Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003885

Physical Location & Seq

Genomic Coordinates Forward (+)

11792605 .. 11794850

Gene Structure 2246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032173

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGACTTTGCACTTGGTCTCCATCGTGGTGCTCTACACATTCCTTCCACCACTAGCCGTGCAGCCGGATTAGCAAGGCCTTATTCCAGTTTCGAACCTTCTTCTCTTTCACTTTTTTCAAAGGCTTGCACATACCCCACCTTATTGCGACACACCTTCTGTAGTCCTGTAATATGTGTACTTAACAAGCCCTCGCCACCTTCGCCAAACTACAACAAGGACAATGGTAAAAGAATTGTGATAATGGTGGGGAGTGCTTCTGTAGTTTTGGCTTGTGTCCTTGGAGTCATCAACTACAACTTCAATTTCATTCCCACGGCCATTTCAGCCCCGCGGAAAAGTTCGTCGCCCACACATGAAGAAGGGCCAGAGGAACCAGTAGTCGTGTCTAGGACAGAAGAAGTGTTGGATTCGTTGTTGAAGATTGCAGTAGCGGATTTAATCAAGTCCGGAAAGTGCGATGAGGCAGAGACAAAACTTAGAGGGTTATACGAAAACATCCAAGGGAGTGAAGTTAAATACAATGTGGATATGGAATTGGTACTAGTTCTCATTTTCCAAGGAAAATACGAAGAAGCTTTGAAATGTAGATGTCTCAGTCATGATGCCGGGGTTGGTGGGGATGGTCGATTTCCATATTACAAGATTTTGGTGCATGTTTCAAATTTGCACGCTATTATCTACACCATGCTGAGTGGTGATGCTCGTGATAAAGCCGAGAAATACTCACAAAAAGCCCAGATGTACTGGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

27.62

Weight (kDa)

8.1

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34540 AT2G34540
fragaria_vesca	FvH4_3g05540 FvH4_3g05550
prunus_persica	Prupe.4G080600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014121 RchiOBHm_Chr5g0014151 RchiOBHm_Chr5g0014161
rosa_laevigata	RLG00000032083 RLG00000032086 RLG00000032087 RLG00000032173
rosa_multiflora	Rmu_sc0007767.1_g000023 Rmu_sc0027898.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062440 Rroxscaffold_1G00062450 Rroxscaffold_1G00062490
rosa_rugosa	Rorug05G0015800 Rorug05G0016100 Rorug05G0024500
rosa_samantha	Rh5AG109900 Rh5AG110000 Rh5BG106600 Rh5BG106800 Rh5BG107000 Rh5BG107100 Rh5BG116900 Rh5CG118500 Rh5CG119000 Rh5DG105300 Rh5DG105500 Rh5DG105600
rosa_wichuraiana	Rw5G009600 Rw5G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	334
AccIII	TCCGGA	1 cut(s)	449
AciI	CCGC	3 cut(s)	332, 334, 434
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	664
AfaI	GTAC	3 cut(s)	180, 543, 746
AgsI	TTSAA	5 cut(s)	120, 304, 421, 583, 663
AhlI	ACTAGT	1 cut(s)	544
AluBI	AGCT	1 cut(s)	578
AluI	AGCT	1 cut(s)	578
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	3 cut(s)	23, 464, 599
Aor13HI	TCCGGA	1 cut(s)	449
AoxI	GGCC	3 cut(s)	77, 318, 365
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	664
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	1 cut(s)	610
AsuHPI	GGTGA	1 cut(s)	710
AsuII	TTCGAA	1 cut(s)	93
BauI	CACGAG	1 cut(s)	705
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	2 cut(s)	30, 617
BceAI	ACGGC	2 cut(s)	42, 333
BcnI	CCSGG	1 cut(s)	610
BcoDI	GTCTC	3 cut(s)	23, 464, 599
BcuI	ACTAGT	1 cut(s)	544
BfaI	CTAG	3 cut(s)	54, 390, 545
BfmI	CTRYAG	2 cut(s)	160, 261
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	610
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	1 cut(s)	610
BmsI	GCATC	2 cut(s)	595, 691
BplI	GAGNNNNNCTC	2 cut(s)	710, 742
Bpu14I	TTCGAA	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	610
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	6 cut(s)	280, 315, 332, 502, 559, 609
BsaWI	WCCGGW	1 cut(s)	449
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bse1I	ACTGG	3 cut(s)	87, 377, 752
BseAI	TCCGGA	1 cut(s)	449
BseDI	CCNNGG	6 cut(s)	280, 315, 332, 502, 559, 609
BseGI	GGATG	2 cut(s)	498, 628
BseMII	CTCAG	2 cut(s)	610, 683
BseNI	ACTGG	3 cut(s)	87, 377, 752
BseXI	GCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	81
Bsh1236I	CGCG	1 cut(s)	334
BshFI	GGCC	3 cut(s)	79, 320, 367
BsiHKAI	GWGCWC	1 cut(s)	34
BsiSI	CCGG	3 cut(s)	66, 450, 609
BsmAI	GTCTC	3 cut(s)	23, 464, 599
BsnI	GGCC	3 cut(s)	79, 320, 367
Bso31I	GGTCTC	1 cut(s)	23
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp13I	TCCGGA	1 cut(s)	449
BspACI	CCGC	3 cut(s)	332, 334, 434
BspANI	GGCC	3 cut(s)	79, 320, 367
BspCNI	CTCAG	2 cut(s)	609, 684
BspEI	TCCGGA	1 cut(s)	449
BspFNI	CGCG	1 cut(s)	334
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	1 cut(s)	375
BspT104I	TTCGAA	1 cut(s)	93
BspTNI	GGTCTC	1 cut(s)	23
BsrI	ACTGG	3 cut(s)	87, 377, 752
BssECI	CCNNGG	6 cut(s)	280, 315, 332, 502, 559, 609
BssSI	CACGAG	1 cut(s)	705
BssT1I	CCWWGG	3 cut(s)	280, 502, 559
Bst2BI	CACGAG	1 cut(s)	705
BstBI	TTCGAA	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	127, 672
BstDEI	CTNAG	3 cut(s)	479, 596, 692
BstDSI	CCRYGG	2 cut(s)	315, 332
BstF5I	GGATG	2 cut(s)	498, 628
BstFNI	CGCG	1 cut(s)	334
BstMAI	GTCTC	3 cut(s)	23, 464, 599
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 202, 326
BstNSI	RCATGY	1 cut(s)	659
BstSCI	CCNGG	1 cut(s)	608
BstSFI	CTRYAG	2 cut(s)	160, 261
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	1 cut(s)	74
BsuRI	GGCC	3 cut(s)	79, 320, 367
BtgI	CCRYGG	2 cut(s)	315, 332
BtgZI	GCGATG	1 cut(s)	474
BtsCI	GGATG	2 cut(s)	498, 628
Cac8I	GCNNGC	2 cut(s)	127, 672
CciI	TCATGA	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	365
Cfr42I	CCGCGG	1 cut(s)	335
Csp6I	GTAC	3 cut(s)	179, 542, 745
CviAII	CATG	4 cut(s)	356, 602, 656, 688
CviQI	GTAC	3 cut(s)	179, 542, 745
DdeI	CTNAG	3 cut(s)	479, 596, 692
EaeI	YGGCCR	1 cut(s)	318
Eco130I	CCWWGG	3 cut(s)	280, 502, 559
Eco147I	AGGCCT	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	23
EcoT14I	CCWWGG	3 cut(s)	280, 502, 559
ErhI	CCWWGG	3 cut(s)	280, 502, 559
FaeI	CATG	4 cut(s)	359, 605, 659, 691
FaiI	YATR	9 cut(s)	133, 175, 357, 490, 533, 603, 637, 657, 689
FatI	CATG	4 cut(s)	355, 601, 655, 687
FauI	CCCGC	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	2 cut(s)	485, 635
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	3 cut(s)	54, 390, 545
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	3 cut(s)	79, 320, 367
HapII	CCGG	3 cut(s)	66, 450, 609
Hin1II	CATG	4 cut(s)	359, 605, 659, 691
HindIII	AAGCTT	1 cut(s)	576
HinfI	GANTC	2 cut(s)	285, 410
HpaII	CCGG	3 cut(s)	66, 450, 609
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188III	TCNNGA	3 cut(s)	450, 602, 707
Hpy8I	GTNNAC	1 cut(s)	179
Hpy99I	CGWCG	1 cut(s)	349
HpyAV	CCTTC	5 cut(s)	54, 108, 166, 210, 356
HpyCH4V	TGCA	6 cut(s)	11, 62, 129, 428, 655, 670
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 202, 326
HpyF3I	CTNAG	3 cut(s)	479, 596, 692
Hsp92II	CATG	4 cut(s)	359, 605, 659, 691
Kpn2I	TCCGGA	1 cut(s)	449
KspI	CCGCGG	1 cut(s)	335
LpnPI	CCDG	9 cut(s)	79, 100, 180, 381, 390, 463, 622, 733, 752
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	2 cut(s)	595, 691
MaeI	CTAG	3 cut(s)	54, 390, 545
MboII	GAAGA	5 cut(s)	93, 371, 410, 433, 584
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	4 cut(s)	234, 304, 536, 664
MlyI	GAGTC	1 cut(s)	294
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	4 cut(s)	202, 364, 457, 476
MroI	TCCGGA	1 cut(s)	449
MseI	TTAA	3 cut(s)	183, 440, 516
MslI	CAYNNNNRTG	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	3 cut(s)	66, 450, 609
MspR9I	CCNGG	1 cut(s)	610
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	3 cut(s)	71, 202, 326
NciI	CCSGG	1 cut(s)	610
NlaIII	CATG	4 cut(s)	359, 605, 659, 691
NlaIV	GGNNCC	1 cut(s)	375
NmeAIII	GCCGAG	1 cut(s)	742
NspI	RCATGY	1 cut(s)	659
NspV	TTCGAA	1 cut(s)	93
PagI	TCATGA	1 cut(s)	601
PceI	AGGCCT	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	410
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	365
RsaI	GTAC	3 cut(s)	180, 543, 746
RsaNI	GTAC	3 cut(s)	179, 542, 745
RseI	CAYNNNNRTG	1 cut(s)	27
SacII	CCGCGG	1 cut(s)	335
SaqAI	TTAA	3 cut(s)	183, 440, 516
SatI	GCNGC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	610
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	5 cut(s)	100, 143, 158, 202, 580
SfaNI	GCATC	2 cut(s)	595, 691
SfcI	CTRYAG	2 cut(s)	160, 261
Sfr303I	CCGCGG	1 cut(s)	335
SfuI	TTCGAA	1 cut(s)	93
SgrBI	CCGCGG	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	27
SpeI	ACTAGT	1 cut(s)	544
Sse9I	AATT	4 cut(s)	234, 304, 536, 664
SseBI	AGGCCT	1 cut(s)	79
SsiI	CCGC	3 cut(s)	332, 334, 434
SspMI	CTAG	3 cut(s)	54, 390, 545
StuI	AGGCCT	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	608
StyI	CCWWGG	3 cut(s)	280, 502, 559
TaqI	TCGA	2 cut(s)	93, 628
TasI	AATT	4 cut(s)	234, 304, 536, 664
TatI	WGTACW	2 cut(s)	178, 744
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	3 cut(s)	183, 440, 516
Tru9I	TTAA	3 cut(s)	183, 440, 516
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	298, 372
XapI	RAATTY	1 cut(s)	664
XceI	RCATGY	1 cut(s)	659
XspI	CTAG	3 cut(s)	54, 390, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.