Rh5CG119000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003885
Physical Location & Seq
Forward (+)
9805968 .. 9811496
5529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG119000.1

Sequence Viewer

Length: 849 bp
ATGGACGCTGCACTTTGTCTCCATAGTGGTGCTCTACACATTCCTTCCACCACTAGCCAAGCAGCCGGATTAGCAAGGCCTTATTCCAGTTTCAGACCTTCTTCTCTTTCACTTTTTTCAAAGGCTTCCACATACCGCACCCTATCGCGACACACCTTCAGTAGGTCTGTGACATGTGCACTTAACAAGCCCTCTCCACCTTCGCCAAACTACGACAGAGACAATGGTAAAAAAATTGTGATAGTAGTGGGAGGTGCTTCTGTAGTTTTGGCTTGTGTCCTTGGAGTCATCAACTACAACTTCAATTTCAGTCCCGCAGCCATTGCAGCCCCTATAGTCGTGTCTAGGCCGAAAGCCGCGTTAGATTCATTGTTGACGGTGAACAAACATTTAGCCACATCCAAGAGTACATGGAGCGTGTTCAGATCGACACCACAGCTGTATATTCCCGAGACACCTACAAACGAGGACTATTACAATCTTAAGGTTGCAGTAGCGGATTTAATCAAGTCCGGAAACTGCGATGAGGCAGAGACAAAACTTAGAAGGTTATACGAAAACATCCAAGGGAGTGAAGTTAAATACAATGTGGAGATGGAATTGGTACTAGTTCTCATTTTCCAGGGAAAATACGAAGAGGCTTTGGAACGTGGTTGTCTCAGTGGTGGTCCCATGGTTGAGTCGGATGGTCGAGTTCATTTTTACAAGGCTATTATATACACCATGCTGGGTCGGGATGATGAAGCCAAGACATCCTGGAATAGATTTTTGGAATCCTATTCCAATCCACTATCGCAGCTAGACTACTCTGAGGTTGTGACCCCAAAGTCTCGAAGACCCCCACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

31.12

Weight (kDa)

8.98

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 826
AccII CGCG 2 cut(s) 148, 359
AccIII TCCGGA 1 cut(s) 512
AciI CCGC 4 cut(s) 136, 315, 357, 497
AcuI CTGAAG 1 cut(s) 142
AfaI GTAC 2 cut(s) 409, 606
AfiI CCNNNNNNNGG 1 cut(s) 162
AflII CTTAAG 1 cut(s) 482
AflIII ACRYGT 1 cut(s) 173
AgsI TTSAA 2 cut(s) 120, 304
AhlI ACTAGT 1 cut(s) 607
AjnI CCWGG 2 cut(s) 621, 755
AjuI GAANNNNNNNTTGG 2 cut(s) 752, 784
AluBI AGCT 2 cut(s) 439, 799
AluI AGCT 2 cut(s) 439, 799
Alw21I GWGCWC 2 cut(s) 34, 181
Alw26I GTCTC 6 cut(s) 23, 213, 446, 527, 662, 834
Alw44I GTGCAC 1 cut(s) 177
Ama87I CYCGRG 1 cut(s) 449
Aor13HI TCCGGA 1 cut(s) 512
AoxI GGCC 2 cut(s) 77, 347
ApaLI GTGCAC 1 cut(s) 177
ApeKI GCWGC 5 cut(s) 8, 62, 317, 326, 796
AspS9I GGNCC 1 cut(s) 668
AsuHPI GGTGA 1 cut(s) 391
AvaI CYCGRG 1 cut(s) 449
AvaII GGWCC 1 cut(s) 668
BaeGI GKGCMC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 841
Bbv12I GWGCWC 2 cut(s) 34, 181
BbvI GCAGC 4 cut(s) 74, 329, 338, 808
BccI CCATC 2 cut(s) 589, 680
BciT130I CCWGG 2 cut(s) 623, 757
BcoDI GTCTC 6 cut(s) 23, 213, 446, 527, 662, 834
BcuI ACTAGT 1 cut(s) 607
BfaI CTAG 4 cut(s) 54, 345, 608, 800
BfmI CTRYAG 2 cut(s) 261, 333
BfrI CTTAAG 1 cut(s) 482
BisI GCNGC 6 cut(s) 9, 63, 318, 327, 357, 797
BlsI GCNGC 6 cut(s) 10, 64, 319, 328, 358, 798
Bme1390I CCNGG 2 cut(s) 623, 757
Bme18I GGWCC 1 cut(s) 668
BmeT110I CYCGRG 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 668
BmiI GGNNCC 1 cut(s) 670
BmrFI CCNGG 2 cut(s) 623, 757
BpiI GAAGAC 1 cut(s) 841
BsaJI CCNNGG 4 cut(s) 280, 565, 622, 672
BsaWI WCCGGW 1 cut(s) 512
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 321
BseAI TCCGGA 1 cut(s) 512
BseBI CCWGG 2 cut(s) 623, 757
BseDI CCNNGG 4 cut(s) 280, 565, 622, 672
BseGI GGATG 5 cut(s) 398, 561, 691, 742, 752
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 673, 801
BseNI ACTGG 1 cut(s) 87
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 4 cut(s) 74, 329, 338, 808
BseYI CCCAGC 1 cut(s) 727
Bsh1236I CGCG 2 cut(s) 148, 359
BshFI GGCC 2 cut(s) 79, 349
BsiHKAI GWGCWC 2 cut(s) 34, 181
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 2 cut(s) 66, 513
BslFI GGGAC 2 cut(s) 297, 654
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 6 cut(s) 23, 213, 446, 527, 662, 834
BsmFI GGGAC 2 cut(s) 297, 654
BsnI GGCC 2 cut(s) 79, 349
BsoBI CYCGRG 1 cut(s) 449
Bsp1286I GDGCHC 2 cut(s) 34, 181
Bsp13I TCCGGA 1 cut(s) 512
Bsp143I GATC 1 cut(s) 425
Bsp19I CCATGG 1 cut(s) 672
Bsp68I TCGCGA 1 cut(s) 148
BspACI CCGC 4 cut(s) 136, 315, 357, 497
BspANI GGCC 2 cut(s) 79, 349
BspCNI CTCAG 2 cut(s) 672, 802
BspEI TCCGGA 1 cut(s) 512
BspFNI CGCG 2 cut(s) 148, 359
BspLI GGNNCC 1 cut(s) 670
BspTI CTTAAG 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 321
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 4 cut(s) 280, 565, 622, 672
BssMI GATC 1 cut(s) 425
BssT1I CCWWGG 3 cut(s) 280, 565, 672
Bst2UI CCWGG 2 cut(s) 623, 757
Bst4CI ACNGT 1 cut(s) 379
Bst6I CTCTTC 1 cut(s) 630
BstAFI CTTAAG 1 cut(s) 482
BstAPI GCANNNNNTGC 1 cut(s) 323
BstDEI CTNAG 3 cut(s) 542, 659, 810
BstDSI CCRYGG 1 cut(s) 672
BstENI CCTNNNNNAGG 1 cut(s) 160
BstF5I GGATG 5 cut(s) 398, 561, 691, 742, 752
BstFNI CGCG 2 cut(s) 148, 359
BstKTI GATC 1 cut(s) 428
BstMAI GTCTC 6 cut(s) 23, 213, 446, 527, 662, 834
BstMBI GATC 1 cut(s) 425
BstMWI GCNNNNNNNGC 3 cut(s) 71, 323, 326
BstNI CCWGG 2 cut(s) 623, 757
BstNSI RCATGY 1 cut(s) 177
BstSCI CCNGG 2 cut(s) 621, 755
BstSFI CTRYAG 2 cut(s) 261, 333
BstSLI GKGCMC 1 cut(s) 181
BstUI CGCG 2 cut(s) 148, 359
BstV1I GCAGC 4 cut(s) 74, 329, 338, 808
BstV2I GAAGAC 1 cut(s) 841
BsuRI GGCC 2 cut(s) 79, 349
BtgI CCRYGG 1 cut(s) 672
BtgZI GCGATG 1 cut(s) 537
BtsCI GGATG 5 cut(s) 398, 561, 691, 742, 752
BtsIMutI CAGTG 1 cut(s) 667
BtuMI TCGCGA 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 668
CseI GACGC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 408, 605
CviAII CATG 4 cut(s) 174, 411, 673, 724
CviQI GTAC 2 cut(s) 408, 605
DdeI CTNAG 3 cut(s) 542, 659, 810
DpnI GATC 1 cut(s) 427
DpnII GATC 1 cut(s) 425
DrdI GACNNNNNNGTC 1 cut(s) 826
DseDI GACNNNNNNGTC 1 cut(s) 826
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
Eco130I CCWWGG 3 cut(s) 280, 565, 672
Eco147I AGGCCT 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 668
Eco57I CTGAAG 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 449
EcoNI CCTNNNNNAGG 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 621, 755
EcoT14I CCWWGG 3 cut(s) 280, 565, 672
ErhI CCWWGG 3 cut(s) 280, 565, 672
FaeI CATG 4 cut(s) 177, 414, 676, 727
FaqI GGGAC 2 cut(s) 297, 654
FatI CATG 4 cut(s) 173, 410, 672, 723
FauI CCCGC 1 cut(s) 322
Fnu4HI GCNGC 6 cut(s) 9, 63, 318, 327, 357, 797
FokI GGATG 5 cut(s) 385, 548, 698, 739, 749
Fsp4HI GCNGC 6 cut(s) 9, 63, 318, 327, 357, 797
FspBI CTAG 4 cut(s) 54, 345, 608, 800
GluI GCNGC 6 cut(s) 9, 63, 318, 327, 357, 797
GsaI CCCAGC 1 cut(s) 731
HaeIII GGCC 2 cut(s) 79, 349
HapII CCGG 2 cut(s) 66, 513
HgaI GACGC 1 cut(s) 14
Hin1II CATG 4 cut(s) 177, 414, 676, 727
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HinfI GANTC 4 cut(s) 285, 365, 680, 773
HpaII CCGG 2 cut(s) 66, 513
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 3 cut(s) 179, 375, 382
Hpy188I TCNGA 4 cut(s) 95, 425, 685, 811
Hpy188III TCNNGA 5 cut(s) 147, 449, 513, 734, 831
Hpy8I GTNNAC 3 cut(s) 179, 375, 382
HpyAV CCTTC 5 cut(s) 54, 108, 166, 210, 540
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 1 cut(s) 649
HpyCH4V TGCA 4 cut(s) 11, 179, 326, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 323, 326
HpyF3I CTNAG 3 cut(s) 542, 659, 810
HpySE526I ACGT 1 cut(s) 649
Hsp92II CATG 4 cut(s) 177, 414, 676, 727
Kpn2I TCCGGA 1 cut(s) 512
Kzo9I GATC 1 cut(s) 425
LmnI GCTCC 1 cut(s) 414
LpnPI CCDG 8 cut(s) 79, 100, 526, 608, 635, 713, 742, 769
Lsp1109I GCAGC 4 cut(s) 74, 329, 338, 808
MaeI CTAG 4 cut(s) 54, 345, 608, 800
MaeII ACGT 1 cut(s) 649
MaeIII GTNAC 2 cut(s) 169, 817
MalI GATC 1 cut(s) 427
MboI GATC 1 cut(s) 425
MboII GAAGA 3 cut(s) 93, 647, 846
MhlI GDGCHC 2 cut(s) 34, 181
MluCI AATT 3 cut(s) 234, 304, 599
MlyI GAGTC 2 cut(s) 294, 689
MmeI TCCRAC 1 cut(s) 663
MnlI CCTC 6 cut(s) 202, 245, 460, 520, 631, 805
MroI TCCGGA 1 cut(s) 512
MseI TTAA 4 cut(s) 183, 483, 503, 579
MslI CAYNNNNRTG 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 439
MspCI CTTAAG 1 cut(s) 482
MspI CCGG 2 cut(s) 66, 513
MspR9I CCNGG 2 cut(s) 623, 757
MvaI CCWGG 2 cut(s) 623, 757
MvnI CGCG 2 cut(s) 148, 359
MwoI GCNNNNNNNGC 3 cut(s) 71, 323, 326
NcoI CCATGG 1 cut(s) 672
NdeII GATC 1 cut(s) 425
NlaIII CATG 4 cut(s) 177, 414, 676, 727
NlaIV GGNNCC 1 cut(s) 670
NmuCI GTSAC 2 cut(s) 169, 817
NruI TCGCGA 1 cut(s) 148
NspI RCATGY 1 cut(s) 177
PceI AGGCCT 1 cut(s) 79
PciI ACATGT 1 cut(s) 173
PfeI GAWTC 2 cut(s) 365, 773
PfoI TCCNGGA 1 cut(s) 755
PkrI GCNGC 6 cut(s) 10, 64, 319, 328, 358, 798
PleI GAGTC 2 cut(s) 293, 688
PpsI GAGTC 2 cut(s) 293, 688
PscI ACATGT 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 621, 755
PspFI CCCAGC 1 cut(s) 727
PspGI CCWGG 2 cut(s) 621, 755
PspN4I GGNNCC 1 cut(s) 670
PspPI GGNCC 1 cut(s) 668
PvuII CAGCTG 1 cut(s) 439
RruI TCGCGA 1 cut(s) 148
RsaI GTAC 2 cut(s) 409, 606
RsaNI GTAC 2 cut(s) 408, 605
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 4 cut(s) 183, 483, 503, 579
SatI GCNGC 6 cut(s) 9, 63, 318, 327, 357, 797
Sau3AI GATC 1 cut(s) 425
Sau96I GGNCC 1 cut(s) 668
SchI GAGTC 2 cut(s) 294, 689
ScrFI CCNGG 2 cut(s) 623, 757
SduI GDGCHC 2 cut(s) 34, 181
SfcI CTRYAG 2 cut(s) 261, 333
SinI GGWCC 1 cut(s) 668
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
SpeI ACTAGT 1 cut(s) 607
Sse9I AATT 3 cut(s) 234, 304, 599
SseBI AGGCCT 1 cut(s) 79
SsiI CCGC 4 cut(s) 136, 315, 357, 497
SspMI CTAG 4 cut(s) 54, 345, 608, 800
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 2 cut(s) 621, 755
StyI CCWWGG 3 cut(s) 280, 565, 672
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 1 cut(s) 652
TaqI TCGA 3 cut(s) 428, 691, 832
TasI AATT 3 cut(s) 234, 304, 599
TatI WGTACW 1 cut(s) 407
TauI GCSGC 1 cut(s) 359
TfiI GAWTC 2 cut(s) 365, 773
Tru1I TTAA 4 cut(s) 183, 483, 503, 579
Tru9I TTAA 4 cut(s) 183, 483, 503, 579
TscAI CASTG 1 cut(s) 667
TseFI GTSAC 2 cut(s) 169, 817
TseI GCWGC 5 cut(s) 8, 62, 317, 326, 796
Tsp45I GTSAC 2 cut(s) 169, 817
TspDTI ATGAA 3 cut(s) 357, 686, 756
TspRI CASTG 1 cut(s) 667
Vha464I CTTAAG 1 cut(s) 482
VneI GTGCAC 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 668
XagI CCTNNNNNAGG 1 cut(s) 160
XceI RCATGY 1 cut(s) 177
XspI CTAG 4 cut(s) 54, 345, 608, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.