Rw1G033220

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001135
Physical Location & Seq
Forward (+)
61336788 .. 61343876
7089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G033220.1

Sequence Viewer

Length: 1260 bp
ATGGAAGTTTGCTCTTCTTCTGAAATATCAATAGATAAATGGTTGACAGCTGAGCATAGGGTCCAAGAGATCTTATGGGCTGTTCAACCAAATGTAGCCTCTGAGTGGAGGAGGAGGGAGCTGATCGATTATGTTCAAAGGATAATCAAAGGTCATTTCGGAACTGAGGTGTTGTCCTTTGGTTCAGTTCCTTTAAAAACGTATCTCCCTGATGGAGATATTGATTTGACAGTACTCTGTCATCGGAAGCAGGAGGAAGACTTAGCTAGGGCTATCTGCAGTCACCTTCAAGGTGAACCAAAGGAACCTGGGTTCTTGGTTGAAGATGTTAGATATGTTTATGCAAAGGTTAAGATCATAAAATGCACTGTGAATAATATAGCAGTTGATATTTCATTTAATCAGGTGGCTGGGCTGTGTACACTATGCTTTCTGGAGCAGGCGGACCAGGTCGTTGGAAGAGACCACCTTTTTAAAAAGAGTATAATCTTGATCAAAGCTTGGTGCTATTATGAGAGCCGAACCGTTGGTGCACCCCATGGCTTGATTTCAACATATGCACTAGAAACACTGGTCTTGTATATCATCAATCTCTTTCATTCATCACTCCGTGGACCTCTACAGGTTCTTCATAGATTTTTGGAATACTATAGCAAATTTGATTGGACAAATTATTGCATCAGTATAAATGGTCCAGTTTCCTTATCATCCGTTCTTAAAATCAGAGAGACACCAGAAAATGAGGGGGAGAATTTACTGTTCACCAAGGAATTTTTGAAGAAATGTAGAGTTGCATTTTCAGATCCAAGAAGAATCAGCGAAGCTAGACTGCAGGAATTCCCAATCAAGTGCTTCAACGTAGTGGATCCTCTAAAAGACAACAACAATCTAGGCCGTAGTGTTACTTCAGGAAACTTCGCTCGCATTAAATCTGCTTTTGCATTTGGAGAAAATGAGCTCCGGAGAATTCTAGCGCTACCAGGTGAAAGCATTGGCCACAAACTTCAAAAAGATTTTTTTCCCGTCACTTTAAATAGGAATGGGAGGGGACAAAGACCAGATTTGCAGCTCTTGTACCAGCATTTGGTAGTGGAAGATATGTACAATCTAACCTCACTGGGGACTTTGATTATTATTATGGGGGAATATTGTATGCTCAGTGGCTTCATGATGAAAGCTTACATCTTTCTTCACACCCAAGTCCGCCACCTTCTCAAGTCCAGAATAACACCACATGGAATGCCAGGACTTGGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2 PAP_assoc

Protein Analysis

419

Amino Acids

47.89

Weight (kDa)

8.39

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTPAP-like_central PF22600 21 - 139 2.6e-12 Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1 PF26180 152 - 343 3.8e-85 PAP/OAS1 substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1084, 1250
AccIII TCCGGA 1 cut(s) 960
AciI CCGC 2 cut(s) 443, 1204
AclWI GGATC 3 cut(s) 797, 860, 873
AcoI YGGCCR 1 cut(s) 994
AcsI RAATTY 5 cut(s) 656, 751, 770, 836, 966
AcuI CTGAAG 1 cut(s) 891
AdeI CACNNNGTG 1 cut(s) 611
AfaI GTAC 4 cut(s) 234, 421, 1076, 1103
AfeI AGCGCT 1 cut(s) 975
AfiI CCNNNNNNNGG 4 cut(s) 105, 1084, 1119, 1250
AgsI TTSAA 8 cut(s) 86, 137, 290, 323, 552, 778, 856, 1007
AjnI CCWGG 4 cut(s) 307, 447, 979, 1243
AloI GAACNNNNNNTCC 2 cut(s) 296, 328
AluBI AGCT 8 cut(s) 50, 121, 266, 500, 824, 958, 1069, 1178
AluI AGCT 8 cut(s) 50, 121, 266, 500, 824, 958, 1069, 1178
Alw21I GWGCWC 2 cut(s) 535, 960
Alw26I GTCTC 2 cut(s) 456, 722
Alw44I GTGCAC 1 cut(s) 531
AlwI GGATC 3 cut(s) 797, 860, 873
Aor13HI TCCGGA 1 cut(s) 960
Aor51HI AGCGCT 1 cut(s) 975
AoxI GGCC 2 cut(s) 892, 994
ApaLI GTGCAC 1 cut(s) 531
ApeKI GCWGC 1 cut(s) 1066
ApoI RAATTY 5 cut(s) 656, 751, 770, 836, 966
AspLEI GCGC 1 cut(s) 976
AspS9I GGNCC 4 cut(s) 61, 445, 614, 692
AsuHPI GGTGA 4 cut(s) 275, 305, 754, 995
AvaII GGWCC 4 cut(s) 61, 445, 614, 692
BaeGI GKGCMC 1 cut(s) 535
BalI TGGCCA 1 cut(s) 996
BamHI GGATCC 1 cut(s) 865
BanII GRGCYC 1 cut(s) 960
BarI GAAGNNNNNNTAC 2 cut(s) 889, 921
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 2 cut(s) 535, 960
BbvI GCAGC 1 cut(s) 1078
BccI CCATC 1 cut(s) 206
BceAI ACGGC 1 cut(s) 879
BciT130I CCWGG 4 cut(s) 309, 449, 981, 1245
BclI TGATCA 1 cut(s) 492
BcoDI GTCTC 2 cut(s) 456, 722
BfaI CTAG 5 cut(s) 267, 563, 825, 890, 971
BfmI CTRYAG 4 cut(s) 277, 620, 649, 830
BfoI RGCGCY 1 cut(s) 977
BglII AGATCT 1 cut(s) 69
BisI GCNGC 1 cut(s) 1067
BlpI GCTNAGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 1068
BmcAI AGTACT 1 cut(s) 234
Bme1390I CCNGG 4 cut(s) 309, 449, 981, 1245
Bme18I GGWCC 4 cut(s) 61, 445, 614, 692
BmgT120I GGNCC 4 cut(s) 61, 445, 614, 692
BmiI GGNNCC 3 cut(s) 62, 306, 867
BmrFI CCNGG 4 cut(s) 309, 449, 981, 1245
BmrI ACTGGG 1 cut(s) 1127
BmsI GCATC 1 cut(s) 687
BmuI ACTGGG 1 cut(s) 1127
BpiI GAAGAC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 455
Bpu1102I GCTNAGC 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 1199
Bsa29I ATCGAT 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 4 cut(s) 308, 538, 610, 765
BsaWI WCCGGW 1 cut(s) 960
Bsc4I CCNNNNNNNGG 4 cut(s) 105, 1084, 1119, 1250
Bse1I ACTGG 3 cut(s) 576, 695, 1122
BseAI TCCGGA 1 cut(s) 960
BseBI CCWGG 4 cut(s) 309, 449, 981, 1245
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 4 cut(s) 308, 538, 610, 765
BseGI GGATG 1 cut(s) 707
BseLI CCNNNNNNNGG 4 cut(s) 105, 1084, 1119, 1250
BseMII CTCAG 4 cut(s) 42, 93, 156, 1171
BseNI ACTGG 3 cut(s) 576, 695, 1122
BseRI GAGGAG 2 cut(s) 124, 127
BseSI GKGCMC 1 cut(s) 535
BseXI GCAGC 1 cut(s) 1078
BseYI CCCAGC 1 cut(s) 410
BshFI GGCC 2 cut(s) 894, 996
BshVI ATCGAT 1 cut(s) 126
BsiHKAI GWGCWC 2 cut(s) 535, 960
BsiSI CCGG 1 cut(s) 961
BslFI GGGAC 2 cut(s) 1062, 1135
BslI CCNNNNNNNGG 4 cut(s) 105, 1084, 1119, 1250
BsmAI GTCTC 2 cut(s) 456, 722
BsmFI GGGAC 2 cut(s) 1062, 1135
BsmI GAATGC 1 cut(s) 1245
BsnI GGCC 2 cut(s) 894, 996
Bso31I GGTCTC 1 cut(s) 456
Bsp1286I GDGCHC 2 cut(s) 535, 960
Bsp13I TCCGGA 1 cut(s) 960
Bsp1407I TGTACA 2 cut(s) 419, 1101
Bsp143I GATC 6 cut(s) 69, 123, 354, 492, 802, 865
Bsp1720I GCTNAGC 1 cut(s) 51
Bsp19I CCATGG 1 cut(s) 538
BspACI CCGC 2 cut(s) 443, 1204
BspANI GGCC 2 cut(s) 894, 996
BspCNI CTCAG 4 cut(s) 43, 94, 157, 1170
BspDI ATCGAT 1 cut(s) 126
BspEI TCCGGA 1 cut(s) 960
BspHI TCATGA 1 cut(s) 1167
BspLI GGNNCC 3 cut(s) 62, 306, 867
BspMAI CTGCAG 2 cut(s) 281, 834
BspPI GGATC 3 cut(s) 797, 860, 873
BspQI GCTCTTC 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 456
BsrGI TGTACA 2 cut(s) 419, 1101
BsrI ACTGG 3 cut(s) 576, 695, 1122
BssECI CCNNGG 4 cut(s) 308, 538, 610, 765
BssMI GATC 6 cut(s) 69, 123, 354, 492, 802, 865
BssT1I CCWWGG 2 cut(s) 538, 765
Bst2UI CCWGG 4 cut(s) 309, 449, 981, 1245
Bst4CI ACNGT 4 cut(s) 232, 370, 526, 759
Bst6I CTCTTC 2 cut(s) 19, 454
BstAUI TGTACA 2 cut(s) 419, 1101
BstC8I GCNNGC 2 cut(s) 441, 922
BstDEI CTNAG 5 cut(s) 51, 102, 165, 262, 1157
BstDSI CCRYGG 2 cut(s) 538, 610
BstF5I GGATG 1 cut(s) 707
BstH2I RGCGCY 1 cut(s) 977
BstHHI GCGC 1 cut(s) 976
BstKTI GATC 6 cut(s) 72, 126, 357, 495, 805, 868
BstMAI GTCTC 2 cut(s) 456, 722
BstMBI GATC 6 cut(s) 69, 123, 354, 492, 802, 865
BstNI CCWGG 4 cut(s) 309, 449, 981, 1245
BstSCI CCNGG 4 cut(s) 307, 447, 979, 1243
BstSFI CTRYAG 4 cut(s) 277, 620, 649, 830
BstSLI GKGCMC 1 cut(s) 535
BstV1I GCAGC 1 cut(s) 1078
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 3 cut(s) 69, 802, 865
BstXI CCANNNNNNTGG 1 cut(s) 455
BstYI RGATCY 3 cut(s) 69, 802, 865
Bsu15I ATCGAT 1 cut(s) 126
BsuRI GGCC 2 cut(s) 894, 996
BsuTUI ATCGAT 1 cut(s) 126
BtgI CCRYGG 2 cut(s) 538, 610
BtsCI GGATG 1 cut(s) 707
BtsIMutI CAGTG 4 cut(s) 366, 569, 1115, 1165
Cac8I GCNNGC 2 cut(s) 441, 922
CciI TCATGA 1 cut(s) 1167
CfoI GCGC 1 cut(s) 976
Cfr13I GGNCC 4 cut(s) 61, 445, 614, 692
ClaI ATCGAT 1 cut(s) 126
CsiI ACCWGGT 2 cut(s) 447, 979
Csp6I GTAC 4 cut(s) 233, 420, 1075, 1102
CviAII CATG 3 cut(s) 539, 1168, 1235
CviQI GTAC 4 cut(s) 233, 420, 1075, 1102
DdeI CTNAG 5 cut(s) 51, 102, 165, 262, 1157
DpnI GATC 6 cut(s) 71, 125, 356, 494, 804, 867
DpnII GATC 6 cut(s) 69, 123, 354, 492, 802, 865
DraI TTTAAA 3 cut(s) 195, 475, 1032
DraIII CACNNNGTG 1 cut(s) 611
EaeI YGGCCR 1 cut(s) 994
Eam1104I CTCTTC 2 cut(s) 19, 454
EarI CTCTTC 2 cut(s) 19, 454
EciI GGCGGA 2 cut(s) 458, 1193
Ecl136II GAGCTC 1 cut(s) 958
Eco130I CCWWGG 2 cut(s) 538, 765
Eco24I GRGCYC 1 cut(s) 960
Eco31I GGTCTC 1 cut(s) 456
Eco47I GGWCC 4 cut(s) 61, 445, 614, 692
Eco47III AGCGCT 1 cut(s) 975
Eco53kI GAGCTC 1 cut(s) 958
Eco57I CTGAAG 1 cut(s) 891
EcoICRI GAGCTC 1 cut(s) 958
EcoRI GAATTC 2 cut(s) 836, 966
EcoRII CCWGG 4 cut(s) 307, 447, 979, 1243
EcoT14I CCWWGG 2 cut(s) 538, 765
EcoT38I GRGCYC 1 cut(s) 960
ErhI CCWWGG 2 cut(s) 538, 765
FaeI CATG 3 cut(s) 542, 1171, 1238
FaqI GGGAC 2 cut(s) 1062, 1135
FatI CATG 3 cut(s) 538, 1167, 1234
FauNDI CATATG 1 cut(s) 556
FbaI TGATCA 1 cut(s) 492
Fnu4HI GCNGC 1 cut(s) 1067
FokI GGATG 1 cut(s) 694
FriOI GRGCYC 1 cut(s) 960
Fsp4HI GCNGC 1 cut(s) 1067
FspBI CTAG 5 cut(s) 267, 563, 825, 890, 971
GlaI GCGC 1 cut(s) 975
GluI GCNGC 1 cut(s) 1067
GsaI CCCAGC 1 cut(s) 414
GsuI CTGGAG 1 cut(s) 455
HaeII RGCGCY 1 cut(s) 977
HaeIII GGCC 2 cut(s) 894, 996
HapII CCGG 1 cut(s) 961
HhaI GCGC 1 cut(s) 976
Hin1II CATG 3 cut(s) 542, 1171, 1238
Hin6I GCGC 1 cut(s) 974
HinP1I GCGC 1 cut(s) 974
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HindIII AAGCTT 2 cut(s) 498, 1176
HinfI GANTC 1 cut(s) 813
HpaII CCGG 1 cut(s) 961
HphI GGTGA 4 cut(s) 275, 305, 754, 995
Hpy166II GTNNAC 7 cut(s) 45, 296, 420, 422, 533, 614, 762
Hpy188I TCNGA 6 cut(s) 22, 103, 161, 246, 725, 802
Hpy188III TCNNGA 6 cut(s) 434, 490, 909, 961, 1168, 1221
Hpy8I GTNNAC 7 cut(s) 45, 296, 420, 422, 533, 614, 762
HpyAV CCTTC 2 cut(s) 296, 1220
HpyCH4III ACNGT 4 cut(s) 232, 370, 526, 759
HpyCH4IV ACGT 2 cut(s) 200, 858
HpyF3I CTNAG 5 cut(s) 51, 102, 165, 262, 1157
HpySE526I ACGT 2 cut(s) 200, 858
Hsp92II CATG 3 cut(s) 542, 1171, 1238
HspAI GCGC 1 cut(s) 974
Kpn2I TCCGGA 1 cut(s) 960
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 6 cut(s) 69, 123, 354, 492, 802, 865
LguI GCTCTTC 1 cut(s) 19
LmnI GCTCC 3 cut(s) 118, 436, 963
Lsp1109I GCAGC 1 cut(s) 1078
LweI GCATC 1 cut(s) 687
MabI ACCWGGT 2 cut(s) 447, 979
MaeI CTAG 5 cut(s) 267, 563, 825, 890, 971
MaeII ACGT 2 cut(s) 200, 858
MaeIII GTNAC 3 cut(s) 281, 901, 1024
MalI GATC 6 cut(s) 71, 125, 356, 494, 804, 867
MboI GATC 6 cut(s) 69, 123, 354, 492, 802, 865
MflI RGATCY 3 cut(s) 69, 802, 865
MhlI GDGCHC 2 cut(s) 535, 960
MlsI TGGCCA 1 cut(s) 996
MluCI AATT 6 cut(s) 656, 670, 751, 770, 836, 966
MluNI TGGCCA 1 cut(s) 996
MmeI TCCRAC 1 cut(s) 436
Mox20I TGGCCA 1 cut(s) 996
MroI TCCGGA 1 cut(s) 960
MscI TGGCCA 1 cut(s) 996
MseI TTAA 7 cut(s) 194, 351, 399, 474, 717, 927, 1031
Msp20I TGGCCA 1 cut(s) 996
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 961
MspR9I CCNGG 4 cut(s) 309, 449, 981, 1245
Mva1269I GAATGC 1 cut(s) 1245
MvaI CCWGG 4 cut(s) 309, 449, 981, 1245
NcoI CCATGG 1 cut(s) 538
NdeI CATATG 1 cut(s) 556
NdeII GATC 6 cut(s) 69, 123, 354, 492, 802, 865
NlaIII CATG 3 cut(s) 542, 1171, 1238
NlaIV GGNNCC 3 cut(s) 62, 306, 867
NmuCI GTSAC 2 cut(s) 281, 1024
PagI TCATGA 1 cut(s) 1167
PciSI GCTCTTC 1 cut(s) 19
PctI GAATGC 1 cut(s) 1245
PfeI GAWTC 1 cut(s) 813
PflFI GACNNNGTC 2 cut(s) 449, 1251
PflMI CCANNNNNTGG 2 cut(s) 1084, 1250
PkrI GCNGC 1 cut(s) 1068
Psp124BI GAGCTC 1 cut(s) 960
Psp6I CCWGG 4 cut(s) 307, 447, 979, 1243
PspFI CCCAGC 1 cut(s) 410
PspGI CCWGG 4 cut(s) 307, 447, 979, 1243
PspN4I GGNNCC 3 cut(s) 62, 306, 867
PspPI GGNCC 4 cut(s) 61, 445, 614, 692
PstI CTGCAG 2 cut(s) 281, 834
PsuI RGATCY 3 cut(s) 69, 802, 865
PsyI GACNNNGTC 2 cut(s) 449, 1251
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 4 cut(s) 234, 421, 1076, 1103
RsaNI GTAC 4 cut(s) 233, 420, 1075, 1102
SacI GAGCTC 1 cut(s) 960
SapI GCTCTTC 1 cut(s) 19
SaqAI TTAA 7 cut(s) 194, 351, 399, 474, 717, 927, 1031
SatI GCNGC 1 cut(s) 1067
Sau3AI GATC 6 cut(s) 69, 123, 354, 492, 802, 865
Sau96I GGNCC 4 cut(s) 61, 445, 614, 692
ScaI AGTACT 1 cut(s) 234
ScrFI CCNGG 4 cut(s) 309, 449, 981, 1245
SduI GDGCHC 2 cut(s) 535, 960
SexAI ACCWGGT 2 cut(s) 447, 979
SfaNI GCATC 1 cut(s) 687
SfcI CTRYAG 4 cut(s) 277, 620, 649, 830
SinI GGWCC 4 cut(s) 61, 445, 614, 692
SmlI CTYRAG 1 cut(s) 1214
SmoI CTYRAG 1 cut(s) 1214
Sse9I AATT 6 cut(s) 656, 670, 751, 770, 836, 966
SsiI CCGC 2 cut(s) 443, 1204
SspI AATATT 1 cut(s) 1148
SspMI CTAG 5 cut(s) 267, 563, 825, 890, 971
SstI GAGCTC 1 cut(s) 960
StyD4I CCNGG 4 cut(s) 307, 447, 979, 1243
StyI CCWWGG 2 cut(s) 538, 765
TaaI ACNGT 4 cut(s) 232, 370, 526, 759
TaiI ACGT 2 cut(s) 203, 861
TaqI TCGA 1 cut(s) 126
TasI AATT 6 cut(s) 656, 670, 751, 770, 836, 966
TatI WGTACW 3 cut(s) 232, 419, 1101
TfiI GAWTC 1 cut(s) 813
Tru1I TTAA 7 cut(s) 194, 351, 399, 474, 717, 927, 1031
Tru9I TTAA 7 cut(s) 194, 351, 399, 474, 717, 927, 1031
TscAI CASTG 4 cut(s) 373, 576, 1122, 1165
TseFI GTSAC 2 cut(s) 281, 1024
TseI GCWGC 1 cut(s) 1066
Tsp45I GTSAC 2 cut(s) 281, 1024
TspDTI ATGAA 6 cut(s) 384, 587, 591, 620, 1156, 1187
TspGWI ACGGA 2 cut(s) 599, 700
TspRI CASTG 4 cut(s) 373, 576, 1122, 1165
Tth111I GACNNNGTC 2 cut(s) 449, 1251
Van91I CCANNNNNTGG 2 cut(s) 1084, 1250
VneI GTGCAC 1 cut(s) 531
VpaK11BI GGWCC 4 cut(s) 61, 445, 614, 692
XapI RAATTY 5 cut(s) 656, 751, 770, 836, 966
XspI CTAG 5 cut(s) 267, 563, 825, 890, 971
ZrmI AGTACT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.