Rmu_sc0027898.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027898.1
OG0003885
Physical Location & Seq
Reverse (-)
2 .. 523
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027898.1_g000001.1.cds

Sequence Viewer

Length: 522 bp
atggactctgcacttcgtctccatcgtagtgctctacgcattccttccaccactagccgtgcagccggattagcaaggccttattccagtttcagaccttcttctctttcacttttttcaaaggcttccacataccgcaccctatcgcgagacaccttcagtagtcctgtgatatgtgcactaaacaaaccctcgccaccttcgccaaactacgacaaagacaatggtaaaaaaattgtgatagtggtggggggtgcttctgtagttttggcttgtgtccttggagtcatcaacaacaacttcaatttcagtcccaaagccatggcaggcccccgaagggattcgcccaaacatgaagaaagtgcagtgggaccagtagtgaataggccgagtgacgtgttggattcattgttgaagatgaacagacatatagccacaccccagagtacgtggagaatccggacaccgaagctgtatgttcccccggaacctaaagattataatcctgacaatcttaaggtt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.03

Weight (kDa)

10.21

Isoelectric Point (pI)

62.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
AccII CGCG 1 cut(s) 148
AccIII TCCGGA 1 cut(s) 459
AciI CCGC 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 142
AfaI GTAC 1 cut(s) 448
AfiI CCNNNNNNNGG 1 cut(s) 337
AflII CTTAAG 1 cut(s) 515
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 3 cut(s) 120, 304, 415
AjiI CACGTC 1 cut(s) 397
AluBI AGCT 1 cut(s) 472
AluI AGCT 1 cut(s) 472
Alw21I GWGCWC 2 cut(s) 34, 181
Alw26I GTCTC 2 cut(s) 23, 144
Alw44I GTGCAC 1 cut(s) 177
Aor13HI TCCGGA 1 cut(s) 459
AoxI GGCC 3 cut(s) 77, 328, 386
ApaLI GTGCAC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 62
Asp700I GAANNNNTTC 1 cut(s) 340
AspS9I GGNCC 2 cut(s) 329, 371
AsuC2I CCSGG 1 cut(s) 485
AvaII GGWCC 1 cut(s) 371
BaeGI GKGCMC 1 cut(s) 181
Bbv12I GWGCWC 2 cut(s) 34, 181
BbvI GCAGC 1 cut(s) 74
BccI CCATC 1 cut(s) 30
BceAI ACGGC 1 cut(s) 42
BcnI CCSGG 1 cut(s) 485
BcoDI GTCTC 2 cut(s) 23, 144
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 261
BfrI CTTAAG 1 cut(s) 515
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 485
Bme18I GGWCC 1 cut(s) 371
BmgBI CACGTC 1 cut(s) 397
BmgT120I GGNCC 2 cut(s) 329, 371
BmiI GGNNCC 3 cut(s) 331, 372, 489
BmrFI CCNGG 1 cut(s) 485
BpuMI CCSGG 1 cut(s) 485
BsaAI YACGTR 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 501
BsaJI CCNNGG 3 cut(s) 280, 321, 483
BsaWI WCCGGW 1 cut(s) 459
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse1I ACTGG 2 cut(s) 87, 374
Bse8I GATNNNNATC 1 cut(s) 501
BseAI TCCGGA 1 cut(s) 459
BseDI CCNNGG 3 cut(s) 280, 321, 483
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 337
BseNI ACTGG 2 cut(s) 87, 374
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 1 cut(s) 74
BsgI GTGCAG 2 cut(s) 81, 384
Bsh1236I CGCG 1 cut(s) 148
BshFI GGCC 3 cut(s) 79, 330, 388
BsiHKAI GWGCWC 2 cut(s) 34, 181
BsiSI CCGG 3 cut(s) 66, 460, 485
BslFI GGGAC 2 cut(s) 297, 384
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 2 cut(s) 23, 144
BsmBI CGTCTC 1 cut(s) 23
BsmFI GGGAC 2 cut(s) 297, 384
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 3 cut(s) 79, 330, 388
Bsp1286I GDGCHC 2 cut(s) 34, 181
Bsp13I TCCGGA 1 cut(s) 459
Bsp19I CCATGG 1 cut(s) 321
Bsp68I TCGCGA 1 cut(s) 148
BspACI CCGC 1 cut(s) 136
BspANI GGCC 3 cut(s) 79, 330, 388
BspEI TCCGGA 1 cut(s) 459
BspFNI CGCG 1 cut(s) 148
BspLI GGNNCC 3 cut(s) 331, 372, 489
BspTI CTTAAG 1 cut(s) 515
BsrI ACTGG 2 cut(s) 87, 374
BssECI CCNNGG 3 cut(s) 280, 321, 483
BssT1I CCWWGG 2 cut(s) 280, 321
BstAFI CTTAAG 1 cut(s) 515
BstBAI YACGTR 1 cut(s) 450
BstC8I GCNNGC 1 cut(s) 328
BstDSI CCRYGG 1 cut(s) 321
BstFNI CGCG 1 cut(s) 148
BstMAI GTCTC 2 cut(s) 23, 144
BstMWI GCNNNNNNNGC 2 cut(s) 71, 202
BstSCI CCNGG 1 cut(s) 483
BstSFI CTRYAG 1 cut(s) 261
BstSLI GKGCMC 1 cut(s) 181
BstUI CGCG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 74
BstXI CCANNNNNNTGG 1 cut(s) 322
BsuRI GGCC 3 cut(s) 79, 330, 388
BtgI CCRYGG 1 cut(s) 321
BtrI CACGTC 1 cut(s) 397
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 1 cut(s) 372
BtuMI TCGCGA 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 329, 371
Csp6I GTAC 1 cut(s) 447
CviAII CATG 2 cut(s) 322, 353
CviQI GTAC 1 cut(s) 447
Eco130I CCWWGG 2 cut(s) 280, 321
Eco147I AGGCCT 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 329
EcoT14I CCWWGG 2 cut(s) 280, 321
ErhI CCWWGG 2 cut(s) 280, 321
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 2 cut(s) 325, 356
FaiI YATR 8 cut(s) 133, 175, 323, 354, 429, 431, 477, 501
FaqI GGGAC 2 cut(s) 297, 384
FatI CATG 2 cut(s) 321, 352
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 54
GluI GCNGC 1 cut(s) 63
HaeIII GGCC 3 cut(s) 79, 330, 388
HapII CCGG 3 cut(s) 66, 460, 485
Hin1II CATG 2 cut(s) 325, 356
HinfI GANTC 5 cut(s) 5, 285, 341, 404, 456
HpaII CCGG 3 cut(s) 66, 460, 485
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 95
Hpy188III TCNNGA 3 cut(s) 147, 460, 506
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 5 cut(s) 54, 108, 166, 210, 330
HpyCH4IV ACGT 2 cut(s) 396, 449
HpyCH4V TGCA 4 cut(s) 11, 62, 179, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 202
HpySE526I ACGT 2 cut(s) 396, 449
Hsp92II CATG 2 cut(s) 325, 356
Kpn2I TCCGGA 1 cut(s) 459
LpnPI CCDG 8 cut(s) 79, 100, 180, 312, 387, 455, 473, 498
Lsp1109I GCAGC 1 cut(s) 74
MaeI CTAG 1 cut(s) 54
MaeII ACGT 2 cut(s) 396, 449
MaeIII GTNAC 1 cut(s) 392
MboII GAAGA 3 cut(s) 93, 368, 427
MhlI GDGCHC 2 cut(s) 34, 181
MluCI AATT 2 cut(s) 234, 304
MlyI GAGTC 1 cut(s) 294
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 1 cut(s) 202
MroI TCCGGA 1 cut(s) 459
MroXI GAANNNNTTC 1 cut(s) 340
MseI TTAA 1 cut(s) 516
MslI CAYNNNNRTG 1 cut(s) 27
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 3 cut(s) 66, 460, 485
MspR9I CCNGG 1 cut(s) 485
Mva1269I GAATGC 1 cut(s) 39
MvnI CGCG 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 71, 202
NciI CCSGG 1 cut(s) 485
NcoI CCATGG 1 cut(s) 321
NlaIII CATG 2 cut(s) 325, 356
NlaIV GGNNCC 3 cut(s) 331, 372, 489
NmeAIII GCCGAG 1 cut(s) 414
NmuCI GTSAC 1 cut(s) 392
NruI TCGCGA 1 cut(s) 148
PceI AGGCCT 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PctI GAATGC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 340
PfeI GAWTC 3 cut(s) 341, 404, 456
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
Ppu21I YACGTR 1 cut(s) 450
PsiI TTATAA 1 cut(s) 501
PspN4I GGNNCC 3 cut(s) 331, 372, 489
PspPI GGNCC 2 cut(s) 329, 371
RruI TCGCGA 1 cut(s) 148
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 1 cut(s) 63
Sau96I GGNCC 2 cut(s) 329, 371
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 485
SduI GDGCHC 2 cut(s) 34, 181
SetI ASST 8 cut(s) 100, 158, 202, 399, 452, 474, 493, 522
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 2 cut(s) 234, 304
SseBI AGGCCT 1 cut(s) 79
SsiI CCGC 1 cut(s) 136
SspMI CTAG 1 cut(s) 54
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 483
StyI CCWWGG 2 cut(s) 280, 321
TaiI ACGT 2 cut(s) 399, 452
TasI AATT 2 cut(s) 234, 304
TfiI GAWTC 3 cut(s) 341, 404, 456
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 3 cut(s) 369, 396, 434
TspRI CASTG 1 cut(s) 372
Vha464I CTTAAG 1 cut(s) 515
VneI GTGCAC 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 371
XmnI GAANNNNTTC 1 cut(s) 340
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.