RchiOBHm_Chr5g0014161

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003885
Physical Location & Seq
Forward (+)
9638916 .. 9641426
2511 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29463

Sequence Viewer

Length: 870 bp
ATGGACTCTGCACTTCGTCTCCATCGTAGTGCTCTACGCATTCCTTCCACCACTAGCCGTGCAGCCGGATTAGCAAGGCCTTATTCCAGTTTCAGACCTTCTTCTCTTTCACTTTTTTCAAAGGCTTCCACATACCGCACCCTATCGCGAGACACCTTCAGTTGTCCTGTGATATGTGCACTAAACAAACCCTCGCCACCTTCGCCAAACTACTACAAAGACAATGGTAAAAAAATTGTGATAGTGGTGGGGGGTGCTTCTGTAGTTTTGGCTTGTGTCCTTGGAGTCATCAACAACAACTTCAATTTCAGTCCCACAGCCATGGCAGGCTCCCGGGATTCGTCCAAACAAGAAAGTGCAGTGGGACCAGTCGTGAATAGGCCGAGTGACGTGTTGGATTCATTGTTGAAGGTGAACAGACATATAGCCACATCCAAGAGTACATGGAGAATCCGGACACCGCAGCTGTATGTTCCCCCGGAACCTAAAGATTATAATCCTGACAATCTTAAGATTACAGTAGCGGAGTTAATCAAGTCCGGGAAGTGCGATGTGGCAGAGACGCAACTTAGAAGTTTATGCAGAACGGGGGGTGAAGTTGGAAACGATGTGGAGATGAATTTGGTACTAGTTCTCATTTTCCAGGGAAAATACGAAGAGGCTTTGGAACGTGGTTGTCTCAGTGGTGGTCCCATGGTTGAGTCGGATGGTCGAGTTCATTTTTACAAGGCTATTATATACACCATGCTGGGTCGGGATGATGAAGCCAAGACATCCTGGAATAGATTTTTGGAATCCTATTCCAATCCACTATCGCAGCTAGACTACTCTGAGGTTGTGACCCCAAAGTCTCGAAGACCCCCACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

31.82

Weight (kDa)

9.42

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 495
AasI GACNNNNNNGTC 1 cut(s) 847
AccII CGCG 1 cut(s) 148
AccIII TCCGGA 1 cut(s) 453
AciI CCGC 3 cut(s) 136, 461, 524
AcsI RAATTY 1 cut(s) 619
AcuI CTGAAG 1 cut(s) 142
AfaI GTAC 2 cut(s) 442, 627
AflII CTTAAG 1 cut(s) 509
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 3 cut(s) 120, 304, 409
AhlI ACTAGT 1 cut(s) 628
AjiI CACGTC 1 cut(s) 391
AjnI CCWGG 2 cut(s) 642, 776
AjuI GAANNNNNNNTTGG 2 cut(s) 773, 805
AluBI AGCT 2 cut(s) 466, 820
AluI AGCT 2 cut(s) 466, 820
Alw21I GWGCWC 2 cut(s) 34, 181
Alw26I GTCTC 5 cut(s) 23, 144, 554, 683, 855
Alw44I GTGCAC 1 cut(s) 177
Ama87I CYCGRG 1 cut(s) 333
Aor13HI TCCGGA 1 cut(s) 453
AoxI GGCC 2 cut(s) 77, 380
ApaLI GTGCAC 1 cut(s) 177
ApeKI GCWGC 3 cut(s) 62, 463, 817
ApoI RAATTY 1 cut(s) 619
AspS9I GGNCC 2 cut(s) 365, 689
AsuC2I CCSGG 4 cut(s) 334, 335, 479, 541
AsuHPI GGTGA 2 cut(s) 424, 605
AvaI CYCGRG 1 cut(s) 333
AvaII GGWCC 2 cut(s) 365, 689
BaeGI GKGCMC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 862
Bbv12I GWGCWC 2 cut(s) 34, 181
BbvI GCAGC 3 cut(s) 74, 475, 829
BccI CCATC 2 cut(s) 30, 701
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 2 cut(s) 644, 778
BcnI CCSGG 4 cut(s) 334, 335, 479, 541
BcoDI GTCTC 5 cut(s) 23, 144, 554, 683, 855
BcuI ACTAGT 1 cut(s) 628
BfaI CTAG 3 cut(s) 54, 629, 821
BfmI CTRYAG 1 cut(s) 261
BfrI CTTAAG 1 cut(s) 509
BisI GCNGC 3 cut(s) 63, 464, 818
BlsI GCNGC 3 cut(s) 64, 465, 819
Bme1390I CCNGG 6 cut(s) 334, 335, 479, 541, 644, 778
Bme18I GGWCC 2 cut(s) 365, 689
BmeT110I CYCGRG 1 cut(s) 333
BmgBI CACGTC 1 cut(s) 391
BmgT120I GGNCC 2 cut(s) 365, 689
BmiI GGNNCC 4 cut(s) 331, 366, 483, 691
BmrFI CCNGG 6 cut(s) 334, 335, 479, 541, 644, 778
BpiI GAAGAC 1 cut(s) 862
BpuMI CCSGG 4 cut(s) 334, 335, 479, 541
BsaBI GATNNNNATC 1 cut(s) 495
BsaJI CCNNGG 6 cut(s) 280, 321, 333, 477, 643, 693
BsaWI WCCGGW 1 cut(s) 453
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bse1I ACTGG 2 cut(s) 87, 368
Bse8I GATNNNNATC 1 cut(s) 495
BseAI TCCGGA 1 cut(s) 453
BseBI CCWGG 2 cut(s) 644, 778
BseDI CCNNGG 6 cut(s) 280, 321, 333, 477, 643, 693
BseGI GGATG 4 cut(s) 431, 712, 763, 773
BseJI GATNNNNATC 1 cut(s) 495
BseMII CTCAG 2 cut(s) 694, 822
BseNI ACTGG 2 cut(s) 87, 368
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 3 cut(s) 74, 475, 829
BseYI CCCAGC 1 cut(s) 748
BsgI GTGCAG 2 cut(s) 81, 378
Bsh1236I CGCG 1 cut(s) 148
BshFI GGCC 2 cut(s) 79, 382
BsiHKAI GWGCWC 2 cut(s) 34, 181
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 5 cut(s) 66, 334, 454, 479, 540
BslFI GGGAC 3 cut(s) 297, 378, 675
BsmAI GTCTC 5 cut(s) 23, 144, 554, 683, 855
BsmBI CGTCTC 2 cut(s) 23, 554
BsmFI GGGAC 3 cut(s) 297, 378, 675
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 2 cut(s) 79, 382
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 2 cut(s) 34, 181
Bsp13I TCCGGA 1 cut(s) 453
Bsp19I CCATGG 2 cut(s) 321, 693
Bsp68I TCGCGA 1 cut(s) 148
BspACI CCGC 3 cut(s) 136, 461, 524
BspANI GGCC 2 cut(s) 79, 382
BspCNI CTCAG 2 cut(s) 693, 823
BspEI TCCGGA 1 cut(s) 453
BspFNI CGCG 1 cut(s) 148
BspLI GGNNCC 4 cut(s) 331, 366, 483, 691
BspTI CTTAAG 1 cut(s) 509
BsrI ACTGG 2 cut(s) 87, 368
BssECI CCNNGG 6 cut(s) 280, 321, 333, 477, 643, 693
BssT1I CCWWGG 3 cut(s) 280, 321, 693
Bst2UI CCWGG 2 cut(s) 644, 778
Bst4CI ACNGT 1 cut(s) 520
Bst6I CTCTTC 1 cut(s) 651
BstAFI CTTAAG 1 cut(s) 509
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 3 cut(s) 569, 680, 831
BstDSI CCRYGG 2 cut(s) 321, 693
BstF5I GGATG 4 cut(s) 431, 712, 763, 773
BstFNI CGCG 1 cut(s) 148
BstMAI GTCTC 5 cut(s) 23, 144, 554, 683, 855
BstMWI GCNNNNNNNGC 2 cut(s) 71, 202
BstNI CCWGG 2 cut(s) 644, 778
BstSCI CCNGG 6 cut(s) 332, 333, 477, 539, 642, 776
BstSFI CTRYAG 1 cut(s) 261
BstSLI GKGCMC 1 cut(s) 181
BstUI CGCG 1 cut(s) 148
BstV1I GCAGC 3 cut(s) 74, 475, 829
BstV2I GAAGAC 1 cut(s) 862
BstXI CCANNNNNNTGG 1 cut(s) 322
BsuRI GGCC 2 cut(s) 79, 382
BtgI CCRYGG 2 cut(s) 321, 693
BtgZI GCGATG 1 cut(s) 564
BtrI CACGTC 1 cut(s) 391
BtsCI GGATG 4 cut(s) 431, 712, 763, 773
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 2 cut(s) 366, 688
BtuMI TCGCGA 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 365, 689
Cfr9I CCCGGG 1 cut(s) 333
CseI GACGC 1 cut(s) 571
Csp6I GTAC 2 cut(s) 441, 626
CviAII CATG 4 cut(s) 322, 444, 694, 745
CviQI GTAC 2 cut(s) 441, 626
DdeI CTNAG 3 cut(s) 569, 680, 831
DrdI GACNNNNNNGTC 1 cut(s) 847
DseDI GACNNNNNNGTC 1 cut(s) 847
Eam1104I CTCTTC 1 cut(s) 651
EarI CTCTTC 1 cut(s) 651
Eco130I CCWWGG 3 cut(s) 280, 321, 693
Eco147I AGGCCT 1 cut(s) 79
Eco47I GGWCC 2 cut(s) 365, 689
Eco57I CTGAAG 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 333
EcoRII CCWGG 2 cut(s) 642, 776
EcoT14I CCWWGG 3 cut(s) 280, 321, 693
ErhI CCWWGG 3 cut(s) 280, 321, 693
Esp3I CGTCTC 2 cut(s) 23, 554
FaeI CATG 4 cut(s) 325, 447, 697, 748
FaqI GGGAC 3 cut(s) 297, 378, 675
FatI CATG 4 cut(s) 321, 443, 693, 744
Fnu4HI GCNGC 3 cut(s) 63, 464, 818
FokI GGATG 4 cut(s) 418, 719, 760, 770
Fsp4HI GCNGC 3 cut(s) 63, 464, 818
FspBI CTAG 3 cut(s) 54, 629, 821
GluI GCNGC 3 cut(s) 63, 464, 818
GsaI CCCAGC 1 cut(s) 752
HaeIII GGCC 2 cut(s) 79, 382
HapII CCGG 5 cut(s) 66, 334, 454, 479, 540
HgaI GACGC 1 cut(s) 571
Hin1II CATG 4 cut(s) 325, 447, 697, 748
HinfI GANTC 7 cut(s) 5, 285, 338, 398, 450, 701, 794
HpaII CCGG 5 cut(s) 66, 334, 454, 479, 540
HphI GGTGA 2 cut(s) 424, 605
Hpy166II GTNNAC 2 cut(s) 179, 415
Hpy188I TCNGA 3 cut(s) 95, 706, 832
Hpy188III TCNNGA 6 cut(s) 147, 373, 454, 500, 755, 852
Hpy8I GTNNAC 2 cut(s) 179, 415
HpyAV CCTTC 5 cut(s) 54, 108, 166, 210, 403
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4IV ACGT 2 cut(s) 390, 670
HpyCH4V TGCA 5 cut(s) 11, 62, 179, 359, 582
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 202
HpyF3I CTNAG 3 cut(s) 569, 680, 831
HpySE526I ACGT 2 cut(s) 390, 670
Hsp92II CATG 4 cut(s) 325, 447, 697, 748
Kpn2I TCCGGA 1 cut(s) 453
LmnI GCTCC 1 cut(s) 335
Lsp1109I GCAGC 3 cut(s) 74, 475, 829
MaeI CTAG 3 cut(s) 54, 629, 821
MaeII ACGT 2 cut(s) 390, 670
MaeIII GTNAC 2 cut(s) 386, 838
MboII GAAGA 3 cut(s) 93, 668, 867
MhlI GDGCHC 2 cut(s) 34, 181
MluCI AATT 3 cut(s) 234, 304, 619
MlyI GAGTC 2 cut(s) 294, 710
MmeI TCCRAC 3 cut(s) 375, 580, 684
MnlI CCTC 3 cut(s) 202, 652, 826
MroI TCCGGA 1 cut(s) 453
MseI TTAA 2 cut(s) 510, 530
MslI CAYNNNNRTG 2 cut(s) 27, 320
MspA1I CMGCKG 1 cut(s) 466
MspCI CTTAAG 1 cut(s) 509
MspI CCGG 5 cut(s) 66, 334, 454, 479, 540
MspR9I CCNGG 6 cut(s) 334, 335, 479, 541, 644, 778
Mva1269I GAATGC 1 cut(s) 39
MvaI CCWGG 2 cut(s) 644, 778
MvnI CGCG 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 71, 202
NciI CCSGG 4 cut(s) 334, 335, 479, 541
NcoI CCATGG 2 cut(s) 321, 693
NlaIII CATG 4 cut(s) 325, 447, 697, 748
NlaIV GGNNCC 4 cut(s) 331, 366, 483, 691
NmeAIII GCCGAG 1 cut(s) 408
NmuCI GTSAC 2 cut(s) 386, 838
NruI TCGCGA 1 cut(s) 148
PceI AGGCCT 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PctI GAATGC 1 cut(s) 39
PfeI GAWTC 4 cut(s) 338, 398, 450, 794
PfoI TCCNGGA 2 cut(s) 539, 776
PkrI GCNGC 3 cut(s) 64, 465, 819
PleI GAGTC 2 cut(s) 293, 709
PpsI GAGTC 2 cut(s) 293, 709
PsiI TTATAA 1 cut(s) 495
Psp6I CCWGG 2 cut(s) 642, 776
PspFI CCCAGC 1 cut(s) 748
PspGI CCWGG 2 cut(s) 642, 776
PspN4I GGNNCC 4 cut(s) 331, 366, 483, 691
PspPI GGNCC 2 cut(s) 365, 689
PvuII CAGCTG 1 cut(s) 466
RruI TCGCGA 1 cut(s) 148
RsaI GTAC 2 cut(s) 442, 627
RsaNI GTAC 2 cut(s) 441, 626
RseI CAYNNNNRTG 2 cut(s) 27, 320
SaqAI TTAA 2 cut(s) 510, 530
SatI GCNGC 3 cut(s) 63, 464, 818
Sau96I GGNCC 2 cut(s) 365, 689
SchI GAGTC 2 cut(s) 294, 710
ScrFI CCNGG 6 cut(s) 334, 335, 479, 541, 644, 778
SduI GDGCHC 2 cut(s) 34, 181
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 2 cut(s) 365, 689
SmaI CCCGGG 1 cut(s) 335
SmiMI CAYNNNNRTG 2 cut(s) 27, 320
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
SpeI ACTAGT 1 cut(s) 628
Sse9I AATT 3 cut(s) 234, 304, 619
SseBI AGGCCT 1 cut(s) 79
SsiI CCGC 3 cut(s) 136, 461, 524
SspMI CTAG 3 cut(s) 54, 629, 821
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 6 cut(s) 332, 333, 477, 539, 642, 776
StyI CCWWGG 3 cut(s) 280, 321, 693
TaaI ACNGT 1 cut(s) 520
TaiI ACGT 2 cut(s) 393, 673
TaqI TCGA 2 cut(s) 712, 853
TasI AATT 3 cut(s) 234, 304, 619
TatI WGTACW 1 cut(s) 440
TfiI GAWTC 4 cut(s) 338, 398, 450, 794
Tru1I TTAA 2 cut(s) 510, 530
Tru9I TTAA 2 cut(s) 510, 530
TscAI CASTG 2 cut(s) 366, 688
TseFI GTSAC 2 cut(s) 386, 838
TseI GCWGC 3 cut(s) 62, 463, 817
Tsp45I GTSAC 2 cut(s) 386, 838
TspDTI ATGAA 4 cut(s) 390, 632, 707, 777
TspMI CCCGGG 1 cut(s) 333
TspRI CASTG 2 cut(s) 366, 688
Vha464I CTTAAG 1 cut(s) 509
VneI GTGCAC 1 cut(s) 177
VpaK11BI GGWCC 2 cut(s) 365, 689
XapI RAATTY 1 cut(s) 619
XmaI CCCGGG 1 cut(s) 333
XspI CTAG 3 cut(s) 54, 629, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.