Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001135

Physical Location & Seq

Genomic Coordinates Forward (+)

48320421 .. 48320933

Gene Structure 513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0368000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTACTCATTGAAGAACAAAATCATGATGAGGCAATAGCATATGGTGCAGCAGTTCAAGCTGCAGTCTTGGCAGGTGGGAACTTCTGTGGGAAACTTCAAGACTTCTCTCTCTTGGATATCACCCCTCTCTCACTTGGAGTGGATTGTACTGATACTAGTGACCCTCTCAACTTCAAGCAATTCATGAATGTGGTGATTCCAAGAAACTCTCGTATTCCCATCAAGAAGAAAAAGATCTTAGTAACTATCTATGACAACCAAAGTGCAGCTGCCTTACCTGTTTATGAGGGTGAGAGTAGAATACCCAAACAAAATAACTTATTATGTAAATTTTCACTTGATGGCATTCCTCCAGCTCCTAAAGGTGAAGCCAAATTTGATGTTTCCTTCGATATTGATGCAAATGGCATCTTCAGTGTCTCTGCCGAGGACATGTCCACAGGCCAAAAGAAGGGGATTACAATCAACAGTGATAGAAGAACTTTTGAAGGCATTGAGAATGTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

170

Amino Acids

18.54

Weight (kDa)

5.03

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	8 - 161	7.2e-41	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320
fragaria_vesca	FvH4_3g40330 FvH4_3g40330 FvH4_3g40330 FvH4_7g25750 FvH4_7g25750 FvH4_7g25750 FvH4_7g25750
malus_domestica	MD01G1165200.v1.1 MD03G1053200.v1.1 MD07G1232500.v1.1 MD11G1054900.v1.1
prunus_persica	Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.6G042500_v2.0.a1 Prupe.6G042500_v2.0.a1
pyrus_communis	pycom01g17910 pycom03g04230 pycom11g04480
rosa_chinensis	RchiOBHm_Chr1g0372011 RchiOBHm_Chr5g0072681
rosa_laevigata	RLG00000026928 RLG00000036325
rosa_multiflora	Rmu_sc0001755.1_g000036 Rmu_sc0003160.1_g000034
rosa_roxburghii	Rroxscaffold_1G00008460
rosa_rugosa	Rorug01G0367900 Rorug01G0368000 Rorug01G0368100 Rorug01G0368200 Rorug01G0368300 Rorug05G0419200 Rorug05G0419300
rosa_samantha	Rh1AG377600 Rh1BG341000 Rh1CG354200 Rh1DG372000 Rh5AG476200 Rh5BG496400 Rh5CG520200 Rh5DG508800
rosa_wichuraiana	Rw1G033220 Rw5G044220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	65
AcsI	RAATTY	2 cut(s)	332, 377
AcuI	CTGAAG	1 cut(s)	400
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	454
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	5 cut(s)	14, 59, 101, 178, 491
AhlI	ACTAGT	1 cut(s)	158
AluBI	AGCT	3 cut(s)	62, 272, 359
AluI	AGCT	3 cut(s)	62, 272, 359
Alw26I	GTCTC	1 cut(s)	427
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	4 cut(s)	50, 62, 269, 272
ApoI	RAATTY	2 cut(s)	332, 377
AsuHPI	GGTGA	4 cut(s)	115, 208, 305, 380
BbvI	GCAGC	4 cut(s)	49, 62, 259, 281
BccI	CCATC	2 cut(s)	230, 338
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BcoDI	GTCTC	1 cut(s)	427
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	65
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	4 cut(s)	51, 63, 270, 273
BlsI	GCNGC	4 cut(s)	52, 64, 271, 274
BmsI	GCATC	2 cut(s)	391, 420
BpmI	CTGGAG	1 cut(s)	339
BsaBI	GATNNNNATC	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse8I	GATNNNNATC	1 cut(s)	464
BseDI	CCNNGG	1 cut(s)	429
BseJI	GATNNNNATC	1 cut(s)	464
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseXI	GCAGC	4 cut(s)	49, 62, 259, 281
BsgI	GTGCAG	2 cut(s)	69, 288
BshFI	GGCC	1 cut(s)	447
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	1 cut(s)	427
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	447
Bsp143I	GATC	1 cut(s)	237
BspANI	GGCC	1 cut(s)	447
BspHI	TCATGA	2 cut(s)	25, 186
BspMAI	CTGCAG	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	473
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstDEI	CTNAG	1 cut(s)	241
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 59, 71
BstNSI	RCATGY	1 cut(s)	439
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	4 cut(s)	49, 62, 259, 281
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	447
BtsIMutI	CAGTG	2 cut(s)	424, 478
BveI	ACCTGC	1 cut(s)	65
CciI	TCATGA	2 cut(s)	25, 186
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	3 cut(s)	26, 187, 436
CviJI	RGCY	5 cut(s)	62, 272, 359, 374, 447
CviKI_1	RGCY	5 cut(s)	62, 272, 359, 374, 447
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	1 cut(s)	241
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	121
FaeI	CATG	3 cut(s)	29, 190, 439
FaiI	YATR	8 cut(s)	27, 43, 45, 188, 255, 288, 328, 437
FatI	CATG	3 cut(s)	25, 186, 435
FauNDI	CATATG	1 cut(s)	43
Fnu4HI	GCNGC	4 cut(s)	51, 63, 270, 273
Fsp4HI	GCNGC	4 cut(s)	51, 63, 270, 273
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	4 cut(s)	51, 63, 270, 273
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	447
Hin1II	CATG	3 cut(s)	29, 190, 439
HinfI	GANTC	1 cut(s)	199
HphI	GGTGA	4 cut(s)	115, 208, 305, 380
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188III	TCNNGA	4 cut(s)	26, 101, 187, 226
Hpy8I	GTNNAC	1 cut(s)	441
HpyAV	CCTTC	3 cut(s)	400, 448, 485
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4V	TGCA	4 cut(s)	50, 65, 269, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 59, 71
HpyF3I	CTNAG	1 cut(s)	241
Hsp92II	CATG	3 cut(s)	29, 190, 439
Kzo9I	GATC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	4 cut(s)	60, 294, 369, 429
Lsp1109I	GCAGC	4 cut(s)	49, 62, 259, 281
LweI	GCATC	2 cut(s)	391, 420
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	3 cut(s)	3, 161, 244
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	4 cut(s)	26, 241, 406, 492
MflI	RGATCY	1 cut(s)	237
MluCI	AATT	3 cut(s)	182, 332, 377
MnlI	CCTC	7 cut(s)	25, 138, 177, 283, 363, 424, 501
MslI	CAYNNNNRTG	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	348
MwoI	GCNNNNNNNGC	3 cut(s)	47, 59, 71
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	3 cut(s)	29, 190, 439
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	161
NspI	RCATGY	1 cut(s)	439
PagI	TCATGA	2 cut(s)	25, 186
PaqCI	CACCTGC	1 cut(s)	65
PciI	ACATGT	1 cut(s)	435
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	4 cut(s)	52, 64, 271, 274
PscI	ACATGT	1 cut(s)	435
PstI	CTGCAG	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	237
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
RseI	CAYNNNNRTG	1 cut(s)	191
SatI	GCNGC	4 cut(s)	51, 63, 270, 273
Sau3AI	GATC	1 cut(s)	237
SetI	ASST	7 cut(s)	64, 79, 274, 283, 361, 370, 512
SfaNI	GCATC	2 cut(s)	391, 420
SfcI	CTRYAG	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	191
SpeI	ACTAGT	1 cut(s)	158
Sse9I	AATT	3 cut(s)	182, 332, 377
SspMI	CTAG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	473
TaqI	TCGA	1 cut(s)	393
TasI	AATT	3 cut(s)	182, 332, 377
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	199
TscAI	CASTG	2 cut(s)	424, 478
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	4 cut(s)	50, 62, 269, 272
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	2 cut(s)	175, 203
TspRI	CASTG	2 cut(s)	424, 478
XapI	RAATTY	2 cut(s)	332, 377
XceI	RCATGY	1 cut(s)	439
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.