AT2G40520

Nucleotidyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001135
Physical Location & Seq
Forward (+)
16922337 .. 16925961
3625 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40520.1

Sequence Viewer

Length: 1509 bp
ATGGCTGATCATAAAGGAAAGGTTCCAGTCTCTTTATCTGCATCCTCTTCATCGTTGTCTCTGTCTCCAAAAACAACGCCAATAGAGGCGGAAGTGTGGTTGATTGCTGAGGCAAGGGCTCAGGAGATACTATGTGCCATCCAACCTAACTATCTTGCAGAAAGAAGTAGGAATAAGATCATCAGTAATCTCCAGACTCTTCTGTGGGAACGTCTTGGAATTGAGGTGTATTTATTTGGTTCAATGCCATTAAAAACCTATCTCCCAGATGGAGATATTGATCTGACAGTTCTAACTCATCATGCTTCGGAGGAGGACTGTGCTAGAGCAGTGTGTTGTGTGCTTGAAGCTGAAATGGGAAATTCAGATCTCCAAGTAACTGGTGTTCAGTATGTCCAAGCAAAGGTCAAAGTCATAAAGTGCTCTATCAGGGACGTTGCTTTCGATATCTCCTTCAATCAATTGGCGGGACTAGGCGCTTTATGTTTTCTGGAGCAGGTTGACAAAGCTTTTGGTAGAGACCATCTGTTCAAAAAAAGCATCATTTTGGTTAAGGCCTGGTGTTTTTATGAAAGCCGTATTCTCGGTGCCAACTCTGGATTGATTTCGACATATGCATTGGCTATACTCGTCTTGAACATCGTCAACATGTCTTATTCATCACTGTCTGGCCCTTTAGCTGTTCTGTATAAGTTCATAAATTACTATGGATCATTTGATTGGAAGAATTACTGTGTCACGGTCACTGGTCCGGTCCCGATATCATCTCTTCCAGATATTACTGAAACCGGAAATCATGAAGTGTTCCTAGATGAGAAGTTCTTCAGAGAATGCATGGAGTTATATTCTGGGGAAACTGGAGTTGTTGAAGCCAGCAGGAAATATTTTCCTGTAAAATATTACAACATACTGGATCCTCTGAAACACAGTAACAACCTTGGACGTAGTGTGACAAAAGGAAATATGGTACGTTTAAGAAATTGTTTTATGCTGGGAGTTCAGAAACTCAGAGATGTGCTTACACTGCCTGGAGAGAACGTGGGTTGGAAACTGGAGAAGTTCTTTAATGTTTCACTGGAGAGGAACGGTAAGGGACAAAGACAAGACGTAGAGGAGCCTGTCGTCGCGTTTGGCACTGGAGCAGCAGACTACTCTCAACTTAAAGGAGATTTTGACAGATACCGCAATAATCTTATATACGGGAAGTGGTTTCACGGTGAGAGCCTGCATAACTGGCTCCCTCCGAGTCTAGACACAACTTCCTGGGCAAATATCAGCTTCTATATGAGCAGGGTAAGGAATGGTTTCAATGGGAGGAATCAGGAGGGACCAACATCCATGCCAAATATCAAACAGTCACCAAACAATCGGAGATCAAACGGAACAGGCACTTACATTCCTGGAATGAGTAAACAATCTAACACCGCTGGGTGCAGTAGCAGCAAACCGAGCACGGTGAAGTCATTACCTTCAGCATCTGAGACTCAAGAGTCCAAAAAGAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2

Protein Analysis

502

Amino Acids

55.9

Weight (kDa)

8.48

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTPAP-like_central PF22600 41 - 159 4.8e-10 Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1 PF26180 172 - 357 1.2e-74 PAP/OAS1 substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1489
Acc36I ACCTGC 1 cut(s) 487
AccB1I GGYRCC 1 cut(s) 587
AccII CGCG 1 cut(s) 1127
AciI CCGC 4 cut(s) 89, 467, 1183, 1425
AclWI GGATC 3 cut(s) 718, 908, 921
AcsI RAATTY 1 cut(s) 361
AcuI CTGAAG 2 cut(s) 808, 1455
AfaI GTAC 1 cut(s) 969
AfiI CCNNNNNNNGG 1 cut(s) 403
AflIII ACRYGT 1 cut(s) 648
AgsI TTSAA 7 cut(s) 243, 347, 457, 532, 637, 869, 1309
AjnI CCWGG 4 cut(s) 557, 1027, 1262, 1399
AluBI AGCT 4 cut(s) 350, 509, 680, 1278
AluI AGCT 4 cut(s) 350, 509, 680, 1278
Alw21I GWGCWC 2 cut(s) 425, 1454
Alw26I GTCTC 5 cut(s) 34, 63, 69, 513, 1475
AlwI GGATC 3 cut(s) 718, 908, 921
AlwNI CAGNNNCTG 1 cut(s) 1478
AoxI GGCC 2 cut(s) 555, 670
ApeKI GCWGC 2 cut(s) 1142, 1440
ApoI RAATTY 1 cut(s) 361
ArsI GACNNNNNNTTYG 4 cut(s) 425, 457, 494, 526
Asp700I GAANNNNTTC 2 cut(s) 821, 1304
AspLEI GCGC 1 cut(s) 479
AspS9I GGNCC 4 cut(s) 671, 749, 754, 1328
AsuHPI GGTGA 3 cut(s) 1229, 1350, 1468
AvaII GGWCC 3 cut(s) 749, 754, 1328
BamHI GGATCC 1 cut(s) 913
BanI GGYRCC 1 cut(s) 587
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 2 cut(s) 425, 1454
BbvCI CCTCAGC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 1154, 1452
BccI CCATC 3 cut(s) 146, 263, 531
BceAI ACGGC 1 cut(s) 561
BciT130I CCWGG 4 cut(s) 559, 1029, 1264, 1401
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 5 cut(s) 34, 63, 69, 513, 1475
BfaI CTAG 4 cut(s) 324, 473, 809, 1250
BfoI RGCGCY 1 cut(s) 480
BfuAI ACCTGC 1 cut(s) 487
BglII AGATCT 1 cut(s) 367
BisI GCNGC 2 cut(s) 1143, 1441
BlsI GCNGC 2 cut(s) 1144, 1442
Bme1390I CCNGG 4 cut(s) 559, 1029, 1264, 1401
Bme18I GGWCC 3 cut(s) 749, 754, 1328
BmgT120I GGNCC 4 cut(s) 671, 749, 754, 1328
BmiI GGNNCC 7 cut(s) 24, 589, 756, 915, 1116, 1238, 1329
BmrFI CCNGG 4 cut(s) 559, 1029, 1264, 1401
BmsI GCATC 3 cut(s) 50, 549, 1484
BpmI CTGGAG 7 cut(s) 176, 512, 879, 1050, 1073, 1097, 1158
Bpu10I CCTNAGC 2 cut(s) 108, 120
BpuEI CTTGAG 1 cut(s) 1470
BsaBI GATNNNNATC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 513
BsaJI CCNNGG 2 cut(s) 937, 1263
BsaWI WCCGGW 2 cut(s) 751, 788
BsaXI ACNNNNNCTCC 2 cut(s) 1023, 1053
Bsc4I CCNNNNNNNGG 1 cut(s) 403
Bse1I ACTGG 9 cut(s) 26, 385, 751, 862, 915, 1056, 1080, 1141, 1238
Bse8I GATNNNNATC 1 cut(s) 279
BseBI CCWGG 4 cut(s) 559, 1029, 1264, 1401
BseDI CCNNGG 2 cut(s) 937, 1263
BseGI GGATG 3 cut(s) 41, 138, 1334
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 403
BseMII CTCAG 4 cut(s) 99, 134, 1021, 1470
BseNI ACTGG 9 cut(s) 26, 385, 751, 862, 915, 1056, 1080, 1141, 1238
BseRI GAGGAG 2 cut(s) 326, 1127
BseXI GCAGC 2 cut(s) 1154, 1452
BseYI CCCAGC 2 cut(s) 991, 1427
BsgI GTGCAG 1 cut(s) 1453
Bsh1236I CGCG 1 cut(s) 1127
BshFI GGCC 2 cut(s) 557, 672
BshNI GGYRCC 1 cut(s) 587
BsiHKAI GWGCWC 2 cut(s) 425, 1454
BsiSI CCGG 2 cut(s) 752, 789
BslFI GGGAC 5 cut(s) 446, 483, 740, 1107, 1341
BslI CCNNNNNNNGG 1 cut(s) 403
BsmAI GTCTC 5 cut(s) 34, 63, 69, 513, 1475
BsmFI GGGAC 5 cut(s) 446, 483, 740, 1107, 1341
BsmI GAATGC 1 cut(s) 836
BsnI GGCC 2 cut(s) 557, 672
Bso31I GGTCTC 1 cut(s) 513
Bsp1286I GDGCHC 3 cut(s) 121, 425, 1454
Bsp143I GATC 7 cut(s) 7, 177, 280, 367, 710, 913, 1373
BspACI CCGC 4 cut(s) 89, 467, 1183, 1425
BspANI GGCC 2 cut(s) 557, 672
BspCNI CTCAG 4 cut(s) 100, 133, 1020, 1471
BspFNI CGCG 1 cut(s) 1127
BspHI TCATGA 1 cut(s) 796
BspLI GGNNCC 7 cut(s) 24, 589, 756, 915, 1116, 1238, 1329
BspMI ACCTGC 1 cut(s) 487
BspPI GGATC 3 cut(s) 718, 908, 921
BspT107I GGYRCC 1 cut(s) 587
BspTNI GGTCTC 1 cut(s) 513
BsrI ACTGG 9 cut(s) 26, 385, 751, 862, 915, 1056, 1080, 1141, 1238
BssECI CCNNGG 2 cut(s) 937, 1263
BssMI GATC 7 cut(s) 7, 177, 280, 367, 710, 913, 1373
BssT1I CCWWGG 1 cut(s) 937
Bst2UI CCWGG 4 cut(s) 559, 1029, 1264, 1401
Bst6I CTCTTC 3 cut(s) 52, 204, 774
BstC8I GCNNGC 2 cut(s) 874, 1226
BstDEI CTNAG 4 cut(s) 108, 120, 1007, 1479
BstF5I GGATG 3 cut(s) 41, 138, 1334
BstFNI CGCG 1 cut(s) 1127
BstH2I RGCGCY 1 cut(s) 480
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 7 cut(s) 10, 180, 283, 370, 713, 916, 1376
BstMAI GTCTC 5 cut(s) 34, 63, 69, 513, 1475
BstMBI GATC 7 cut(s) 7, 177, 280, 367, 710, 913, 1373
BstMWI GCNNNNNNNGC 4 cut(s) 1024, 1234, 1440, 1449
BstNI CCWGG 4 cut(s) 559, 1029, 1264, 1401
BstNSI RCATGY 1 cut(s) 652
BstSCI CCNGG 4 cut(s) 557, 1027, 1262, 1399
BstUI CGCG 1 cut(s) 1127
BstV1I GCAGC 2 cut(s) 1154, 1452
BstX2I RGATCY 2 cut(s) 367, 913
BstXI CCANNNNNNTGG 1 cut(s) 380
BstYI RGATCY 2 cut(s) 367, 913
BsuRI GGCC 2 cut(s) 557, 672
BtsCI GGATG 3 cut(s) 41, 138, 1334
BtsI GCAGTG 2 cut(s) 336, 1022
BtsIMutI CAGTG 6 cut(s) 336, 662, 744, 1022, 1073, 1134
BveI ACCTGC 1 cut(s) 487
Cac8I GCNNGC 2 cut(s) 874, 1226
CaiI CAGNNNCTG 1 cut(s) 1478
CciI TCATGA 1 cut(s) 796
CfoI GCGC 1 cut(s) 479
Cfr13I GGNCC 4 cut(s) 671, 749, 754, 1328
Csp6I GTAC 1 cut(s) 968
CviAII CATG 5 cut(s) 302, 649, 797, 835, 1339
CviQI GTAC 1 cut(s) 968
DdeI CTNAG 4 cut(s) 108, 120, 1007, 1479
DpnI GATC 7 cut(s) 9, 179, 282, 369, 712, 915, 1375
DpnII GATC 7 cut(s) 7, 177, 280, 367, 710, 913, 1373
DrdI GACNNNNNNGTC 1 cut(s) 1489
DseDI GACNNNNNNGTC 1 cut(s) 1489
Eam1104I CTCTTC 3 cut(s) 52, 204, 774
EarI CTCTTC 3 cut(s) 52, 204, 774
EciI GGCGGA 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 937
Eco147I AGGCCT 1 cut(s) 557
Eco24I GRGCYC 1 cut(s) 121
Eco31I GGTCTC 1 cut(s) 513
Eco32I GATATC 2 cut(s) 448, 762
Eco47I GGWCC 3 cut(s) 749, 754, 1328
Eco57I CTGAAG 2 cut(s) 808, 1455
EcoRII CCWGG 4 cut(s) 557, 1027, 1262, 1399
EcoRV GATATC 2 cut(s) 448, 762
EcoT14I CCWWGG 1 cut(s) 937
EcoT22I ATGCAT 2 cut(s) 619, 836
EcoT38I GRGCYC 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 937
FaeI CATG 5 cut(s) 305, 652, 800, 838, 1342
FaqI GGGAC 5 cut(s) 446, 483, 740, 1107, 1341
FatI CATG 5 cut(s) 301, 648, 796, 834, 1338
FauI CCCGC 1 cut(s) 460
FauNDI CATATG 1 cut(s) 613
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 2 cut(s) 1143, 1441
FokI GGATG 3 cut(s) 28, 125, 1321
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 2 cut(s) 1143, 1441
FspBI CTAG 4 cut(s) 324, 473, 809, 1250
GlaI GCGC 1 cut(s) 478
GluI GCNGC 2 cut(s) 1143, 1441
GsaI CCCAGC 2 cut(s) 995, 1431
GsuI CTGGAG 7 cut(s) 176, 512, 879, 1050, 1073, 1097, 1158
HaeII RGCGCY 1 cut(s) 480
HaeIII GGCC 2 cut(s) 557, 672
HapII CCGG 2 cut(s) 752, 789
HhaI GCGC 1 cut(s) 479
Hin1II CATG 5 cut(s) 305, 652, 800, 838, 1342
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HincII GTYRAC 2 cut(s) 502, 646
HindII GTYRAC 2 cut(s) 502, 646
HindIII AAGCTT 1 cut(s) 507
HinfI GANTC 6 cut(s) 196, 1246, 1318, 1483, 1490, 1501
HpaII CCGG 2 cut(s) 752, 789
HphI GGTGA 3 cut(s) 1229, 1350, 1468
Hpy166II GTNNAC 3 cut(s) 502, 646, 1412
Hpy8I GTNNAC 3 cut(s) 502, 646, 1412
Hpy99I CGWCG 1 cut(s) 1127
HpyAV CCTTC 2 cut(s) 463, 1479
HpyCH4IV ACGT 6 cut(s) 211, 435, 943, 970, 1038, 1107
HpyCH4V TGCA 6 cut(s) 41, 158, 617, 834, 1228, 1434
HpyF10VI GCNNNNNNNGC 4 cut(s) 1024, 1234, 1440, 1449
HpyF3I CTNAG 4 cut(s) 108, 120, 1007, 1479
HpySE526I ACGT 6 cut(s) 211, 435, 943, 970, 1038, 1107
Hsp92II CATG 5 cut(s) 305, 652, 800, 838, 1342
HspAI GCGC 1 cut(s) 477
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 7 cut(s) 7, 177, 280, 367, 710, 913, 1373
LmnI GCTCC 4 cut(s) 493, 1114, 1139, 1242
Lsp1109I GCAGC 2 cut(s) 1154, 1452
LweI GCATC 3 cut(s) 50, 549, 1484
MaeI CTAG 4 cut(s) 324, 473, 809, 1250
MaeII ACGT 6 cut(s) 211, 435, 943, 970, 1038, 1107
MaeIII GTNAC 6 cut(s) 376, 736, 742, 929, 949, 1356
MalI GATC 7 cut(s) 9, 179, 282, 369, 712, 915, 1375
MboI GATC 7 cut(s) 7, 177, 280, 367, 710, 913, 1373
MboII GAAGA 5 cut(s) 39, 191, 736, 761, 814
MfeI CAATTG 1 cut(s) 461
MflI RGATCY 2 cut(s) 367, 913
MhlI GDGCHC 3 cut(s) 121, 425, 1454
MluCI AATT 6 cut(s) 219, 361, 461, 700, 727, 979
MlyI GAGTC 4 cut(s) 190, 1255, 1477, 1499
MmeI TCCRAC 2 cut(s) 166, 1025
Mph1103I ATGCAT 2 cut(s) 619, 836
MroXI GAANNNNTTC 2 cut(s) 821, 1304
MseI TTAA 5 cut(s) 251, 552, 974, 1065, 1161
MspA1I CMGCKG 1 cut(s) 1427
MspI CCGG 2 cut(s) 752, 789
MspR9I CCNGG 4 cut(s) 559, 1029, 1264, 1401
MunI CAATTG 1 cut(s) 461
Mva1269I GAATGC 1 cut(s) 836
MvaI CCWGG 4 cut(s) 559, 1029, 1264, 1401
MvnI CGCG 1 cut(s) 1127
MwoI GCNNNNNNNGC 4 cut(s) 1024, 1234, 1440, 1449
NdeI CATATG 1 cut(s) 613
NdeII GATC 7 cut(s) 7, 177, 280, 367, 710, 913, 1373
NlaIII CATG 5 cut(s) 305, 652, 800, 838, 1342
NlaIV GGNNCC 7 cut(s) 24, 589, 756, 915, 1116, 1238, 1329
NmuCI GTSAC 4 cut(s) 736, 742, 949, 1356
NsiI ATGCAT 2 cut(s) 619, 836
NspI RCATGY 1 cut(s) 652
PagI TCATGA 1 cut(s) 796
PceI AGGCCT 1 cut(s) 557
PciI ACATGT 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PctI GAATGC 1 cut(s) 836
PdmI GAANNNNTTC 2 cut(s) 821, 1304
PfeI GAWTC 2 cut(s) 1318, 1501
PfoI TCCNGGA 1 cut(s) 1399
PkrI GCNGC 2 cut(s) 1144, 1442
PleI GAGTC 4 cut(s) 190, 1254, 1477, 1498
PpsI GAGTC 4 cut(s) 190, 1254, 1477, 1498
PscI ACATGT 1 cut(s) 648
Psp6I CCWGG 4 cut(s) 557, 1027, 1262, 1399
PspFI CCCAGC 2 cut(s) 991, 1427
PspGI CCWGG 4 cut(s) 557, 1027, 1262, 1399
PspN4I GGNNCC 7 cut(s) 24, 589, 756, 915, 1116, 1238, 1329
PspPI GGNCC 4 cut(s) 671, 749, 754, 1328
PsrI GAACNNNNNNTAC 2 cut(s) 369, 401
PstNI CAGNNNCTG 1 cut(s) 1478
PsuI RGATCY 2 cut(s) 367, 913
RsaI GTAC 1 cut(s) 969
RsaNI GTAC 1 cut(s) 968
SaqAI TTAA 5 cut(s) 251, 552, 974, 1065, 1161
SatI GCNGC 2 cut(s) 1143, 1441
Sau3AI GATC 7 cut(s) 7, 177, 280, 367, 710, 913, 1373
Sau96I GGNCC 4 cut(s) 671, 749, 754, 1328
SchI GAGTC 4 cut(s) 190, 1255, 1477, 1499
ScrFI CCNGG 4 cut(s) 559, 1029, 1264, 1401
SduI GDGCHC 3 cut(s) 121, 425, 1454
SfaNI GCATC 3 cut(s) 50, 549, 1484
SinI GGWCC 3 cut(s) 749, 754, 1328
SmlI CTYRAG 1 cut(s) 1485
SmoI CTYRAG 1 cut(s) 1485
Sse9I AATT 6 cut(s) 219, 361, 461, 700, 727, 979
SseBI AGGCCT 1 cut(s) 557
SsiI CCGC 4 cut(s) 89, 467, 1183, 1425
SspI AATATT 2 cut(s) 884, 899
SspMI CTAG 4 cut(s) 324, 473, 809, 1250
StuI AGGCCT 1 cut(s) 557
StyD4I CCNGG 4 cut(s) 557, 1027, 1262, 1399
StyI CCWWGG 1 cut(s) 937
TaiI ACGT 6 cut(s) 214, 438, 946, 973, 1041, 1110
TaqI TCGA 2 cut(s) 444, 608
TasI AATT 6 cut(s) 219, 361, 461, 700, 727, 979
TfiI GAWTC 2 cut(s) 1318, 1501
Tru1I TTAA 5 cut(s) 251, 552, 974, 1065, 1161
Tru9I TTAA 5 cut(s) 251, 552, 974, 1065, 1161
TscAI CASTG 6 cut(s) 336, 669, 751, 1029, 1080, 1141
TseFI GTSAC 4 cut(s) 736, 742, 949, 1356
TseI GCWGC 2 cut(s) 1142, 1440
Tsp45I GTSAC 4 cut(s) 736, 742, 949, 1356
TspDTI ATGAA 5 cut(s) 39, 585, 648, 685, 813
TspGWI ACGGA 1 cut(s) 1395
TspRI CASTG 6 cut(s) 336, 669, 751, 1029, 1080, 1141
VpaK11BI GGWCC 3 cut(s) 749, 754, 1328
XapI RAATTY 1 cut(s) 361
XbaI TCTAGA 1 cut(s) 1249
XceI RCATGY 1 cut(s) 652
XmnI GAANNNNTTC 2 cut(s) 821, 1304
XspI CTAG 4 cut(s) 324, 473, 809, 1250
Zsp2I ATGCAT 2 cut(s) 619, 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.