Rorug05G0419300

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001135
Physical Location & Seq
Forward (+)
58325747 .. 58327682
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0419300.1

Sequence Viewer

Length: 390 bp
ATGTCATCCAAAACCTACGCCTCTGATGTCCTCCAAGTCTCCTTCCAAATCGAACAGCTGCCGATCACCGCCGCTCTATCCAAGTTCTTCTTCTATGTCCTCTCTCAGAGCCTTGTCATCGATGTCGCGGACTTTGAGGCTCCGAAACGGCTCAGTTTCGATTCCGGAAGCAGTGTGGTTTGGGTTTCGAAGGCCCATGTCATGGAAGAAATGGTCATTTCAACGACCATTGGTATGGATGGAATTTCACTTGCCTCCAAAGAGGCAGCTATTGAAGAGTCATCTGTCATTATTTTTCTTGTTGATGGCCAGGGTGAGATCATAATTTTGATTGAAGAATTAGGAAAGAATTGGTGGGATAAATTTCGTGTTGATACGTCACCACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_assoc

Protein Analysis

129

Amino Acids

14.31

Weight (kDa)

4.49

Isoelectric Point (pI)

54.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 202
AccBSI CCGCTC 1 cut(s) 74
AccII CGCG 1 cut(s) 128
AccIII TCCGGA 1 cut(s) 164
AciI CCGC 3 cut(s) 69, 72, 128
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 2 cut(s) 243, 362
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 3 cut(s) 222, 275, 335
AjnI CCWGG 1 cut(s) 309
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AleI CACNNNNGTG 1 cut(s) 385
AluBI AGCT 2 cut(s) 58, 269
AluI AGCT 2 cut(s) 58, 269
Alw26I GTCTC 1 cut(s) 43
Aor13HI TCCGGA 1 cut(s) 164
AoxI GGCC 2 cut(s) 192, 307
ApeKI GCWGC 2 cut(s) 58, 266
ApoI RAATTY 2 cut(s) 243, 362
AspS9I GGNCC 1 cut(s) 193
AsuHPI GGTGA 3 cut(s) 58, 326, 372
AsuII TTCGAA 1 cut(s) 188
BalI TGGCCA 1 cut(s) 309
BbvI GCAGC 2 cut(s) 45, 278
BccI CCATC 2 cut(s) 233, 299
BceAI ACGGC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 43
BisI GCNGC 3 cut(s) 59, 72, 267
BlsI GCNGC 3 cut(s) 60, 73, 268
Bme1390I CCNGG 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 311
Bpu14I TTCGAA 1 cut(s) 188
Bsa29I ATCGAT 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 310, 383
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 202
BseAI TCCGGA 1 cut(s) 164
BseBI CCWGG 1 cut(s) 311
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 310, 383
BseGI GGATG 2 cut(s) 5, 244
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMII CTCAG 2 cut(s) 119, 166
BseXI GCAGC 2 cut(s) 45, 278
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 2 cut(s) 194, 309
BshVI ATCGAT 1 cut(s) 120
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 43
BsnI GGCC 2 cut(s) 194, 309
Bsp119I TTCGAA 1 cut(s) 188
Bsp13I TCCGGA 1 cut(s) 164
Bsp143I GATC 2 cut(s) 63, 318
BspACI CCGC 3 cut(s) 69, 72, 128
BspANI GGCC 2 cut(s) 194, 309
BspCNI CTCAG 2 cut(s) 118, 165
BspDI ATCGAT 1 cut(s) 120
BspEI TCCGGA 1 cut(s) 164
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 141
BspT104I TTCGAA 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 310, 383
BssMI GATC 2 cut(s) 63, 318
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 1 cut(s) 387
Bst6I CTCTTC 1 cut(s) 270
BstBI TTCGAA 1 cut(s) 188
BstDEI CTNAG 2 cut(s) 105, 152
BstDSI CCRYGG 1 cut(s) 383
BstF5I GGATG 2 cut(s) 5, 244
BstFNI CGCG 1 cut(s) 128
BstKTI GATC 2 cut(s) 66, 321
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 2 cut(s) 63, 318
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 309
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 2 cut(s) 45, 278
BstXI CCANNNNNNTGG 1 cut(s) 235
Bsu15I ATCGAT 1 cut(s) 120
BsuRI GGCC 2 cut(s) 194, 309
BsuTUI ATCGAT 1 cut(s) 120
BtgI CCRYGG 1 cut(s) 383
BtsCI GGATG 2 cut(s) 5, 244
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 193
ClaI ATCGAT 1 cut(s) 120
CviAII CATG 2 cut(s) 197, 202
CviJI RGCY 7 cut(s) 58, 111, 140, 151, 194, 269, 309
CviKI_1 RGCY 7 cut(s) 58, 111, 140, 151, 194, 269, 309
DdeI CTNAG 2 cut(s) 105, 152
DpnI GATC 2 cut(s) 65, 320
DpnII GATC 2 cut(s) 63, 318
EaeI YGGCCR 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 309
FaeI CATG 2 cut(s) 200, 205
FaiI YATR 5 cut(s) 96, 198, 203, 236, 323
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FatI CATG 2 cut(s) 196, 201
Fnu4HI GCNGC 3 cut(s) 59, 72, 267
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 3 cut(s) 59, 72, 267
GluI GCNGC 3 cut(s) 59, 72, 267
HaeIII GGCC 2 cut(s) 194, 309
HapII CCGG 1 cut(s) 165
Hin1II CATG 2 cut(s) 200, 205
HinfI GANTC 2 cut(s) 161, 278
HpaII CCGG 1 cut(s) 165
HphI GGTGA 3 cut(s) 58, 326, 372
Hpy188I TCNGA 3 cut(s) 25, 108, 144
Hpy188III TCNNGA 1 cut(s) 165
HpyAV CCTTC 2 cut(s) 52, 184
HpyCH4III ACNGT 1 cut(s) 387
HpyCH4IV ACGT 1 cut(s) 377
HpyF3I CTNAG 2 cut(s) 105, 152
HpySE526I ACGT 1 cut(s) 377
Hsp92II CATG 2 cut(s) 200, 205
Kpn2I TCCGGA 1 cut(s) 164
Kzo9I GATC 2 cut(s) 63, 318
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 3 cut(s) 178, 296, 323
Lsp1109I GCAGC 2 cut(s) 45, 278
MaeII ACGT 1 cut(s) 377
MaeIII GTNAC 1 cut(s) 378
MalI GATC 2 cut(s) 65, 320
MbiI CCGCTC 1 cut(s) 74
MboI GATC 2 cut(s) 63, 318
MboII GAAGA 5 cut(s) 79, 82, 218, 287, 347
MlsI TGGCCA 1 cut(s) 309
MluCI AATT 5 cut(s) 243, 324, 338, 349, 362
MluNI TGGCCA 1 cut(s) 309
MlyI GAGTC 1 cut(s) 287
MnlI CCTC 6 cut(s) 31, 41, 110, 130, 256, 265
Mox20I TGGCCA 1 cut(s) 309
MroI TCCGGA 1 cut(s) 164
MscI TGGCCA 1 cut(s) 309
MslI CAYNNNNRTG 2 cut(s) 233, 385
Msp20I TGGCCA 1 cut(s) 309
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 311
MvaI CCWGG 1 cut(s) 311
MvnI CGCG 1 cut(s) 128
NdeII GATC 2 cut(s) 63, 318
NlaIII CATG 2 cut(s) 200, 205
NlaIV GGNNCC 1 cut(s) 141
NmuCI GTSAC 1 cut(s) 378
NspV TTCGAA 1 cut(s) 188
OliI CACNNNNGTG 1 cut(s) 385
PfeI GAWTC 1 cut(s) 161
PflMI CCANNNNNTGG 1 cut(s) 202
PkrI GCNGC 3 cut(s) 60, 73, 268
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 193
PvuII CAGCTG 1 cut(s) 58
RseI CAYNNNNRTG 2 cut(s) 233, 385
SatI GCNGC 3 cut(s) 59, 72, 267
Sau3AI GATC 2 cut(s) 63, 318
Sau96I GGNCC 1 cut(s) 193
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 311
SetI ASST 4 cut(s) 17, 60, 271, 380
SfuI TTCGAA 1 cut(s) 188
SmiMI CAYNNNNRTG 2 cut(s) 233, 385
Sse9I AATT 5 cut(s) 243, 324, 338, 349, 362
SsiI CCGC 3 cut(s) 69, 72, 128
StyD4I CCNGG 1 cut(s) 309
TaaI ACNGT 1 cut(s) 387
TaiI ACGT 1 cut(s) 380
TaqI TCGA 4 cut(s) 51, 120, 159, 188
TasI AATT 5 cut(s) 243, 324, 338, 349, 362
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 161
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 378
TseI GCWGC 2 cut(s) 58, 266
Tsp45I GTSAC 1 cut(s) 378
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 1 cut(s) 202
XapI RAATTY 2 cut(s) 243, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.