Rw5G009610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003885
Physical Location & Seq
Forward (+)
10332192 .. 10333901
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G009610.1

Sequence Viewer

Length: 876 bp
ATGGACTCTGCACTTCGTCTCCATCGTAGTGCTCTACGCATTCCTTCCACCACTAGCCGTGCAGCCGGATTAGCAAGGCCTTATTCCAGTTTCAGACCTGCTTCTCTTTCACTTTTTTCAAAGGCTTCCACATACCGCACCCTATCGCGAGACACCTTCAGTAGTCCTGTGATATGTGCACTAAACAAACCCTCGCCACCTTCGCCAAACTACGACAAAGACAATGGTAAAAAAATTGTGATAGTGGTGGGGGGTGCTTCTGTAGTTTTGGCTTGTGTCCTTGGAGTCATCAACAACAACTTCAATTTCAGTCCCAAAGCCATGGCAGGCGCCCGAAGGGATTCGCCCAAACATGAAGAAAGTGCAGTGGGACCAGTCGTGAATAGGCCGAGTGACGTGTTGGATTCATTGTTGAAGATGAACAGACATATAGCCACACCCAAGAGTACGTGGAGAATCCGGACACCGAAGCTTTATGTTCCCCCGGAACCTAAAGATTATAATCCTGACAATCTTAAGATTACAGTAGCAGAGTTAATCAAGTCCGGGAAGTGCGATGTGGCAGAGACGCAACTTAAAAGTTTATGCGGAACGGGGGGTGAAGTTGGAAACGATGTGGAGATGAATTTGGTACTAGTTCTCATTTTCCAGGGAAAATACAAAGAGGCTTTGGATCGTGGTTGTCTCAGTGGTGGTCCCATGGTTGAGTCGGATGGTCGAGTTCATTTTTACAAGGCTATTATATACACCATGCTGGGTCGGGATGGTGAAGCCAAGACATCCTGGAATAGATTTTTGGATTCCTATAATAACCCACCATCGCCGCAAGACTACTCTGAGGTTGCGACCCGAAAGTCTCGAAGAGACACACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

31.93

Weight (kDa)

9.62

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
AasI GACNNNNNNGTC 1 cut(s) 853
Acc36I ACCTGC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 329
AccII CGCG 1 cut(s) 148
AccIII TCCGGA 1 cut(s) 459
AciI CCGC 3 cut(s) 136, 588, 824
AclWI GGATC 1 cut(s) 681
AcsI RAATTY 1 cut(s) 625
AcuI CTGAAG 1 cut(s) 142
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 2 cut(s) 448, 633
AflII CTTAAG 1 cut(s) 515
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 3 cut(s) 120, 304, 415
AhlI ACTAGT 1 cut(s) 634
AjiI CACGTC 1 cut(s) 397
AjnI CCWGG 2 cut(s) 648, 782
AjuI GAANNNNNNNTTGG 2 cut(s) 779, 811
AluBI AGCT 1 cut(s) 472
AluI AGCT 1 cut(s) 472
Alw21I GWGCWC 2 cut(s) 34, 181
Alw26I GTCTC 6 cut(s) 23, 144, 560, 689, 858, 861
Alw44I GTGCAC 1 cut(s) 177
AlwI GGATC 1 cut(s) 681
Aor13HI TCCGGA 1 cut(s) 459
AoxI GGCC 2 cut(s) 77, 386
ApaLI GTGCAC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 625
Asp700I GAANNNNTTC 1 cut(s) 340
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 2 cut(s) 371, 695
AsuC2I CCSGG 2 cut(s) 485, 547
AsuHPI GGTGA 2 cut(s) 611, 779
AvaII GGWCC 2 cut(s) 371, 695
BaeGI GKGCMC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 329
Bbv12I GWGCWC 2 cut(s) 34, 181
BbvI GCAGC 1 cut(s) 74
BccI CCATC 4 cut(s) 30, 707, 758, 826
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 2 cut(s) 650, 784
BcnI CCSGG 2 cut(s) 485, 547
BcoDI GTCTC 6 cut(s) 23, 144, 560, 689, 858, 861
BcuI ACTAGT 1 cut(s) 634
BfaI CTAG 2 cut(s) 54, 635
BfmI CTRYAG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 333
BfrI CTTAAG 1 cut(s) 515
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 2 cut(s) 63, 824
BlsI GCNGC 2 cut(s) 64, 825
Bme1390I CCNGG 4 cut(s) 485, 547, 650, 784
Bme18I GGWCC 2 cut(s) 371, 695
BmgBI CACGTC 1 cut(s) 397
BmgT120I GGNCC 2 cut(s) 371, 695
BmiI GGNNCC 4 cut(s) 331, 372, 489, 697
BmrFI CCNGG 4 cut(s) 485, 547, 650, 784
BpuMI CCSGG 2 cut(s) 485, 547
BsaAI YACGTR 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 330
BsaJI CCNNGG 5 cut(s) 280, 321, 483, 649, 699
BsaWI WCCGGW 1 cut(s) 459
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bse1I ACTGG 2 cut(s) 87, 374
Bse8I GATNNNNATC 1 cut(s) 501
BseAI TCCGGA 1 cut(s) 459
BseBI CCWGG 2 cut(s) 650, 784
BseDI CCNNGG 5 cut(s) 280, 321, 483, 649, 699
BseGI GGATG 3 cut(s) 718, 769, 779
BseJI GATNNNNATC 1 cut(s) 501
BseMII CTCAG 2 cut(s) 700, 828
BseNI ACTGG 2 cut(s) 87, 374
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 1 cut(s) 74
BseYI CCCAGC 1 cut(s) 754
BsgI GTGCAG 2 cut(s) 81, 384
Bsh1236I CGCG 1 cut(s) 148
BshFI GGCC 2 cut(s) 79, 388
BshNI GGYRCC 1 cut(s) 329
BsiHKAI GWGCWC 2 cut(s) 34, 181
BsiSI CCGG 4 cut(s) 66, 460, 485, 546
BslFI GGGAC 3 cut(s) 297, 384, 681
BsmAI GTCTC 6 cut(s) 23, 144, 560, 689, 858, 861
BsmBI CGTCTC 2 cut(s) 23, 560
BsmFI GGGAC 3 cut(s) 297, 384, 681
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 2 cut(s) 79, 388
Bsp1286I GDGCHC 2 cut(s) 34, 181
Bsp13I TCCGGA 1 cut(s) 459
Bsp143I GATC 1 cut(s) 673
Bsp19I CCATGG 2 cut(s) 321, 699
Bsp68I TCGCGA 1 cut(s) 148
BspACI CCGC 3 cut(s) 136, 588, 824
BspANI GGCC 2 cut(s) 79, 388
BspCNI CTCAG 2 cut(s) 699, 829
BspEI TCCGGA 1 cut(s) 459
BspFNI CGCG 1 cut(s) 148
BspLI GGNNCC 4 cut(s) 331, 372, 489, 697
BspMI ACCTGC 1 cut(s) 106
BspPI GGATC 1 cut(s) 681
BspT107I GGYRCC 1 cut(s) 329
BspTI CTTAAG 1 cut(s) 515
BsrI ACTGG 2 cut(s) 87, 374
BssECI CCNNGG 5 cut(s) 280, 321, 483, 649, 699
BssMI GATC 1 cut(s) 673
BssNI GRCGYC 1 cut(s) 330
BssT1I CCWWGG 3 cut(s) 280, 321, 699
Bst2UI CCWGG 2 cut(s) 650, 784
Bst4CI ACNGT 1 cut(s) 526
Bst6I CTCTTC 1 cut(s) 856
BstACI GRCGYC 1 cut(s) 330
BstAFI CTTAAG 1 cut(s) 515
BstBAI YACGTR 1 cut(s) 450
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 2 cut(s) 686, 837
BstDSI CCRYGG 2 cut(s) 321, 699
BstF5I GGATG 3 cut(s) 718, 769, 779
BstFNI CGCG 1 cut(s) 148
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 1 cut(s) 676
BstMAI GTCTC 6 cut(s) 23, 144, 560, 689, 858, 861
BstMBI GATC 1 cut(s) 673
BstMWI GCNNNNNNNGC 2 cut(s) 71, 202
BstNI CCWGG 2 cut(s) 650, 784
BstSCI CCNGG 4 cut(s) 483, 545, 648, 782
BstSFI CTRYAG 1 cut(s) 261
BstSLI GKGCMC 1 cut(s) 181
BstUI CGCG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 74
BstXI CCANNNNNNTGG 1 cut(s) 322
BsuRI GGCC 2 cut(s) 79, 388
BtgI CCRYGG 2 cut(s) 321, 699
BtgZI GCGATG 2 cut(s) 570, 804
BtrI CACGTC 1 cut(s) 397
BtsCI GGATG 3 cut(s) 718, 769, 779
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 2 cut(s) 372, 694
BtuMI TCGCGA 1 cut(s) 148
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 328
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 2 cut(s) 371, 695
CseI GACGC 1 cut(s) 577
Csp6I GTAC 2 cut(s) 447, 632
CviAII CATG 4 cut(s) 322, 353, 700, 751
CviQI GTAC 2 cut(s) 447, 632
DdeI CTNAG 2 cut(s) 686, 837
DinI GGCGCC 1 cut(s) 331
DpnI GATC 1 cut(s) 675
DpnII GATC 1 cut(s) 673
DrdI GACNNNNNNGTC 1 cut(s) 853
DseDI GACNNNNNNGTC 1 cut(s) 853
Eam1104I CTCTTC 1 cut(s) 856
EarI CTCTTC 1 cut(s) 856
Eco130I CCWWGG 3 cut(s) 280, 321, 699
Eco147I AGGCCT 1 cut(s) 79
Eco47I GGWCC 2 cut(s) 371, 695
Eco57I CTGAAG 1 cut(s) 142
EcoRII CCWGG 2 cut(s) 648, 782
EcoT14I CCWWGG 3 cut(s) 280, 321, 699
EgeI GGCGCC 1 cut(s) 331
EheI GGCGCC 1 cut(s) 331
ErhI CCWWGG 3 cut(s) 280, 321, 699
Esp3I CGTCTC 2 cut(s) 23, 560
FaeI CATG 4 cut(s) 325, 356, 703, 754
FaqI GGGAC 3 cut(s) 297, 384, 681
FatI CATG 4 cut(s) 321, 352, 699, 750
Fnu4HI GCNGC 2 cut(s) 63, 824
FokI GGATG 3 cut(s) 725, 766, 776
Fsp4HI GCNGC 2 cut(s) 63, 824
FspBI CTAG 2 cut(s) 54, 635
GlaI GCGC 1 cut(s) 331
GluI GCNGC 2 cut(s) 63, 824
GsaI CCCAGC 1 cut(s) 758
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 2 cut(s) 79, 388
HapII CCGG 4 cut(s) 66, 460, 485, 546
HgaI GACGC 1 cut(s) 577
HhaI GCGC 1 cut(s) 332
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 4 cut(s) 325, 356, 703, 754
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 7 cut(s) 5, 285, 341, 404, 456, 707, 800
HpaII CCGG 4 cut(s) 66, 460, 485, 546
HphI GGTGA 2 cut(s) 611, 779
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 3 cut(s) 95, 712, 838
Hpy188III TCNNGA 6 cut(s) 147, 379, 460, 506, 761, 858
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 4 cut(s) 54, 166, 210, 330
HpyCH4III ACNGT 1 cut(s) 526
HpyCH4IV ACGT 2 cut(s) 396, 449
HpyCH4V TGCA 4 cut(s) 11, 62, 179, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 202
HpyF3I CTNAG 2 cut(s) 686, 837
HpySE526I ACGT 2 cut(s) 396, 449
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 4 cut(s) 325, 356, 703, 754
HspAI GCGC 1 cut(s) 330
KasI GGCGCC 1 cut(s) 329
Kpn2I TCCGGA 1 cut(s) 459
Kzo9I GATC 1 cut(s) 673
Lsp1109I GCAGC 1 cut(s) 74
MaeI CTAG 2 cut(s) 54, 635
MaeII ACGT 2 cut(s) 396, 449
MaeIII GTNAC 1 cut(s) 392
MalI GATC 1 cut(s) 675
MboI GATC 1 cut(s) 673
MboII GAAGA 3 cut(s) 368, 427, 873
MhlI GDGCHC 2 cut(s) 34, 181
MluCI AATT 3 cut(s) 234, 304, 625
Mly113I GGCGCC 1 cut(s) 330
MlyI GAGTC 2 cut(s) 294, 716
MmeI TCCRAC 3 cut(s) 381, 586, 690
MnlI CCTC 3 cut(s) 202, 658, 832
MroI TCCGGA 1 cut(s) 459
MroXI GAANNNNTTC 1 cut(s) 340
MseI TTAA 3 cut(s) 516, 536, 576
MslI CAYNNNNRTG 1 cut(s) 27
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 4 cut(s) 66, 460, 485, 546
MspR9I CCNGG 4 cut(s) 485, 547, 650, 784
Mva1269I GAATGC 1 cut(s) 39
MvaI CCWGG 2 cut(s) 650, 784
MvnI CGCG 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 71, 202
NarI GGCGCC 1 cut(s) 330
NciI CCSGG 2 cut(s) 485, 547
NcoI CCATGG 2 cut(s) 321, 699
NdeII GATC 1 cut(s) 673
NlaIII CATG 4 cut(s) 325, 356, 703, 754
NlaIV GGNNCC 4 cut(s) 331, 372, 489, 697
NmeAIII GCCGAG 1 cut(s) 414
NmuCI GTSAC 1 cut(s) 392
NruI TCGCGA 1 cut(s) 148
PceI AGGCCT 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PctI GAATGC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 340
PfeI GAWTC 4 cut(s) 341, 404, 456, 800
PfoI TCCNGGA 2 cut(s) 545, 782
PkrI GCNGC 2 cut(s) 64, 825
PleI GAGTC 2 cut(s) 293, 715
PluTI GGCGCC 1 cut(s) 333
PpsI GAGTC 2 cut(s) 293, 715
Ppu21I YACGTR 1 cut(s) 450
PsiI TTATAA 1 cut(s) 501
Psp6I CCWGG 2 cut(s) 648, 782
PspFI CCCAGC 1 cut(s) 754
PspGI CCWGG 2 cut(s) 648, 782
PspN4I GGNNCC 4 cut(s) 331, 372, 489, 697
PspPI GGNCC 2 cut(s) 371, 695
RruI TCGCGA 1 cut(s) 148
RsaI GTAC 2 cut(s) 448, 633
RsaNI GTAC 2 cut(s) 447, 632
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 3 cut(s) 516, 536, 576
SatI GCNGC 2 cut(s) 63, 824
Sau3AI GATC 1 cut(s) 673
Sau96I GGNCC 2 cut(s) 371, 695
SchI GAGTC 2 cut(s) 294, 716
ScrFI CCNGG 4 cut(s) 485, 547, 650, 784
SduI GDGCHC 2 cut(s) 34, 181
SetI ASST 8 cut(s) 100, 158, 202, 399, 452, 474, 493, 843
SfcI CTRYAG 1 cut(s) 261
SfoI GGCGCC 1 cut(s) 331
SinI GGWCC 2 cut(s) 371, 695
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
SpeI ACTAGT 1 cut(s) 634
Sse9I AATT 3 cut(s) 234, 304, 625
SseBI AGGCCT 1 cut(s) 79
SsiI CCGC 3 cut(s) 136, 588, 824
SspDI GGCGCC 1 cut(s) 329
SspMI CTAG 2 cut(s) 54, 635
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 4 cut(s) 483, 545, 648, 782
StyI CCWWGG 3 cut(s) 280, 321, 699
TaaI ACNGT 1 cut(s) 526
TaiI ACGT 2 cut(s) 399, 452
TaqI TCGA 2 cut(s) 718, 859
TasI AATT 3 cut(s) 234, 304, 625
TauI GCSGC 1 cut(s) 826
TfiI GAWTC 4 cut(s) 341, 404, 456, 800
Tru1I TTAA 3 cut(s) 516, 536, 576
Tru9I TTAA 3 cut(s) 516, 536, 576
TscAI CASTG 2 cut(s) 372, 694
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 5 cut(s) 369, 396, 434, 638, 713
TspRI CASTG 2 cut(s) 372, 694
Vha464I CTTAAG 1 cut(s) 515
VneI GTGCAC 1 cut(s) 177
VpaK11BI GGWCC 2 cut(s) 371, 695
XapI RAATTY 1 cut(s) 625
XmnI GAANNNNTTC 1 cut(s) 340
XspI CTAG 2 cut(s) 54, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.