	2 cut(s)	165, 754
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	676
BseNI	ACTGG	2 cut(s)	90, 776
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	3 cut(s)	77, 332, 341
Bsh1236I	CGCG	2 cut(s)	151, 362
BshFI	GGCC	3 cut(s)	82, 169, 352
BsiHKAI	GWGCWC	2 cut(s)	37, 184
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	3 cut(s)	69, 516, 751
BslI	CCNNNNNNNGG	2 cut(s)	165, 754
BsmAI	GTCTC	5 cut(s)	26, 216, 449, 530, 665
BsnI	GGCC	3 cut(s)	82, 169, 352
BsoBI	CYCGRG	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	37, 184
Bsp13I	TCCGGA	1 cut(s)	515
Bsp143I	GATC	3 cut(s)	428, 730, 736
Bsp68I	TCGCGA	1 cut(s)	151
BspACI	CCGC	3 cut(s)	139, 360, 500
BspANI	GGCC	3 cut(s)	82, 169, 352
BspCNI	CTCAG	1 cut(s)	675
BspEI	TCCGGA	1 cut(s)	515
BspFNI	CGCG	2 cut(s)	151, 362
BspLI	GGNNCC	1 cut(s)	744
BspPI	GGATC	1 cut(s)	744
BspTI	CTTAAG	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	90, 776
BssECI	CCNNGG	4 cut(s)	283, 568, 672, 749
BssMI	GATC	3 cut(s)	428, 730, 736
BssT1I	CCWWGG	3 cut(s)	283, 568, 672
Bst2UI	CCWGG	1 cut(s)	626
Bst4CI	ACNGT	1 cut(s)	382
BstAFI	CTTAAG	1 cut(s)	485
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstDEI	CTNAG	2 cut(s)	545, 662
BstENI	CCTNNNNNAGG	1 cut(s)	163
BstF5I	GGATG	3 cut(s)	401, 564, 691
BstFNI	CGCG	2 cut(s)	151, 362
BstKTI	GATC	3 cut(s)	431, 733, 739
BstMAI	GTCTC	5 cut(s)	26, 216, 449, 530, 665
BstMBI	GATC	3 cut(s)	428, 730, 736
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 326, 329
BstNI	CCWGG	1 cut(s)	626
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	624, 749
BstSFI	CTRYAG	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	184
BstUI	CGCG	2 cut(s)	151, 362
BstV1I	GCAGC	3 cut(s)	77, 332, 341
BsuRI	GGCC	3 cut(s)	82, 169, 352
BtgZI	GCGATG	1 cut(s)	540
BtsCI	GGATG	3 cut(s)	401, 564, 691
BtsIMutI	CAGTG	1 cut(s)	670
BtuMI	TCGCGA	1 cut(s)	151
Csp6I	GTAC	3 cut(s)	411, 608, 769
CviAII	CATG	3 cut(s)	177, 414, 724
CviQI	GTAC	3 cut(s)	411, 608, 769
DdeI	CTNAG	2 cut(s)	545, 662
DpnI	GATC	3 cut(s)	430, 732, 738
DpnII	GATC	3 cut(s)	428, 730, 736
Eco130I	CCWWGG	3 cut(s)	283, 568, 672
Eco147I	AGGCCT	2 cut(s)	82, 169
Eco57I	CTGAAG	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	452
EcoNI	CCTNNNNNAGG	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	624
EcoT14I	CCWWGG	3 cut(s)	283, 568, 672
ErhI	CCWWGG	3 cut(s)	283, 568, 672
FaeI	CATG	3 cut(s)	180, 417, 727
FaiI	YATR	9 cut(s)	136, 178, 216, 338, 415, 447, 556, 725, 814
FatI	CATG	3 cut(s)	176, 413, 723
Fnu4HI	GCNGC	4 cut(s)	66, 321, 330, 360
FokI	GGATG	3 cut(s)	388, 551, 698
Fsp4HI	GCNGC	4 cut(s)	66, 321, 330, 360
FspBI	CTAG	4 cut(s)	57, 348, 611, 728
GluI	GCNGC	4 cut(s)	66, 321, 330, 360
HaeIII	GGCC	3 cut(s)	82, 169, 352
HapII	CCGG	3 cut(s)	69, 516, 751
Hin1II	CATG	3 cut(s)	180, 417, 727
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	5 cut(s)	8, 288, 344, 368, 680
HpaII	CCGG	3 cut(s)	69, 516, 751
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	4 cut(s)	182, 378, 385, 803
Hpy188I	TCNGA	3 cut(s)	98, 428, 685
Hpy188III	TCNNGA	5 cut(s)	150, 452, 516, 734, 740
Hpy8I	GTNNAC	4 cut(s)	182, 378, 385, 803
HpyAV	CCTTC	6 cut(s)	57, 111, 169, 213, 543, 748
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4V	TGCA	4 cut(s)	14, 182, 329, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 326, 329
HpyF3I	CTNAG	2 cut(s)	545, 662
Hsp92II	CATG	3 cut(s)	180, 417, 727
Kpn2I	TCCGGA	1 cut(s)	515
Kzo9I	GATC	3 cut(s)	428, 730, 736
LmnI	GCTCC	1 cut(s)	417
Lsp1109I	GCAGC	3 cut(s)	77, 332, 341
LweI	GCATC	1 cut(s)	658
MaeI	CTAG	4 cut(s)	57, 348, 611, 728
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	3 cut(s)	430, 732, 738
MboI	GATC	3 cut(s)	428, 730, 736
MboII	GAAGA	1 cut(s)	96
MhlI	GDGCHC	2 cut(s)	37, 184
MluCI	AATT	3 cut(s)	237, 307, 602
MlyI	GAGTC	3 cut(s)	2, 297, 353
MnlI	CCTC	5 cut(s)	205, 248, 463, 523, 634
MroI	TCCGGA	1 cut(s)	515
MseI	TTAA	4 cut(s)	186, 486, 506, 582
MspA1I	CMGCKG	1 cut(s)	442
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	3 cut(s)	69, 516, 751
MspR9I	CCNGG	2 cut(s)	626, 751
MvaI	CCWGG	1 cut(s)	626
MvnI	CGCG	2 cut(s)	151, 362
MwoI	GCNNNNNNNGC	3 cut(s)	74, 326, 329
NciI	CCSGG	1 cut(s)	751
NdeII	GATC	3 cut(s)	428, 730, 736
NlaIII	CATG	3 cut(s)	180, 417, 727
NlaIV	GGNNCC	1 cut(s)	744
NmeAIII	GCCGAG	1 cut(s)	787
NmuCI	GTSAC	1 cut(s)	172
NruI	TCGCGA	1 cut(s)	151
NspI	RCATGY	1 cut(s)	180
PceI	AGGCCT	2 cut(s)	82, 169
PciI	ACATGT	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	368, 680
PfoI	TCCNGGA	1 cut(s)	624
PkrI	GCNGC	4 cut(s)	67, 322, 331, 361
PleI	GAGTC	3 cut(s)	2, 296, 352
PpsI	GAGTC	3 cut(s)	2, 296, 352
PscI	ACATGT	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	624
PspGI	CCWGG	1 cut(s)	624
PspN4I	GGNNCC	1 cut(s)	744
PvuII	CAGCTG	1 cut(s)	442
RruI	TCGCGA	1 cut(s)	151
RsaI	GTAC	3 cut(s)	412, 609, 770
RsaNI	GTAC	3 cut(s)	411, 608, 769
SaqAI	TTAA	4 cut(s)	186, 486, 506, 582
SatI	GCNGC	4 cut(s)	66, 321, 330, 360
Sau3AI	GATC	3 cut(s)	428, 730, 736
ScaI	AGTACT	1 cut(s)	770
SchI	GAGTC	3 cut(s)	2, 297, 353
ScrFI	CCNGG	2 cut(s)	626, 751
SduI	GDGCHC	2 cut(s)	37, 184
SetI	ASST	8 cut(s)	103, 161, 205, 259, 444, 463, 554, 678
SfaNI	GCATC	1 cut(s)	658
SfcI	CTRYAG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
SpeI	ACTAGT	1 cut(s)	610
Sse9I	AATT	3 cut(s)	237, 307, 602
SseBI	AGGCCT	2 cut(s)	82, 169
SsiI	CCGC	3 cut(s)	139, 360, 500
SspI	AATATT	1 cut(s)	392
SspMI	CTAG	4 cut(s)	57, 348, 611, 728
StuI	AGGCCT	2 cut(s)	82, 169
StyD4I	CCNGG	2 cut(s)	624, 749
StyI	CCWWGG	3 cut(s)	283, 568, 672
TaaI	ACNGT	1 cut(s)	382
TaqI	TCGA	3 cut(s)	342, 431, 691
TasI	AATT	3 cut(s)	237, 307, 602
TatI	WGTACW	2 cut(s)	410, 768
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	2 cut(s)	368, 680
Tru1I	TTAA	4 cut(s)	186, 486, 506, 582
Tru9I	TTAA	4 cut(s)	186, 486, 506, 582
TscAI	CASTG	1 cut(s)	670
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	3 cut(s)	65, 320, 329
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	360
TspGWI	ACGGA	1 cut(s)	14
TspRI	CASTG	1 cut(s)	670
Vha464I	CTTAAG	1 cut(s)	485
VneI	GTGCAC	1 cut(s)	180
XagI	CCTNNNNNAGG	1 cut(s)	163
XceI	RCATGY	1 cut(s)	180
XspI	CTAG	4 cut(s)	57, 348, 611, 728
ZrmI	AGTACT	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.