Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001135

Physical Location & Seq

Genomic Coordinates Forward (+)

62953143 .. 62959375

Gene Structure 6233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG354200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1863 bp

ATGGAAGATTGCTCTTCTTCTGAAATATCAATAGATAAATGGTTGACAGCTGAGCATAGGGTCCAAGAGATCTTATGGGCTGTTCAACCGAATGTAGCCTCTGAGTGGAGGAGGAGGGAGCTAATCGATTATGTTCAAAGGATAATCAAAGGTCATTTCGGAACTGAGGTGTTGTCCTTTGGTTCAGTTCCTTTAAAAACGTATCTCCCTGATGGAGATATTGATTTGACAGTACTCTGTCATCGGAAGCAGGAGGAAGACTTAGCTAGGGCTATCTGCAGTCACCTTCAAGGTGAACCAAAGGAACCTGGGTTCTTGGTTGAAGATGTTAGATACATTTATGCAAAGGTTAAGATCATAAAATGCACTGTGAATAATATAGCAGTTGATATTTCATTTAATCAGGTGGCTGGGCTGTGTACACTGTGCTTTCTGGAGCAGGTGGACCAGGTCGTTGGAAGAGACCACCTTTTTAAAAAGAGTATAATCTTGATCAAAGCTTGGTGCTATTATGAGAGCCGAACCGTTGGTGCACCCCATGGCTTGATTTCCACATATGCACTAGAAACACTGGTCTTGTATATCATCAATCTCTTTCATTCATCACTCCGTGGACCTCTACAGGTTCTTCATAGATTTTTGGAATACTATAGCAAATTTGATTGGACAAATTATTGCATCAGTATAAATGGTCCAGTTTCCTTATCATCCGTTCTTAAAATCAGAGAGACACCAGAAAATGAGGGGGAGAATTTACTGTTCACCAAGGAATTTTTGAAGAAATGTAGAGTTGCATTTTCAGATCCAAGAAGAATCAGCGAAGCTAGACTGCAGGAATTCCCAATCAAGTGCTTCAACGTAGTGGATCCTCTAAAAGACAACAACAATCTAGGCCGTAGTGTTACTTCAGGAAACTTCGCTCGCATTAAATCTGCTTTTGCATTTGGAGAAAATGAGCTCCGGAGAATTCTAGCGCTACCGGGTGAAAGCATTGGCCAAAAACTTCAAAAAGATTTTTTTCCTGTCACTTTAAATAGGAATGGGAGGGGACAAAGACCAGATTTGCAAGCTCTTGTACCAGCATTTGGTAGTGGAAGATATGTACAATCTAACCTCACTGGGGACTTTGATTATTATTATGGGGGAATATTGTATGCGCAGTGGCTTCATGATGAAAGCTTACATCTTTCTTCACACCCAAGTCCGCCACCTTCTCAAGTCCAGAATAACACCACATGGAATGCCAGGACTTGGTCAGTGAATGTCTTTGATCAAATGTCAATGAATGCATATGCATTACCTTTCTATCATCATTGTGCTTCCCAACAGACTGCTCATATAAGGACATTGCCAGGAACTGGCATGTACATACCTGATCCGAGTCCTCATTACAGACAGATGTATTCAAGGGCGAGGGGAAGGAACGAGTCTAAAAATCTTCGGGTGATGATGAAACCACCCCAAAAGGTTAACCAGTCAGAAACAAGTACTGGTGTACATGTAACCAGCATTGATCTTTCACTTGAGGAAGTTCCACATCTTCCAGGCACTCAACCACCCCCACCTCCACAAGTCTCTAAATCTGGTAAGCCCTGGCCATCTCTTCAATCCCAGGTGCCCCCTCAGACCAATGAGTATTGTAAGCTTGGGGTTTTGGGGCCTGCATCATTGCCTTTGGGAATGCATTCACTTGAAGCAAAAGCAGATTCTTGTAGTTCATATGCTAGGGACCTTACACCGAAGGTCCCTGTAATGGGAATGCCAAGTCAACAAGTACGTTCAAGCATTGATGAGATCAATAAAGAGCCGTTCCAGTTGGACAATAAAGATTTTCCGCCTTCGGGTAGCAAAACAAATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

620

Amino Acids

69.97

Weight (kDa)

8.12

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	21 - 139	1.7e-12	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	152 - 343	6.6e-85	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320
fragaria_vesca	FvH4_3g40330 FvH4_3g40330 FvH4_3g40330 FvH4_7g25750 FvH4_7g25750 FvH4_7g25750 FvH4_7g25750
malus_domestica	MD01G1165200.v1.1 MD03G1053200.v1.1 MD07G1232500.v1.1 MD11G1054900.v1.1
prunus_persica	Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.6G042500_v2.0.a1 Prupe.6G042500_v2.0.a1
pyrus_communis	pycom01g17910 pycom03g04230 pycom11g04480
rosa_chinensis	RchiOBHm_Chr1g0372011 RchiOBHm_Chr5g0072681
rosa_laevigata	RLG00000026928 RLG00000036325
rosa_multiflora	Rmu_sc0001755.1_g000036 Rmu_sc0003160.1_g000034
rosa_roxburghii	Rroxscaffold_1G00008460
rosa_rugosa	Rorug01G0367900 Rorug01G0368000 Rorug01G0368100 Rorug01G0368200 Rorug01G0368300 Rorug05G0419200 Rorug05G0419300
rosa_samantha	Rh1AG377600 Rh1BG341000 Rh1CG354200 Rh1DG372000 Rh5AG476200 Rh5BG496400 Rh5CG520200 Rh5DG508800
rosa_wichuraiana	Rw1G033220 Rw5G044220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	430
Acc16I	TGCGCA	1 cut(s)	1158
Acc36I	ACCTGC	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	1615
AccB7I	CCANNNNNTGG	3 cut(s)	1085, 1251, 1358
AccIII	TCCGGA	1 cut(s)	960
AciI	CCGC	2 cut(s)	1205, 1835
AclWI	GGATC	4 cut(s)	797, 860, 873, 1370
AcoI	YGGCCR	2 cut(s)	994, 1595
AcsI	RAATTY	5 cut(s)	656, 751, 770, 836, 966
AcuI	CTGAAG	1 cut(s)	891
AdeI	CACNNNGTG	1 cut(s)	611
AfaI	GTAC	8 cut(s)	234, 421, 1077, 1104, 1367, 1489, 1497, 1776
AfeI	AGCGCT	1 cut(s)	975
AfiI	CCNNNNNNNGG	8 cut(s)	105, 1085, 1120, 1251, 1358, 1753, 1754, 1841
AflIII	ACRYGT	1 cut(s)	1498
AjnI	CCWGG	7 cut(s)	307, 447, 1244, 1351, 1543, 1592, 1611
AloI	GAACNNNNNNTCC	2 cut(s)	296, 328
AluBI	AGCT	9 cut(s)	50, 121, 266, 500, 824, 958, 1070, 1179, 1645
AluI	AGCT	9 cut(s)	50, 121, 266, 500, 824, 958, 1070, 1179, 1645
Alw21I	GWGCWC	2 cut(s)	535, 960
Alw26I	GTCTC	3 cut(s)	456, 722, 1579
Alw44I	GTGCAC	1 cut(s)	531
AlwI	GGATC	4 cut(s)	797, 860, 873, 1370
AlwNI	CAGNNNCTG	1 cut(s)	1358
Aor13HI	TCCGGA	1 cut(s)	960
Aor51HI	AGCGCT	1 cut(s)	975
AoxI	GGCC	4 cut(s)	892, 994, 1595, 1658
ApaLI	GTGCAC	1 cut(s)	531
ApoI	RAATTY	5 cut(s)	656, 751, 770, 836, 966
Asp700I	GAANNNNTTC	1 cut(s)	1684
AspLEI	GCGC	2 cut(s)	976, 1159
AspS9I	GGNCC	7 cut(s)	61, 445, 614, 692, 1658, 1729, 1744
AsuC2I	CCSGG	1 cut(s)	981
AsuHPI	GGTGA	5 cut(s)	275, 305, 754, 995, 1456
AvaII	GGWCC	6 cut(s)	61, 445, 614, 692, 1729, 1744
BaeGI	GKGCMC	2 cut(s)	535, 1620
BalI	TGGCCA	2 cut(s)	996, 1597
BamHI	GGATCC	1 cut(s)	865
BanI	GGYRCC	1 cut(s)	1615
BanII	GRGCYC	1 cut(s)	960
BarI	GAAGNNNNNNTAC	2 cut(s)	889, 921
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	2 cut(s)	535, 960
BccI	CCATC	2 cut(s)	206, 1606
BceAI	ACGGC	2 cut(s)	879, 1792
BciT130I	CCWGG	7 cut(s)	309, 449, 1246, 1353, 1545, 1594, 1613
BclI	TGATCA	2 cut(s)	492, 1270
BcnI	CCSGG	1 cut(s)	981
BcoDI	GTCTC	3 cut(s)	456, 722, 1579
BfaI	CTAG	6 cut(s)	267, 563, 825, 890, 971, 1725
BfmI	CTRYAG	4 cut(s)	277, 620, 649, 830
BfoI	RGCGCY	1 cut(s)	977
BfuAI	ACCTGC	1 cut(s)	430
BglII	AGATCT	1 cut(s)	69
BlpI	GCTNAGC	1 cut(s)	51
BmcAI	AGTACT	2 cut(s)	234, 1489
Bme1390I	CCNGG	8 cut(s)	309, 449, 981, 1246, 1353, 1545, 1594, 1613
Bme18I	GGWCC	6 cut(s)	61, 445, 614, 692, 1729, 1744
BmgT120I	GGNCC	7 cut(s)	61, 445, 614, 692, 1658, 1729, 1744
BmiI	GGNNCC	7 cut(s)	62, 306, 867, 1617, 1659, 1730, 1746
BmrFI	CCNGG	8 cut(s)	309, 449, 981, 1246, 1353, 1545, 1594, 1613
BmrI	ACTGGG	1 cut(s)	1128
BmsI	GCATC	2 cut(s)	687, 1673
BmuI	ACTGGG	1 cut(s)	1128
BpiI	GAAGAC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	455
Bpu1102I	GCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	2 cut(s)	1200, 1544
BpuMI	CCSGG	1 cut(s)	981
Bsa29I	ATCGAT	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	6 cut(s)	308, 538, 610, 765, 1592, 1611
BsaWI	WCCGGW	1 cut(s)	960
Bsc4I	CCNNNNNNNGG	8 cut(s)	105, 1085, 1120, 1251, 1358, 1753, 1754, 1841
Bse1I	ACTGG	7 cut(s)	576, 695, 1123, 1363, 1474, 1495, 1813
Bse3DI	GCAATG	2 cut(s)	1346, 1667
BseAI	TCCGGA	1 cut(s)	960
BseBI	CCWGG	7 cut(s)	309, 449, 1246, 1353, 1545, 1594, 1613
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	6 cut(s)	308, 538, 610, 765, 1592, 1611
BseGI	GGATG	1 cut(s)	707
BseLI	CCNNNNNNNGG	8 cut(s)	105, 1085, 1120, 1251, 1358, 1753, 1754, 1841
BseMI	GCAATG	2 cut(s)	1346, 1667
BseMII	CTCAG	4 cut(s)	42, 93, 156, 1637
BseNI	ACTGG	7 cut(s)	576, 695, 1123, 1363, 1474, 1495, 1813
BseRI	GAGGAG	2 cut(s)	124, 127
BseSI	GKGCMC	2 cut(s)	535, 1620
BseYI	CCCAGC	1 cut(s)	410
BshFI	GGCC	4 cut(s)	894, 996, 1597, 1660
BshNI	GGYRCC	1 cut(s)	1615
BshVI	ATCGAT	1 cut(s)	126
BsiHKAI	GWGCWC	2 cut(s)	535, 960
BsiSI	CCGG	2 cut(s)	961, 980
BslFI	GGGAC	4 cut(s)	1062, 1136, 1730, 1742
BslI	CCNNNNNNNGG	8 cut(s)	105, 1085, 1120, 1251, 1358, 1753, 1754, 1841
BsmAI	GTCTC	3 cut(s)	456, 722, 1579
BsmFI	GGGAC	4 cut(s)	1062, 1136, 1730, 1742
BsmI	GAATGC	5 cut(s)	1246, 1291, 1684, 1686, 1764
BsnI	GGCC	4 cut(s)	894, 996, 1597, 1660
Bso31I	GGTCTC	1 cut(s)	456
Bsp1286I	GDGCHC	3 cut(s)	535, 960, 1620
Bsp13I	TCCGGA	1 cut(s)	960
Bsp1407I	TGTACA	4 cut(s)	419, 1102, 1365, 1495
Bsp143I	GATC	9 cut(s)	69, 354, 492, 802, 865, 1270, 1375, 1513, 1794
Bsp1720I	GCTNAGC	1 cut(s)	51
Bsp19I	CCATGG	1 cut(s)	538
BspACI	CCGC	2 cut(s)	1205, 1835
BspANI	GGCC	4 cut(s)	894, 996, 1597, 1660
BspCNI	CTCAG	4 cut(s)	43, 94, 157, 1636
BspDI	ATCGAT	1 cut(s)	126
BspEI	TCCGGA	1 cut(s)	960
BspHI	TCATGA	1 cut(s)	1168
BspLI	GGNNCC	7 cut(s)	62, 306, 867, 1617, 1659, 1730, 1746
BspMAI	CTGCAG	2 cut(s)	281, 834
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	4 cut(s)	797, 860, 873, 1370
BspQI	GCTCTTC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	1615
BspTNI	GGTCTC	1 cut(s)	456
BsrDI	GCAATG	2 cut(s)	1346, 1667
BsrGI	TGTACA	4 cut(s)	419, 1102, 1365, 1495
BsrI	ACTGG	7 cut(s)	576, 695, 1123, 1363, 1474, 1495, 1813
BssECI	CCNNGG	6 cut(s)	308, 538, 610, 765, 1592, 1611
BssMI	GATC	9 cut(s)	69, 354, 492, 802, 865, 1270, 1375, 1513, 1794
BssT1I	CCWWGG	2 cut(s)	538, 765
Bst2UI	CCWGG	7 cut(s)	309, 449, 1246, 1353, 1545, 1594, 1613
Bst4CI	ACNGT	5 cut(s)	232, 370, 426, 526, 759
Bst6I	CTCTTC	3 cut(s)	19, 454, 1608
BstAUI	TGTACA	4 cut(s)	419, 1102, 1365, 1495
BstC8I	GCNNGC	3 cut(s)	922, 1068, 1662
BstDEI	CTNAG	5 cut(s)	51, 102, 165, 262, 1623
BstDSI	CCRYGG	2 cut(s)	538, 610
BstF5I	GGATG	1 cut(s)	707
BstH2I	RGCGCY	1 cut(s)	977
BstHHI	GCGC	2 cut(s)	976, 1159
BstKTI	GATC	9 cut(s)	72, 357, 495, 805, 868, 1273, 1378, 1516, 1797
BstMAI	GTCTC	3 cut(s)	456, 722, 1579
BstMBI	GATC	9 cut(s)	69, 354, 492, 802, 865, 1270, 1375, 1513, 1794
BstNI	CCWGG	7 cut(s)	309, 449, 1246, 1353, 1545, 1594, 1613
BstNSI	RCATGY	2 cut(s)	1366, 1502
BstSCI	CCNGG	8 cut(s)	307, 447, 979, 1244, 1351, 1543, 1592, 1611
BstSFI	CTRYAG	4 cut(s)	277, 620, 649, 830
BstSLI	GKGCMC	2 cut(s)	535, 1620
BstV2I	GAAGAC	1 cut(s)	264
BstX2I	RGATCY	3 cut(s)	69, 802, 865
BstXI	CCANNNNNNTGG	1 cut(s)	455
BstYI	RGATCY	3 cut(s)	69, 802, 865
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	4 cut(s)	894, 996, 1597, 1660
BsuTUI	ATCGAT	1 cut(s)	126
BtgI	CCRYGG	2 cut(s)	538, 610
BtsCI	GGATG	1 cut(s)	707
BtsI	GCAGTG	1 cut(s)	1166
BtsIMutI	CAGTG	6 cut(s)	366, 422, 569, 1116, 1166, 1263
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	3 cut(s)	922, 1068, 1662
CaiI	CAGNNNCTG	1 cut(s)	1358
CciI	TCATGA	1 cut(s)	1168
CfoI	GCGC	2 cut(s)	976, 1159
Cfr13I	GGNCC	7 cut(s)	61, 445, 614, 692, 1658, 1729, 1744
ClaI	ATCGAT	1 cut(s)	126
CsiI	ACCWGGT	1 cut(s)	447
Csp6I	GTAC	8 cut(s)	233, 420, 1076, 1103, 1366, 1488, 1496, 1775
CviAII	CATG	5 cut(s)	539, 1169, 1236, 1363, 1499
CviQI	GTAC	8 cut(s)	233, 420, 1076, 1103, 1366, 1488, 1496, 1775
DdeI	CTNAG	5 cut(s)	51, 102, 165, 262, 1623
DpnI	GATC	9 cut(s)	71, 356, 494, 804, 867, 1272, 1377, 1515, 1796
DpnII	GATC	9 cut(s)	69, 354, 492, 802, 865, 1270, 1375, 1513, 1794
DraI	TTTAAA	3 cut(s)	195, 475, 1032
DraIII	CACNNNGTG	1 cut(s)	611
EaeI	YGGCCR	2 cut(s)	994, 1595
Eam1104I	CTCTTC	3 cut(s)	19, 454, 1608
EarI	CTCTTC	3 cut(s)	19, 454, 1608
EciI	GGCGGA	2 cut(s)	1194, 1824
Ecl136II	GAGCTC	1 cut(s)	958
Eco130I	CCWWGG	2 cut(s)	538, 765
Eco24I	GRGCYC	1 cut(s)	960
Eco31I	GGTCTC	1 cut(s)	456
Eco47I	GGWCC	6 cut(s)	61, 445, 614, 692, 1729, 1744
Eco47III	AGCGCT	1 cut(s)	975
Eco53kI	GAGCTC	1 cut(s)	958
Eco57I	CTGAAG	1 cut(s)	891
EcoICRI	GAGCTC	1 cut(s)	958
EcoO109I	RGGNCCY	3 cut(s)	1658, 1729, 1744
EcoRI	GAATTC	2 cut(s)	836, 966
EcoRII	CCWGG	7 cut(s)	307, 447, 1244, 1351, 1543, 1592, 1611
EcoT14I	CCWWGG	2 cut(s)	538, 765
EcoT22I	ATGCAT	3 cut(s)	1291, 1297, 1686
EcoT38I	GRGCYC	1 cut(s)	960
ErhI	CCWWGG	2 cut(s)	538, 765
FaeI	CATG	5 cut(s)	542, 1172, 1239, 1366, 1502
FaqI	GGGAC	4 cut(s)	1062, 1136, 1730, 1742
FatI	CATG	5 cut(s)	538, 1168, 1235, 1362, 1498
FauNDI	CATATG	3 cut(s)	556, 1291, 1720
FbaI	TGATCA	2 cut(s)	492, 1270
FokI	GGATG	1 cut(s)	694
FriOI	GRGCYC	1 cut(s)	960
FspBI	CTAG	6 cut(s)	267, 563, 825, 890, 971, 1725
FspI	TGCGCA	1 cut(s)	1158
GlaI	GCGC	2 cut(s)	975, 1158
GsaI	CCCAGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	455
HaeII	RGCGCY	1 cut(s)	977
HaeIII	GGCC	4 cut(s)	894, 996, 1597, 1660
HapII	CCGG	2 cut(s)	961, 980
HhaI	GCGC	2 cut(s)	976, 1159
Hin1II	CATG	5 cut(s)	542, 1172, 1239, 1366, 1502
Hin6I	GCGC	2 cut(s)	974, 1157
HinP1I	GCGC	2 cut(s)	974, 1157
HincII	GTYRAC	3 cut(s)	45, 1471, 1769
HindII	GTYRAC	3 cut(s)	45, 1471, 1769
HindIII	AAGCTT	3 cut(s)	498, 1177, 1643
HinfI	GANTC	4 cut(s)	813, 1381, 1427, 1706
HpaI	GTTAAC	1 cut(s)	1471
HpaII	CCGG	2 cut(s)	961, 980
HphI	GGTGA	5 cut(s)	275, 305, 754, 995, 1456
Hpy188III	TCNNGA	6 cut(s)	434, 490, 909, 961, 1169, 1222
HpyAV	CCTTC	5 cut(s)	296, 1221, 1413, 1735, 1848
HpyCH4III	ACNGT	5 cut(s)	232, 370, 426, 526, 759
HpyCH4IV	ACGT	3 cut(s)	200, 858, 1777
HpyF3I	CTNAG	5 cut(s)	51, 102, 165, 262, 1623
HpySE526I	ACGT	3 cut(s)	200, 858, 1777
Hsp92II	CATG	5 cut(s)	542, 1172, 1239, 1366, 1502
HspAI	GCGC	2 cut(s)	974, 1157
Kpn2I	TCCGGA	1 cut(s)	960
Ksp22I	TGATCA	2 cut(s)	492, 1270
KspAI	GTTAAC	1 cut(s)	1471
Kzo9I	GATC	9 cut(s)	69, 354, 492, 802, 865, 1270, 1375, 1513, 1794
LguI	GCTCTTC	1 cut(s)	19
LmnI	GCTCC	3 cut(s)	118, 436, 963
LweI	GCATC	2 cut(s)	687, 1673
MabI	ACCWGGT	1 cut(s)	447
MaeI	CTAG	6 cut(s)	267, 563, 825, 890, 971, 1725
MaeII	ACGT	3 cut(s)	200, 858, 1777
MaeIII	GTNAC	4 cut(s)	281, 901, 1024, 1501
MalI	GATC	9 cut(s)	71, 356, 494, 804, 867, 1272, 1377, 1515, 1796
MboI	GATC	9 cut(s)	69, 354, 492, 802, 865, 1270, 1375, 1513, 1794
MflI	RGATCY	3 cut(s)	69, 802, 865
MhlI	GDGCHC	3 cut(s)	535, 960, 1620
MlsI	TGGCCA	2 cut(s)	996, 1597
MluCI	AATT	6 cut(s)	656, 670, 751, 770, 836, 966
MluNI	TGGCCA	2 cut(s)	996, 1597
MlyI	GAGTC	2 cut(s)	1390, 1436
MmeI	TCCRAC	2 cut(s)	436, 1797
Mox20I	TGGCCA	2 cut(s)	996, 1597
Mph1103I	ATGCAT	3 cut(s)	1291, 1297, 1686
MroI	TCCGGA	1 cut(s)	960
MroXI	GAANNNNTTC	1 cut(s)	1684
MscI	TGGCCA	2 cut(s)	996, 1597
MseI	TTAA	8 cut(s)	194, 351, 399, 474, 717, 927, 1031, 1470
MslI	CAYNNNNRTG	1 cut(s)	1314
Msp20I	TGGCCA	2 cut(s)	996, 1597
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	2 cut(s)	961, 980
MspR9I	CCNGG	8 cut(s)	309, 449, 981, 1246, 1353, 1545, 1594, 1613
Mva1269I	GAATGC	5 cut(s)	1246, 1291, 1684, 1686, 1764
MvaI	CCWGG	7 cut(s)	309, 449, 1246, 1353, 1545, 1594, 1613
NciI	CCSGG	1 cut(s)	981
NcoI	CCATGG	1 cut(s)	538
NdeI	CATATG	3 cut(s)	556, 1291, 1720
NdeII	GATC	9 cut(s)	69, 354, 492, 802, 865, 1270, 1375, 1513, 1794
NlaIII	CATG	5 cut(s)	542, 1172, 1239, 1366, 1502
NlaIV	GGNNCC	7 cut(s)	62, 306, 867, 1617, 1659, 1730, 1746
NmuCI	GTSAC	2 cut(s)	281, 1024
NsbI	TGCGCA	1 cut(s)	1158
NsiI	ATGCAT	3 cut(s)	1291, 1297, 1686
NspI	RCATGY	2 cut(s)	1366, 1502
PagI	TCATGA	1 cut(s)	1168
PaqCI	CACCTGC	1 cut(s)	430
PciI	ACATGT	1 cut(s)	1498
PciSI	GCTCTTC	1 cut(s)	19
PctI	GAATGC	5 cut(s)	1246, 1291, 1684, 1686, 1764
PdmI	GAANNNNTTC	1 cut(s)	1684
PfeI	GAWTC	2 cut(s)	813, 1706
PflFI	GACNNNGTC	2 cut(s)	449, 1252
PflMI	CCANNNNNTGG	3 cut(s)	1085, 1251, 1358
PleI	GAGTC	2 cut(s)	1389, 1435
PpsI	GAGTC	2 cut(s)	1389, 1435
PpuMI	RGGWCCY	2 cut(s)	1729, 1744
PscI	ACATGT	1 cut(s)	1498
Psp124BI	GAGCTC	1 cut(s)	960
Psp5II	RGGWCCY	2 cut(s)	1729, 1744
Psp6I	CCWGG	7 cut(s)	307, 447, 1244, 1351, 1543, 1592, 1611
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	7 cut(s)	307, 447, 1244, 1351, 1543, 1592, 1611
PspN4I	GGNNCC	7 cut(s)	62, 306, 867, 1617, 1659, 1730, 1746
PspPI	GGNCC	7 cut(s)	61, 445, 614, 692, 1658, 1729, 1744
PspPPI	RGGWCCY	2 cut(s)	1729, 1744
PstI	CTGCAG	2 cut(s)	281, 834
PstNI	CAGNNNCTG	1 cut(s)	1358
PsuI	RGATCY	3 cut(s)	69, 802, 865
PsyI	GACNNNGTC	2 cut(s)	449, 1252
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	8 cut(s)	234, 421, 1077, 1104, 1367, 1489, 1497, 1776
RsaNI	GTAC	8 cut(s)	233, 420, 1076, 1103, 1366, 1488, 1496, 1775
RseI	CAYNNNNRTG	1 cut(s)	1314
SacI	GAGCTC	1 cut(s)	960
SapI	GCTCTTC	1 cut(s)	19
SaqAI	TTAA	8 cut(s)	194, 351, 399, 474, 717, 927, 1031, 1470
Sau3AI	GATC	9 cut(s)	69, 354, 492, 802, 865, 1270, 1375, 1513, 1794
Sau96I	GGNCC	7 cut(s)	61, 445, 614, 692, 1658, 1729, 1744
ScaI	AGTACT	2 cut(s)	234, 1489
SchI	GAGTC	2 cut(s)	1390, 1436
ScrFI	CCNGG	8 cut(s)	309, 449, 981, 1246, 1353, 1545, 1594, 1613
SduI	GDGCHC	3 cut(s)	535, 960, 1620
SexAI	ACCWGGT	1 cut(s)	447
SfaNI	GCATC	2 cut(s)	687, 1673
SfcI	CTRYAG	4 cut(s)	277, 620, 649, 830
SinI	GGWCC	6 cut(s)	61, 445, 614, 692, 1729, 1744
SmiMI	CAYNNNNRTG	1 cut(s)	1314
SmlI	CTYRAG	2 cut(s)	1215, 1523
SmoI	CTYRAG	2 cut(s)	1215, 1523
Sse9I	AATT	6 cut(s)	656, 670, 751, 770, 836, 966
SsiI	CCGC	2 cut(s)	1205, 1835
SspI	AATATT	1 cut(s)	1149
SspMI	CTAG	6 cut(s)	267, 563, 825, 890, 971, 1725
SstI	GAGCTC	1 cut(s)	960
StyD4I	CCNGG	8 cut(s)	307, 447, 979, 1244, 1351, 1543, 1592, 1611
StyI	CCWWGG	2 cut(s)	538, 765
TaaI	ACNGT	5 cut(s)	232, 370, 426, 526, 759
TaiI	ACGT	3 cut(s)	203, 861, 1780
TaqI	TCGA	1 cut(s)	126
TasI	AATT	6 cut(s)	656, 670, 751, 770, 836, 966
TatI	WGTACW	6 cut(s)	232, 419, 1102, 1365, 1487, 1495
TfiI	GAWTC	2 cut(s)	813, 1706
Tru1I	TTAA	8 cut(s)	194, 351, 399, 474, 717, 927, 1031, 1470
Tru9I	TTAA	8 cut(s)	194, 351, 399, 474, 717, 927, 1031, 1470
TscAI	CASTG	6 cut(s)	373, 429, 576, 1123, 1166, 1263
TseFI	GTSAC	2 cut(s)	281, 1024
Tsp45I	GTSAC	2 cut(s)	281, 1024
TspDTI	ATGAA	9 cut(s)	384, 587, 591, 620, 1157, 1188, 1298, 1466, 1707
TspGWI	ACGGA	2 cut(s)	599, 700
TspRI	CASTG	6 cut(s)	373, 429, 576, 1123, 1166, 1263
Tth111I	GACNNNGTC	2 cut(s)	449, 1252
Van91I	CCANNNNNTGG	3 cut(s)	1085, 1251, 1358
VneI	GTGCAC	1 cut(s)	531
VpaK11BI	GGWCC	6 cut(s)	61, 445, 614, 692, 1729, 1744
XapI	RAATTY	5 cut(s)	656, 751, 770, 836, 966
XceI	RCATGY	2 cut(s)	1366, 1502
XmnI	GAANNNNTTC	1 cut(s)	1684
XspI	CTAG	6 cut(s)	267, 563, 825, 890, 971, 1725
ZrmI	AGTACT	2 cut(s)	234, 1489
Zsp2I	ATGCAT	3 cut(s)	1291, 1297, 1686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.