Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003885

Physical Location & Seq

Genomic Coordinates Forward (+)

3904499 .. 3907067

Gene Structure 2569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G080600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGATTCTGCACTGTGTCTCCAATATGGTGCTCTATGTGTGCCTTCCCCCATGAGAGTGACTAGGGTGCCCAGGCTCCTTCCCAATTTCAACAACCCTTCTCCTCTTTCACTTTCTTCCTTGTGTTCCACACACCATGCCGTGTCGGGGCATGCCTTCAGCCCTGTGATTTCTGCTCTTAACAAGCCCTCAACACCTTCAACAAATGACAAAGATGATAAAAAGTTAATTGTGAGAGGCATAGGCGGTGCCTCTGTGGTTTTGGCCTGTGTCCTTGGCATCATGAATTGCAACTACAAGTTCACCCCAAGAGCCATTGCAGGTGTTAGGGACCCGTATCAGACAAGTCGCTCTTCTGTAAAGCAAGACATATTGTATCCGAAAAGCGCCAAGGACGTGTTACAATCCTTGTTGATGGTGAATGAGAACGTTGCCTCATCTAAAACCTCGATTCTCCCAAATTTTAAAAATCTCAAGTCGCCTCCGGAGCCTTCCATAAAAGATTGTGAAGATCTTACGATTCAAGCAGCAGGGCTGATCAAAGATGGAAAGGGTGATAGGGCAGAAAGACAACTTGAAGATATATACAATAACATGGTGAAGGGAGGAAAAACGGAGTCTGCATACAATGTGCAGATGGCACTGGTAGCAATTCTCATTTTCCAGGGGAAGTACCAAGAAGCTTTGAAATGGATTTGTCTCAACAAGGACCACGCTTTTCCATCGGATGGTCGGGTTCATCTATATAAGGCAATTATATATACTATGTTGGAAGAAAATAAAGAAGCCAAGGAATACTGGGAAACATTCATCGGCTCTCTTGACAATGAGGGTTTGCCAAATCCAATGTCATCGCCTTCACATGGGTCTAAGCATAAGCAGCACAGCGGTCGGATCAAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

33.07

Weight (kDa)

9.03

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34540 AT2G34540
fragaria_vesca	FvH4_3g05540 FvH4_3g05550
prunus_persica	Prupe.4G080600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014121 RchiOBHm_Chr5g0014151 RchiOBHm_Chr5g0014161
rosa_laevigata	RLG00000032083 RLG00000032086 RLG00000032087 RLG00000032173
rosa_multiflora	Rmu_sc0007767.1_g000023 Rmu_sc0027898.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062440 Rroxscaffold_1G00062450 Rroxscaffold_1G00062490
rosa_rugosa	Rorug05G0015800 Rorug05G0016100 Rorug05G0024500
rosa_samantha	Rh5AG109900 Rh5AG110000 Rh5BG106600 Rh5BG106800 Rh5BG107000 Rh5BG107100 Rh5BG116900 Rh5CG118500 Rh5CG119000 Rh5DG105300 Rh5DG105500 Rh5DG105600
rosa_wichuraiana	Rw5G009600 Rw5G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	311
AccB1I	GGYRCC	2 cut(s)	67, 248
AccB7I	CCANNNNNTGG	1 cut(s)	728
AccIII	TCCGGA	1 cut(s)	484
AciI	CCGC	2 cut(s)	246, 888
AclI	AACGTT	1 cut(s)	429
AclWI	GGATC	1 cut(s)	902
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	1 cut(s)	142
AfaI	GTAC	1 cut(s)	674
AfiI	CCNNNNNNNGG	3 cut(s)	147, 728, 863
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	5 cut(s)	91, 201, 524, 578, 688
AjiI	CACGTC	1 cut(s)	397
AjnI	CCWGG	2 cut(s)	71, 663
AluBI	AGCT	1 cut(s)	683
AluI	AGCT	1 cut(s)	683
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	2 cut(s)	23, 704
AlwI	GGATC	1 cut(s)	902
Aor13HI	TCCGGA	1 cut(s)	484
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	527, 880
ApoI	RAATTY	1 cut(s)	460
ArsI	GACNNNNNNTTYG	2 cut(s)	833, 865
AspLEI	GCGC	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	331, 709
AsuHPI	GGTGA	4 cut(s)	295, 430, 566, 610
AvaII	GGWCC	2 cut(s)	331, 709
BaeGI	GKGCMC	1 cut(s)	72
BanI	GGYRCC	2 cut(s)	67, 248
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	2 cut(s)	539, 892
BccI	CCATC	5 cut(s)	409, 539, 631, 722, 730
BceAI	ACGGC	1 cut(s)	125
BcgI	CGANNNNNNTGC	2 cut(s)	872, 906
BciT130I	CCWGG	2 cut(s)	73, 665
BciVI	GTATCC	1 cut(s)	387
BclI	TGATCA	1 cut(s)	537
BcoDI	GTCTC	2 cut(s)	23, 704
BfaI	CTAG	1 cut(s)	63
BfoI	RGCGCY	1 cut(s)	390
BfuAI	ACCTGC	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	387
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	2 cut(s)	528, 881
BlsI	GCNGC	2 cut(s)	529, 882
Bme1390I	CCNGG	2 cut(s)	73, 665
Bme18I	GGWCC	2 cut(s)	331, 709
BmgBI	CACGTC	1 cut(s)	397
BmgT120I	GGNCC	2 cut(s)	331, 709
BmiI	GGNNCC	6 cut(s)	69, 77, 250, 332, 333, 489
BmrFI	CCNGG	2 cut(s)	73, 665
BmrI	ACTGGG	1 cut(s)	808
BmsI	GCATC	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	808
BpuEI	CTTGAG	1 cut(s)	458
BsaJI	CCNNGG	5 cut(s)	71, 274, 390, 664, 789
BsaWI	WCCGGW	1 cut(s)	484
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 728, 863
Bse1I	ACTGG	2 cut(s)	648, 803
Bse3DI	GCAATG	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	484
BseBI	CCWGG	2 cut(s)	73, 665
BseDI	CCNNGG	5 cut(s)	71, 274, 390, 664, 789
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	3 cut(s)	147, 728, 863
BseMI	GCAATG	1 cut(s)	315
BseNI	ACTGG	2 cut(s)	648, 803
BseRI	GAGGAG	1 cut(s)	93
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	539, 892
BsgI	GTGCAG	1 cut(s)	653
Bsh1285I	CGRYCG	1 cut(s)	892
BshFI	GGCC	1 cut(s)	266
BshNI	GGYRCC	2 cut(s)	67, 248
BsiEI	CGRYCG	1 cut(s)	892
BsiHKAI	GWGCWC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	485
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	3 cut(s)	147, 728, 863
BsmAI	GTCTC	2 cut(s)	23, 704
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	34, 72
Bsp13I	TCCGGA	1 cut(s)	484
Bsp143I	GATC	3 cut(s)	511, 537, 894
BspACI	CCGC	2 cut(s)	246, 888
BspANI	GGCC	1 cut(s)	266
BspEI	TCCGGA	1 cut(s)	484
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	6 cut(s)	69, 77, 250, 332, 333, 489
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	1 cut(s)	902
BspQI	GCTCTTC	1 cut(s)	358
BspT107I	GGYRCC	2 cut(s)	67, 248
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	2 cut(s)	648, 803
BssECI	CCNNGG	5 cut(s)	71, 274, 390, 664, 789
BssMI	GATC	3 cut(s)	511, 537, 894
BssT1I	CCWWGG	3 cut(s)	274, 390, 789
Bst2UI	CCWGG	2 cut(s)	73, 665
Bst4CI	ACNGT	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	870
BstF5I	GGATG	1 cut(s)	733
BstH2I	RGCGCY	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	3 cut(s)	514, 540, 897
BstMAI	GTCTC	2 cut(s)	23, 704
BstMBI	GATC	3 cut(s)	511, 537, 894
BstMCI	CGRYCG	1 cut(s)	892
BstMWI	GCNNNNNNNGC	3 cut(s)	487, 647, 880
BstNI	CCWGG	2 cut(s)	73, 665
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	2 cut(s)	71, 663
BstSLI	GKGCMC	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	539, 892
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuI	GTATCC	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	266
BtgZI	GCGATG	1 cut(s)	837
BtrI	CACGTC	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	733
BtsIMutI	CAGTG	2 cut(s)	11, 641
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	153
CciI	TCATGA	1 cut(s)	282
CfoI	GCGC	1 cut(s)	389
Cfr13I	GGNCC	2 cut(s)	331, 709
Csp6I	GTAC	1 cut(s)	673
CviAII	CATG	6 cut(s)	52, 137, 152, 283, 595, 863
CviQI	GTAC	1 cut(s)	673
DdeI	CTNAG	1 cut(s)	870
DpnI	GATC	3 cut(s)	513, 539, 896
DpnII	GATC	3 cut(s)	511, 537, 894
DraI	TTTAAA	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco130I	CCWWGG	3 cut(s)	274, 390, 789
Eco47I	GGWCC	2 cut(s)	331, 709
Eco57I	CTGAAG	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	71, 663
EcoT14I	CCWWGG	3 cut(s)	274, 390, 789
ErhI	CCWWGG	3 cut(s)	274, 390, 789
FaeI	CATG	6 cut(s)	55, 140, 155, 286, 598, 866
FalI	AAGNNNNNCTT	2 cut(s)	337, 369
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	6 cut(s)	51, 136, 151, 282, 594, 862
FbaI	TGATCA	1 cut(s)	537
Fnu4HI	GCNGC	2 cut(s)	528, 881
FokI	GGATG	1 cut(s)	740
Fsp4HI	GCNGC	2 cut(s)	528, 881
FspBI	CTAG	1 cut(s)	63
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	2 cut(s)	528, 881
HaeII	RGCGCY	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	485
HhaI	GCGC	1 cut(s)	389
Hin1II	CATG	6 cut(s)	55, 140, 155, 286, 598, 866
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HindIII	AAGCTT	1 cut(s)	681
HinfI	GANTC	4 cut(s)	5, 451, 520, 617
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	4 cut(s)	295, 430, 566, 610
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	4 cut(s)	342, 381, 727, 894
Hpy188III	TCNNGA	4 cut(s)	283, 485, 821, 898
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	8 cut(s)	54, 89, 108, 166, 207, 501, 595, 867
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4IV	ACGT	2 cut(s)	396, 429
HpyCH4V	TGCA	5 cut(s)	11, 291, 320, 623, 634
HpyF10VI	GCNNNNNNNGC	3 cut(s)	487, 647, 880
HpyF3I	CTNAG	1 cut(s)	870
HpySE526I	ACGT	2 cut(s)	396, 429
Hsp92II	CATG	6 cut(s)	55, 140, 155, 286, 598, 866
HspAI	GCGC	1 cut(s)	387
KflI	GGGWCCC	1 cut(s)	331
Kpn2I	TCCGGA	1 cut(s)	484
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	3 cut(s)	511, 537, 894
LguI	GCTCTTC	1 cut(s)	358
LmnI	GCTCC	2 cut(s)	81, 487
Lsp1109I	GCAGC	2 cut(s)	539, 892
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	2 cut(s)	396, 429
MaeIII	GTNAC	2 cut(s)	58, 399
MalI	GATC	3 cut(s)	513, 539, 896
MboI	GATC	3 cut(s)	511, 537, 894
MboII	GAAGA	5 cut(s)	108, 345, 521, 590, 785
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	2 cut(s)	34, 72
MluCI	AATT	6 cut(s)	85, 228, 286, 460, 651, 753
MlyI	GAGTC	1 cut(s)	626
MmeI	TCCRAC	2 cut(s)	750, 872
MnlI	CCTC	9 cut(s)	114, 199, 230, 262, 445, 457, 492, 599, 823
MroI	TCCGGA	1 cut(s)	484
MseI	TTAA	3 cut(s)	180, 227, 465
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	888
MspI	CCGG	1 cut(s)	485
MspR9I	CCNGG	2 cut(s)	73, 665
MvaI	CCWGG	2 cut(s)	73, 665
MwoI	GCNNNNNNNGC	3 cut(s)	487, 647, 880
NdeII	GATC	3 cut(s)	511, 537, 894
NlaIII	CATG	6 cut(s)	55, 140, 155, 286, 598, 866
NlaIV	GGNNCC	6 cut(s)	69, 77, 250, 332, 333, 489
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	155
PaeI	GCATGC	1 cut(s)	155
PagI	TCATGA	1 cut(s)	282
PaqCI	CACCTGC	1 cut(s)	311
PciSI	GCTCTTC	1 cut(s)	358
PfeI	GAWTC	3 cut(s)	5, 451, 520
PflMI	CCANNNNNTGG	1 cut(s)	728
PkrI	GCNGC	2 cut(s)	529, 882
PleI	GAGTC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	625
PpuMI	RGGWCCY	1 cut(s)	331
Psp1406I	AACGTT	1 cut(s)	429
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	2 cut(s)	71, 663
PspGI	CCWGG	2 cut(s)	71, 663
PspN4I	GGNNCC	6 cut(s)	69, 77, 250, 332, 333, 489
PspPI	GGNCC	2 cut(s)	331, 709
PspPPI	RGGWCCY	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	1 cut(s)	674
RsaNI	GTAC	1 cut(s)	673
RseI	CAYNNNNRTG	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	358
SaqAI	TTAA	3 cut(s)	180, 227, 465
SatI	GCNGC	2 cut(s)	528, 881
Sau3AI	GATC	3 cut(s)	511, 537, 894
Sau96I	GGNCC	2 cut(s)	331, 709
SchI	GAGTC	1 cut(s)	626
ScrFI	CCNGG	2 cut(s)	73, 665
SduI	GDGCHC	2 cut(s)	34, 72
SetI	ASST	6 cut(s)	199, 325, 399, 432, 449, 685
SfaNI	GCATC	1 cut(s)	288
SinI	GGWCC	2 cut(s)	331, 709
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
SphI	GCATGC	1 cut(s)	155
Sse9I	AATT	6 cut(s)	85, 228, 286, 460, 651, 753
SsiI	CCGC	2 cut(s)	246, 888
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	71, 663
StyI	CCWWGG	3 cut(s)	274, 390, 789
TaaI	ACNGT	1 cut(s)	15
TaiI	ACGT	2 cut(s)	399, 432
TaqI	TCGA	1 cut(s)	449
TasI	AATT	6 cut(s)	85, 228, 286, 460, 651, 753
TfiI	GAWTC	3 cut(s)	5, 451, 520
Tru1I	TTAA	3 cut(s)	180, 227, 465
Tru9I	TTAA	3 cut(s)	180, 227, 465
TscAI	CASTG	2 cut(s)	18, 648
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	2 cut(s)	527, 880
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	3 cut(s)	299, 728, 799
TspGWI	ACGGA	1 cut(s)	629
TspRI	CASTG	2 cut(s)	18, 648
Van91I	CCANNNNNTGG	1 cut(s)	728
VpaK11BI	GGWCC	2 cut(s)	331, 709
XapI	RAATTY	1 cut(s)	460
XceI	RCATGY	1 cut(s)	155
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.