Rroxscaffold_1G00062450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003885
Physical Location & Seq
Reverse (-)
84544141 .. 84546232
2092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062450.1

Sequence Viewer

Length: 489 bp
ATGTTGAAGGTGAACAAACATTTAGCCACACCCGAGAGTAGAATGAGAATGGTGCTCAAATTGAAACCGCAGCTGTCTATGCCTGACACACCTTCACTGCAAGATCGTGAAAATCTTAAGATTGCAGTAGCGGAGTTAATCAAGTCCGGAAAGTGCGATGTGGCAGAGAGAAGACTTTATAATTTATACAAAGAAACCGAGAAAAAAGGGTCTATTCCTGCAAATGAAGTGGAGATGGAATTGGTACTAGTTCTCATTTTCCAGGGAAAATACGAACAAGCTTTGAAATGTAGATGTCTCAGTCATGATGCCGGGGTTGGTGGGGATGGTCGAGTTCCATATTACAAGGCCATTATCTACACCATGCTGGGTCAGGATGATGAAGCCGAGAAATACTGGCAAAAGTTTGTCGAATCCTTTCGGAGTCAACCACCGGTGGAAGACCATCCTGAGGTTAAAAATCCAAAGCGAAAAATAGAGAAACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.71

Weight (kDa)

9.02

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AccIII TCCGGA 1 cut(s) 146
AciI CCGC 2 cut(s) 68, 131
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 451
AflII CTTAAG 1 cut(s) 116
AgeI ACCGGT 1 cut(s) 433
AgsI TTSAA 3 cut(s) 7, 64, 286
AhlI ACTAGT 1 cut(s) 247
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 2 cut(s) 73, 281
AluI AGCT 2 cut(s) 73, 281
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 32
Aor13HI TCCGGA 1 cut(s) 146
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 1 cut(s) 70
AsiGI ACCGGT 1 cut(s) 433
Asp700I GAANNNNTTC 1 cut(s) 417
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 32
AxyI CCTNAGG 1 cut(s) 450
BbsI GAAGAC 2 cut(s) 178, 447
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 82
BccI CCATC 3 cut(s) 229, 320, 453
BciT130I CCWGG 1 cut(s) 263
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 302
BcuI ACTAGT 1 cut(s) 247
BfaI CTAG 1 cut(s) 248
BfrI CTTAAG 1 cut(s) 116
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
Bme1390I CCNGG 2 cut(s) 263, 313
BmeT110I CYCGRG 1 cut(s) 32
BmrFI CCNGG 2 cut(s) 263, 313
BmsI GCATC 1 cut(s) 298
BpiI GAAGAC 2 cut(s) 178, 447
BpuMI CCSGG 1 cut(s) 313
BsaJI CCNNGG 2 cut(s) 262, 312
BsaWI WCCGGW 2 cut(s) 146, 433
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse118I RCCGGY 1 cut(s) 433
Bse1I ACTGG 1 cut(s) 401
Bse21I CCTNAGG 1 cut(s) 450
BseAI TCCGGA 1 cut(s) 146
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 2 cut(s) 262, 312
BseGI GGATG 3 cut(s) 331, 382, 445
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMII CTCAG 2 cut(s) 313, 441
BseNI ACTGG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 367
BshFI GGCC 1 cut(s) 350
BshTI ACCGGT 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 3 cut(s) 147, 312, 434
BslI CCNNNNNNNGG 1 cut(s) 451
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 57
Bsp13I TCCGGA 1 cut(s) 146
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 2 cut(s) 68, 131
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 2 cut(s) 312, 442
BspEI TCCGGA 1 cut(s) 146
BspHI TCATGA 1 cut(s) 304
BspTI CTTAAG 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 433
BsrI ACTGG 1 cut(s) 401
BssAI RCCGGY 1 cut(s) 433
BssECI CCNNGG 2 cut(s) 262, 312
BssMI GATC 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 263
BstAFI CTTAAG 1 cut(s) 116
BstDEI CTNAG 2 cut(s) 299, 450
BstF5I GGATG 3 cut(s) 331, 382, 445
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 2 cut(s) 261, 311
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 2 cut(s) 178, 447
Bsu36I CCTNAGG 1 cut(s) 450
BsuRI GGCC 1 cut(s) 350
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 3 cut(s) 331, 382, 445
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 95
CciI TCATGA 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 433
Csp6I GTAC 1 cut(s) 245
CspAI ACCGGT 1 cut(s) 433
CspCI CAANNNNNGTGG 2 cut(s) 210, 245
CviAII CATG 2 cut(s) 305, 364
CviJI RGCY 5 cut(s) 26, 73, 281, 350, 386
CviKI_1 RGCY 5 cut(s) 26, 73, 281, 350, 386
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 2 cut(s) 299, 450
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eco81I CCTNAGG 1 cut(s) 450
Eco88I CYCGRG 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 261
FaeI CATG 2 cut(s) 308, 367
FaiI YATR 6 cut(s) 80, 180, 187, 306, 340, 365
FatI CATG 2 cut(s) 304, 363
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 3 cut(s) 338, 389, 432
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 1 cut(s) 248
GluI GCNGC 1 cut(s) 71
GsaI CCCAGC 1 cut(s) 371
HaeIII GGCC 1 cut(s) 350
HapII CCGG 3 cut(s) 147, 312, 434
Hin1II CATG 2 cut(s) 308, 367
HincII GTYRAC 1 cut(s) 428
HindII GTYRAC 1 cut(s) 428
HindIII AAGCTT 1 cut(s) 279
HinfI GANTC 2 cut(s) 413, 424
HpaII CCGG 3 cut(s) 147, 312, 434
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 2 cut(s) 13, 428
Hpy188I TCNGA 1 cut(s) 423
Hpy188III TCNNGA 5 cut(s) 107, 147, 305, 374, 449
Hpy8I GTNNAC 2 cut(s) 13, 428
HpyAV CCTTC 1 cut(s) 102
HpyCH4V TGCA 3 cut(s) 100, 125, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 2 cut(s) 299, 450
Hsp92II CATG 2 cut(s) 308, 367
Kpn2I TCCGGA 1 cut(s) 146
Kzo9I GATC 1 cut(s) 103
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 248
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 2 cut(s) 183, 452
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 3 cut(s) 59, 181, 239
MlyI GAGTC 1 cut(s) 433
MnlI CCTC 1 cut(s) 445
MroI TCCGGA 1 cut(s) 146
MroXI GAANNNNTTC 1 cut(s) 417
MseI TTAA 3 cut(s) 117, 137, 456
MspA1I CMGCKG 1 cut(s) 73
MspCI CTTAAG 1 cut(s) 116
MspI CCGG 3 cut(s) 147, 312, 434
MspR9I CCNGG 2 cut(s) 263, 313
MvaI CCWGG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 79
NciI CCSGG 1 cut(s) 313
NdeII GATC 1 cut(s) 103
NlaIII CATG 2 cut(s) 308, 367
NmeAIII GCCGAG 1 cut(s) 412
PagI TCATGA 1 cut(s) 304
PdmI GAANNNNTTC 1 cut(s) 417
PfeI GAWTC 1 cut(s) 413
PinAI ACCGGT 1 cut(s) 433
PkrI GCNGC 1 cut(s) 72
PleI GAGTC 1 cut(s) 432
PpsI GAGTC 1 cut(s) 432
PsiI TTATAA 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 261
PspFI CCCAGC 1 cut(s) 367
PspGI CCWGG 1 cut(s) 261
PvuII CAGCTG 1 cut(s) 73
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SaqAI TTAA 3 cut(s) 117, 137, 456
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 1 cut(s) 103
SchI GAGTC 1 cut(s) 433
ScrFI CCNGG 2 cut(s) 263, 313
SduI GDGCHC 1 cut(s) 57
SetI ASST 5 cut(s) 12, 75, 94, 283, 456
SfaNI GCATC 1 cut(s) 298
SgrAI CRCCGGYG 1 cut(s) 433
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SpeI ACTAGT 1 cut(s) 247
Sse9I AATT 3 cut(s) 59, 181, 239
SsiI CCGC 2 cut(s) 68, 131
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 2 cut(s) 261, 311
TaqI TCGA 2 cut(s) 331, 411
TasI AATT 3 cut(s) 59, 181, 239
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 3 cut(s) 117, 137, 456
Tru9I TTAA 3 cut(s) 117, 137, 456
TscAI CASTG 1 cut(s) 102
TseI GCWGC 1 cut(s) 70
TspDTI ATGAA 2 cut(s) 240, 396
TspRI CASTG 1 cut(s) 102
Vha464I CTTAAG 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 417
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.