Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003885

Physical Location & Seq

Genomic Coordinates Reverse (-)

84501490 .. 84503484

Gene Structure 1995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00062440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCCTGCGACACCTTCACCGCAAGATTGTGAAATTCTTAAGATTGCAGTAGCGGATTTTATCAAGTCTGGAATGTGCGATGAGGCAGAGAGACAACTTATTGATTTGTACGAAGAAACCAAGAAAAAAGGGCCTATTCCTGCAAATGCAGTGGAGATGGAATTGGTACTAGTTCTCATTTTCCAGGGAAAATACGAAAAGGCTTTGGGACGTGGTTGTCTCAGTGATGATGCCATGGTTGGTTCGGATGGTCGAGTTCATTTTTACAAGGCTATTATCTACACCATGCTAGATCGGGATGAGGAAGCCAAGTACCAGTGGGACATGTTTGTATCGTCCTTCGACAGTCAACTACCTAACATGGAGAAGCTTGAGGTCATGCATCAAAAGCAAAAAAGAATCCTGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.58

Weight (kDa)

5.08

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34540 AT2G34540
fragaria_vesca	FvH4_3g05540 FvH4_3g05550
prunus_persica	Prupe.4G080600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014121 RchiOBHm_Chr5g0014151 RchiOBHm_Chr5g0014161
rosa_laevigata	RLG00000032083 RLG00000032086 RLG00000032087 RLG00000032173
rosa_multiflora	Rmu_sc0007767.1_g000023 Rmu_sc0027898.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062440 Rroxscaffold_1G00062450 Rroxscaffold_1G00062490
rosa_rugosa	Rorug05G0015800 Rorug05G0016100 Rorug05G0024500
rosa_samantha	Rh5AG109900 Rh5AG110000 Rh5BG106600 Rh5BG106800 Rh5BG107000 Rh5BG107100 Rh5BG116900 Rh5CG118500 Rh5CG119000 Rh5DG105300 Rh5DG105500 Rh5DG105600
rosa_wichuraiana	Rw5G009600 Rw5G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	216
AciI	CCGC	2 cut(s)	20, 53
AcsI	RAATTY	1 cut(s)	33
AfaI	GTAC	3 cut(s)	110, 168, 314
AflII	CTTAAG	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	324
AhlI	ACTAGT	1 cut(s)	169
AjiI	CACGTC	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	1 cut(s)	370
AluI	AGCT	1 cut(s)	370
Alw26I	GTCTC	2 cut(s)	85, 224
AoxI	GGCC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	9
BccI	CCATC	2 cut(s)	151, 242
BciT130I	CCWGG	1 cut(s)	185
BcoDI	GTCTC	2 cut(s)	85, 224
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	2 cut(s)	170, 290
BfrI	CTTAAG	1 cut(s)	38
Bme1390I	CCNGG	1 cut(s)	185
BmgBI	CACGTC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	2 cut(s)	220, 391
BpuEI	CTTGAG	1 cut(s)	392
BsaJI	CCNNGG	2 cut(s)	184, 234
Bse1I	ACTGG	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	184, 234
BseGI	GGATG	2 cut(s)	253, 304
BseMII	CTCAG	2 cut(s)	235, 395
BseNI	ACTGG	1 cut(s)	316
BshFI	GGCC	1 cut(s)	133
BslFI	GGGAC	2 cut(s)	222, 335
BsmAI	GTCTC	2 cut(s)	85, 224
BsmFI	GGGAC	2 cut(s)	222, 335
BsnI	GGCC	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	292
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	2 cut(s)	20, 53
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	2 cut(s)	234, 396
BspTI	CTTAAG	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	2 cut(s)	184, 234
BssMI	GATC	1 cut(s)	292
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	347
BstAFI	CTTAAG	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	221, 404
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	2 cut(s)	253, 304
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	2 cut(s)	85, 224
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	1 cut(s)	185
BstNSI	RCATGY	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	133
BtgI	CCRYGG	1 cut(s)	234
BtgZI	GCGATG	1 cut(s)	93
BtrI	CACGTC	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	253, 304
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	3 cut(s)	156, 229, 323
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	3 cut(s)	109, 167, 313
CspCI	CAANNNNNGTGG	2 cut(s)	132, 167
CviAII	CATG	5 cut(s)	235, 286, 325, 361, 379
CviJI	RGCY	5 cut(s)	133, 203, 272, 308, 370
CviKI_1	RGCY	5 cut(s)	133, 203, 272, 308, 370
CviQI	GTAC	3 cut(s)	109, 167, 313
DdeI	CTNAG	2 cut(s)	221, 404
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
DrdI	GACNNNNNNGTC	1 cut(s)	216
DseDI	GACNNNNNNGTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	234
EcoT22I	ATGCAT	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	5 cut(s)	238, 289, 328, 364, 382
FaiI	YATR	5 cut(s)	236, 287, 326, 362, 380
FaqI	GGGAC	2 cut(s)	222, 335
FatI	CATG	5 cut(s)	234, 285, 324, 360, 378
FokI	GGATG	2 cut(s)	260, 311
FspBI	CTAG	2 cut(s)	170, 290
HaeIII	GGCC	1 cut(s)	133
Hin1II	CATG	5 cut(s)	238, 289, 328, 364, 382
HincII	GTYRAC	1 cut(s)	350
HindII	GTYRAC	1 cut(s)	350
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	1 cut(s)	399
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	3 cut(s)	69, 296, 403
Hpy8I	GTNNAC	1 cut(s)	350
HpyAV	CCTTC	2 cut(s)	24, 349
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	4 cut(s)	47, 143, 149, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	2 cut(s)	221, 404
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	5 cut(s)	238, 289, 328, 364, 382
Kzo9I	GATC	1 cut(s)	292
LpnPI	CCDG	6 cut(s)	18, 54, 153, 170, 197, 329
LweI	GCATC	2 cut(s)	220, 391
MaeI	CTAG	2 cut(s)	170, 290
MaeII	ACGT	1 cut(s)	211
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	1 cut(s)	125
MluCI	AATT	2 cut(s)	33, 161
MnlI	CCTC	3 cut(s)	76, 295, 367
Mph1103I	ATGCAT	1 cut(s)	384
MseI	TTAA	1 cut(s)	39
MspCI	CTTAAG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	388
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	5 cut(s)	238, 289, 328, 364, 382
NsiI	ATGCAT	1 cut(s)	384
NspI	RCATGY	1 cut(s)	328
PciI	ACATGT	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	399
PscI	ACATGT	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	131
RsaI	GTAC	3 cut(s)	110, 168, 314
RsaNI	GTAC	3 cut(s)	109, 167, 313
SaqAI	TTAA	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	185
SetI	ASST	5 cut(s)	16, 214, 358, 372, 378
SfaNI	GCATC	2 cut(s)	220, 391
SmlI	CTYRAG	2 cut(s)	38, 371
SmoI	CTYRAG	2 cut(s)	38, 371
SpeI	ACTAGT	1 cut(s)	169
Sse9I	AATT	2 cut(s)	33, 161
SsiI	CCGC	2 cut(s)	20, 53
SspMI	CTAG	2 cut(s)	170, 290
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	2 cut(s)	253, 342
TasI	AATT	2 cut(s)	33, 161
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	3 cut(s)	156, 229, 323
TspDTI	ATGAA	1 cut(s)	248
TspRI	CASTG	3 cut(s)	156, 229, 323
Vha464I	CTTAAG	1 cut(s)	38
XapI	RAATTY	1 cut(s)	33
XceI	RCATGY	1 cut(s)	328
XspI	CTAG	2 cut(s)	170, 290
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.