isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 388 |
| AccB1I | GGYRCC | 1 cut(s) | 688 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1154 |
| AccII | CGCG | 1 cut(s) | 209 |
| AccIII | TCCGGA | 1 cut(s) | 673 |
| AciI | CCGC | 5 cut(s) | 70, 209, 237, 344, 1501 |
| AclI | AACGTT | 1 cut(s) | 527 |
| AclWI | GGATC | 6 cut(s) | 483, 496, 755, 818, 831, 1561 |
| AcoI | YGGCCR | 1 cut(s) | 1453 |
| AcsI | RAATTY | 4 cut(s) | 794, 968, 1217, 1523 |
| AcuI | CTGAAG | 2 cut(s) | 1077, 1539 |
| AcyI | GRCGYC | 1 cut(s) | 1592 |
| AdeI | CACNNNGTG | 1 cut(s) | 569 |
| AfaI | GTAC | 2 cut(s) | 379, 1715 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 53, 700, 1075, 1154, 1191, 1462 |
| AgsI | TTSAA | 7 cut(s) | 248, 358, 510, 965, 1507, 1780, 1813 |
| AjiI | CACGTC | 1 cut(s) | 1351 |
| AjnI | CCWGG | 2 cut(s) | 1185, 1537 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 40, 72 |
| AleI | CACNNNNGTG | 2 cut(s) | 1140, 1485 |
| AluBI | AGCT | 9 cut(s) | 224, 230, 458, 741, 782, 908, 934, 1204, 1582 |
| AluI | AGCT | 9 cut(s) | 224, 230, 458, 741, 782, 908, 934, 1204, 1582 |
| Alw21I | GWGCWC | 2 cut(s) | 910, 1147 |
| Alw26I | GTCTC | 2 cut(s) | 1599, 1751 |
| AlwI | GGATC | 6 cut(s) | 483, 496, 755, 818, 831, 1561 |
| Aor13HI | TCCGGA | 1 cut(s) | 673 |
| AoxI | GGCC | 3 cut(s) | 850, 1010, 1453 |
| ApeKI | GCWGC | 4 cut(s) | 341, 1201, 1289, 1771 |
| ApoI | RAATTY | 4 cut(s) | 794, 968, 1217, 1523 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1663 |
| AspLEI | GCGC | 1 cut(s) | 1201 |
| AspS9I | GGNCC | 6 cut(s) | 18, 572, 583, 650, 850, 1564 |
| AsuC2I | CCSGG | 1 cut(s) | 939 |
| AsuHPI | GGTGA | 6 cut(s) | 953, 1431, 1506, 1548, 1635, 1659 |
| AvaII | GGWCC | 5 cut(s) | 18, 572, 583, 650, 1564 |
| AxyI | CCTNAGG | 1 cut(s) | 901 |
| BaeGI | GKGCMC | 2 cut(s) | 304, 1337 |
| BalI | TGGCCA | 1 cut(s) | 1455 |
| BamHI | GGATCC | 2 cut(s) | 488, 823 |
| BanI | GGYRCC | 1 cut(s) | 688 |
| BanII | GRGCYC | 2 cut(s) | 375, 910 |
| BbsI | GAAGAC | 1 cut(s) | 121 |
| Bbv12I | GWGCWC | 2 cut(s) | 910, 1147 |
| BbvCI | CCTCAGC | 1 cut(s) | 9 |
| BbvI | GCAGC | 4 cut(s) | 353, 1213, 1276, 1783 |
| BccI | CCATC | 7 cut(s) | 164, 200, 207, 432, 1287, 1575, 1654 |
| BceAI | ACGGC | 1 cut(s) | 837 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1750, 1784 |
| BciT130I | CCWGG | 2 cut(s) | 1187, 1539 |
| BcnI | CCSGG | 1 cut(s) | 939 |
| BcoDI | GTCTC | 2 cut(s) | 1599, 1751 |
| BfaI | CTAG | 4 cut(s) | 521, 744, 1269, 1413 |
| BfmI | CTRYAG | 6 cut(s) | 225, 587, 607, 783, 984, 1671 |
| BfuAI | ACCTGC | 1 cut(s) | 388 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1261 |
| BglII | AGATCT | 2 cut(s) | 27, 1052 |
| BisI | GCNGC | 5 cut(s) | 342, 1202, 1290, 1501, 1772 |
| BlsI | GCNGC | 5 cut(s) | 343, 1203, 1291, 1502, 1773 |
| Bme1390I | CCNGG | 3 cut(s) | 939, 1187, 1539 |
| Bme18I | GGWCC | 5 cut(s) | 18, 572, 583, 650, 1564 |
| BmgBI | CACGTC | 1 cut(s) | 1351 |
| BmgT120I | GGNCC | 6 cut(s) | 18, 572, 583, 650, 850, 1564 |
| BmiI | GGNNCC | 5 cut(s) | 20, 490, 690, 825, 1611 |
| BmrFI | CCNGG | 3 cut(s) | 939, 1187, 1539 |
| BmsI | GCATC | 4 cut(s) | 569, 1273, 1283, 1414 |
| BpiI | GAAGAC | 1 cut(s) | 121 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 116, 148 |
| BpmI | CTGGAG | 3 cut(s) | 413, 1176, 1584 |
| Bpu10I | CCTNAGC | 1 cut(s) | 9 |
| BpuMI | CCSGG | 1 cut(s) | 939 |
| BsaHI | GRCGYC | 1 cut(s) | 1592 |
| BsaJI | CCNNGG | 3 cut(s) | 1185, 1382, 1605 |
| BsaWI | WCCGGW | 1 cut(s) | 673 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1242, 1272 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 53, 700, 1075, 1154, 1191, 1462 |
| Bse1I | ACTGG | 3 cut(s) | 653, 1214, 1788 |
| Bse21I | CCTNAGG | 1 cut(s) | 901 |
| BseAI | TCCGGA | 1 cut(s) | 673 |
| BseBI | CCWGG | 2 cut(s) | 1187, 1539 |
| BseDI | CCNNGG | 3 cut(s) | 1185, 1382, 1605 |
| BseGI | GGATG | 3 cut(s) | 1264, 1274, 1392 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 53, 700, 1075, 1154, 1191, 1462 |
| BseMII | CTCAG | 4 cut(s) | 51, 114, 156, 733 |
| BseNI | ACTGG | 3 cut(s) | 653, 1214, 1788 |
| BseRI | GAGGAG | 5 cut(s) | 227, 740, 1017, 1405, 1587 |
| BseSI | GKGCMC | 2 cut(s) | 304, 1337 |
| BseXI | GCAGC | 4 cut(s) | 353, 1213, 1276, 1783 |
| BseYI | CCCAGC | 1 cut(s) | 368 |
| BsgI | GTGCAG | 1 cut(s) | 975 |
| Bsh1236I | CGCG | 1 cut(s) | 209 |
| BshFI | GGCC | 3 cut(s) | 852, 1012, 1455 |
| BshNI | GGYRCC | 1 cut(s) | 688 |
| BsiHKAI | GWGCWC | 2 cut(s) | 910, 1147 |
| BsiSI | CCGG | 4 cut(s) | 478, 674, 938, 1261 |
| BslFI | GGGAC | 3 cut(s) | 131, 638, 1410 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 53, 700, 1075, 1154, 1191, 1462 |
| BsmAI | GTCTC | 2 cut(s) | 1599, 1751 |
| BsmBI | CGTCTC | 2 cut(s) | 1599, 1751 |
| BsmFI | GGGAC | 3 cut(s) | 131, 638, 1410 |
| BsmI | GAATGC | 4 cut(s) | 1027, 1186, 1639, 1665 |
| BsnI | GGCC | 3 cut(s) | 852, 1012, 1455 |
| Bsp1286I | GDGCHC | 5 cut(s) | 304, 375, 910, 1147, 1337 |
| Bsp13I | TCCGGA | 1 cut(s) | 673 |
| Bsp1407I | TGTACA | 1 cut(s) | 1713 |
| Bsp143I | GATC | 7 cut(s) | 27, 411, 488, 760, 823, 1052, 1553 |
| BspACI | CCGC | 5 cut(s) | 70, 209, 237, 344, 1501 |
| BspANI | GGCC | 3 cut(s) | 852, 1012, 1455 |
| BspCNI | CTCAG | 4 cut(s) | 52, 115, 155, 732 |
| BspEI | TCCGGA | 1 cut(s) | 673 |
| BspFNI | CGCG | 1 cut(s) | 209 |
| BspHI | TCATGA | 1 cut(s) | 790 |
| BspLI | GGNNCC | 5 cut(s) | 20, 490, 690, 825, 1611 |
| BspMAI | CTGCAG | 1 cut(s) | 591 |
| BspMI | ACCTGC | 1 cut(s) | 388 |
| BspPI | GGATC | 6 cut(s) | 483, 496, 755, 818, 831, 1561 |
| BspT107I | GGYRCC | 1 cut(s) | 688 |
| BsrGI | TGTACA | 1 cut(s) | 1713 |
| BsrI | ACTGG | 3 cut(s) | 653, 1214, 1788 |
| BssECI | CCNNGG | 3 cut(s) | 1185, 1382, 1605 |
| BssMI | GATC | 7 cut(s) | 27, 411, 488, 760, 823, 1052, 1553 |
| BssNI | GRCGYC | 1 cut(s) | 1592 |
| BssT1I | CCWWGG | 2 cut(s) | 1382, 1605 |
| Bst2UI | CCWGG | 2 cut(s) | 1187, 1539 |
| Bst4CI | ACNGT | 5 cut(s) | 328, 787, 1088, 1142, 1451 |
| Bst6I | CTCTTC | 1 cut(s) | 1749 |
| BstACI | GRCGYC | 1 cut(s) | 1592 |
| BstAUI | TGTACA | 1 cut(s) | 1713 |
| BstC8I | GCNNGC | 5 cut(s) | 1418, 1678, 1682, 1686, 1769 |
| BstDEI | CTNAG | 8 cut(s) | 9, 60, 123, 142, 719, 804, 901, 917 |
| BstF5I | GGATG | 3 cut(s) | 1264, 1274, 1392 |
| BstFNI | CGCG | 1 cut(s) | 209 |
| BstHHI | GCGC | 1 cut(s) | 1201 |
| BstKTI | GATC | 7 cut(s) | 30, 414, 491, 763, 826, 1055, 1556 |
| BstMAI | GTCTC | 2 cut(s) | 1599, 1751 |
| BstMBI | GATC | 7 cut(s) | 27, 411, 488, 760, 823, 1052, 1553 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 76, 379, 779, 1196, 1261 |
| BstNI | CCWGG | 2 cut(s) | 1187, 1539 |
| BstNSI | RCATGY | 2 cut(s) | 1105, 1771 |
| BstSCI | CCNGG | 3 cut(s) | 937, 1185, 1537 |
| BstSFI | CTRYAG | 6 cut(s) | 225, 587, 607, 783, 984, 1671 |
| BstSLI | GKGCMC | 2 cut(s) | 304, 1337 |
| BstUI | CGCG | 1 cut(s) | 209 |
| BstV1I | GCAGC | 4 cut(s) | 353, 1213, 1276, 1783 |
| BstV2I | GAAGAC | 1 cut(s) | 121 |
| BstX2I | RGATCY | 5 cut(s) | 27, 488, 760, 823, 1052 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1574 |
| BstYI | RGATCY | 5 cut(s) | 27, 488, 760, 823, 1052 |
| Bsu36I | CCTNAGG | 1 cut(s) | 901 |
| BsuRI | GGCC | 3 cut(s) | 852, 1012, 1455 |
| BtgZI | GCGATG | 1 cut(s) | 1442 |
| BtrI | CACGTC | 1 cut(s) | 1351 |
| BtsCI | GGATG | 3 cut(s) | 1264, 1274, 1392 |
| BtsIMutI | CAGTG | 5 cut(s) | 333, 727, 1147, 1456, 1542 |
| BveI | ACCTGC | 1 cut(s) | 388 |
| Cac8I | GCNNGC | 5 cut(s) | 1418, 1678, 1682, 1686, 1769 |
| CciI | TCATGA | 1 cut(s) | 790 |
| CfoI | GCGC | 1 cut(s) | 1201 |
| Cfr13I | GGNCC | 6 cut(s) | 18, 572, 583, 650, 850, 1564 |
| CseI | GACGC | 2 cut(s) | 1367, 1581 |
| Csp6I | GTAC | 2 cut(s) | 378, 1714 |
| CviAII | CATG | 7 cut(s) | 557, 791, 949, 1102, 1176, 1697, 1768 |
| CviQI | GTAC | 2 cut(s) | 378, 1714 |
| DdeI | CTNAG | 8 cut(s) | 9, 60, 123, 142, 719, 804, 901, 917 |
| DpnI | GATC | 7 cut(s) | 29, 413, 490, 762, 825, 1054, 1555 |
| DpnII | GATC | 7 cut(s) | 27, 411, 488, 760, 823, 1052, 1553 |
| DraI | TTTAAA | 2 cut(s) | 280, 433 |
| DraIII | CACNNNGTG | 1 cut(s) | 569 |
| EaeI | YGGCCR | 1 cut(s) | 1453 |
| Eam1104I | CTCTTC | 1 cut(s) | 1749 |
| EarI | CTCTTC | 1 cut(s) | 1749 |
| EciI | GGCGGA | 1 cut(s) | 85 |
| Ecl136II | GAGCTC | 1 cut(s) | 908 |
| Eco130I | CCWWGG | 2 cut(s) | 1382, 1605 |
| Eco24I | GRGCYC | 2 cut(s) | 375, 910 |
| Eco47I | GGWCC | 5 cut(s) | 18, 572, 583, 650, 1564 |
| Eco53kI | GAGCTC | 1 cut(s) | 908 |
| Eco57I | CTGAAG | 2 cut(s) | 1077, 1539 |
| Eco81I | CCTNAGG | 1 cut(s) | 901 |
| EcoICRI | GAGCTC | 1 cut(s) | 908 |
| EcoO109I | RGGNCCY | 2 cut(s) | 18, 583 |
| EcoRI | GAATTC | 2 cut(s) | 794, 1523 |
| EcoRII | CCWGG | 2 cut(s) | 1185, 1537 |
| EcoT14I | CCWWGG | 2 cut(s) | 1382, 1605 |
| EcoT22I | ATGCAT | 1 cut(s) | 562 |
| EcoT38I | GRGCYC | 2 cut(s) | 375, 910 |
| ErhI | CCWWGG | 2 cut(s) | 1382, 1605 |
| Esp3I | CGTCTC | 2 cut(s) | 1599, 1751 |
| FaeI | CATG | 7 cut(s) | 560, 794, 952, 1105, 1179, 1700, 1771 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 251, 283, 411, 443 |
| FaqI | GGGAC | 3 cut(s) | 131, 638, 1410 |
| FatI | CATG | 7 cut(s) | 556, 790, 948, 1101, 1175, 1696, 1767 |
| FauNDI | CATATG | 1 cut(s) | 514 |
| Fnu4HI | GCNGC | 5 cut(s) | 342, 1202, 1290, 1501, 1772 |
| FokI | GGATG | 3 cut(s) | 1251, 1261, 1399 |
| FriOI | GRGCYC | 2 cut(s) | 375, 910 |
| Fsp4HI | GCNGC | 5 cut(s) | 342, 1202, 1290, 1501, 1772 |
| FspBI | CTAG | 4 cut(s) | 521, 744, 1269, 1413 |
| GlaI | GCGC | 1 cut(s) | 1200 |
| GluI | GCNGC | 5 cut(s) | 342, 1202, 1290, 1501, 1772 |
| GsaI | CCCAGC | 1 cut(s) | 372 |
| GsuI | CTGGAG | 3 cut(s) | 413, 1176, 1584 |
| HaeIII | GGCC | 3 cut(s) | 852, 1012, 1455 |
| HapII | CCGG | 4 cut(s) | 478, 674, 938, 1261 |
| HgaI | GACGC | 2 cut(s) | 1367, 1581 |
| HhaI | GCGC | 1 cut(s) | 1201 |
| Hin1I | GRCGYC | 1 cut(s) | 1592 |
| Hin1II | CATG | 7 cut(s) | 560, 794, 952, 1105, 1179, 1700, 1771 |
| Hin6I | GCGC | 1 cut(s) | 1199 |
| HinP1I | GCGC | 1 cut(s) | 1199 |
| HincII | GTYRAC | 2 cut(s) | 254, 403 |
| HindII | GTYRAC | 2 cut(s) | 254, 403 |
| HindIII | AAGCTT | 1 cut(s) | 456 |
| HinfI | GANTC | 8 cut(s) | 263, 481, 1061, 1158, 1402, 1409, 1762, 1813 |
| HpaII | CCGG | 4 cut(s) | 478, 674, 938, 1261 |
| HphI | GGTGA | 6 cut(s) | 953, 1431, 1506, 1548, 1635, 1659 |
| Hpy166II | GTNNAC | 3 cut(s) | 254, 324, 403 |
| Hpy188I | TCNGA | 7 cut(s) | 61, 96, 416, 760, 1057, 1066, 1744 |
| Hpy8I | GTNNAC | 3 cut(s) | 254, 324, 403 |
| HpyAV | CCTTC | 5 cut(s) | 253, 364, 680, 1161, 1674 |
| HpyCH4III | ACNGT | 5 cut(s) | 328, 787, 1088, 1142, 1451 |
| HpyCH4IV | ACGT | 2 cut(s) | 527, 1350 |
| HpyCH4V | TGCA | 8 cut(s) | 518, 560, 589, 956, 1037, 1247, 1274, 1771 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 76, 379, 779, 1196, 1261 |
| HpyF3I | CTNAG | 8 cut(s) | 9, 60, 123, 142, 719, 804, 901, 917 |
| HpySE526I | ACGT | 2 cut(s) | 527, 1350 |
| Hsp92I | GRCGYC | 1 cut(s) | 1592 |
| Hsp92II | CATG | 7 cut(s) | 560, 794, 952, 1105, 1179, 1700, 1771 |
| HspAI | GCGC | 1 cut(s) | 1199 |
| Kpn2I | TCCGGA | 1 cut(s) | 673 |
| Kzo9I | GATC | 7 cut(s) | 27, 411, 488, 760, 823, 1052, 1553 |
| LmnI | GCTCC | 4 cut(s) | 394, 905, 1030, 1150 |
| Lsp1109I | GCAGC | 4 cut(s) | 353, 1213, 1276, 1783 |
| LweI | GCATC | 4 cut(s) | 569, 1273, 1283, 1414 |
| MaeI | CTAG | 4 cut(s) | 521, 744, 1269, 1413 |
| MaeII | ACGT | 2 cut(s) | 527, 1350 |
| MaeIII | GTNAC | 2 cut(s) | 976, 1351 |
| MalI | GATC | 7 cut(s) | 29, 413, 490, 762, 825, 1054, 1555 |
| MboI | GATC | 7 cut(s) | 27, 411, 488, 760, 823, 1052, 1553 |
| MboII | GAAGA | 9 cut(s) | 121, 155, 964, 1062, 1070, 1526, 1532, 1735, 1766 |
| MflI | RGATCY | 5 cut(s) | 27, 488, 760, 823, 1052 |
| MhlI | GDGCHC | 5 cut(s) | 304, 375, 910, 1147, 1337 |
| MlsI | TGGCCA | 1 cut(s) | 1455 |
| MluNI | TGGCCA | 1 cut(s) | 1455 |
| MlyI | GAGTC | 3 cut(s) | 257, 1167, 1418 |
| Mox20I | TGGCCA | 1 cut(s) | 1455 |
| Mph1103I | ATGCAT | 1 cut(s) | 562 |
| MroI | TCCGGA | 1 cut(s) | 673 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1663 |
| MscI | TGGCCA | 1 cut(s) | 1455 |
| MseI | TTAA | 5 cut(s) | 279, 309, 432, 449, 929 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1140, 1269, 1485 |
| Msp20I | TGGCCA | 1 cut(s) | 1455 |
| MspA1I | CMGCKG | 1 cut(s) | 344 |
| MspI | CCGG | 4 cut(s) | 478, 674, 938, 1261 |
| MspR9I | CCNGG | 3 cut(s) | 939, 1187, 1539 |
| Mva1269I | GAATGC | 4 cut(s) | 1027, 1186, 1639, 1665 |
| MvaI | CCWGG | 2 cut(s) | 1187, 1539 |
| MvnI | CGCG | 1 cut(s) | 209 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 76, 379, 779, 1196, 1261 |
| NciI | CCSGG | 1 cut(s) | 939 |
| NdeI | CATATG | 1 cut(s) | 514 |
| NdeII | GATC | 7 cut(s) | 27, 411, 488, 760, 823, 1052, 1553 |
| NlaIII | CATG | 7 cut(s) | 560, 794, 952, 1105, 1179, 1700, 1771 |
| NlaIV | GGNNCC | 5 cut(s) | 20, 490, 690, 825, 1611 |
| NmuCI | GTSAC | 2 cut(s) | 976, 1351 |
| NsiI | ATGCAT | 1 cut(s) | 562 |
| NspI | RCATGY | 2 cut(s) | 1105, 1771 |
| OliI | CACNNNNGTG | 2 cut(s) | 1140, 1485 |
| PaeI | GCATGC | 1 cut(s) | 1771 |
| PagI | TCATGA | 1 cut(s) | 790 |
| PctI | GAATGC | 4 cut(s) | 1027, 1186, 1639, 1665 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1663 |
| PfeI | GAWTC | 5 cut(s) | 481, 1061, 1402, 1762, 1813 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1154 |
| PkrI | GCNGC | 5 cut(s) | 343, 1203, 1291, 1502, 1773 |
| PleI | GAGTC | 3 cut(s) | 257, 1166, 1417 |
| PpsI | GAGTC | 3 cut(s) | 257, 1166, 1417 |
| PpuMI | RGGWCCY | 2 cut(s) | 18, 583 |
| Psp124BI | GAGCTC | 1 cut(s) | 910 |
| Psp1406I | AACGTT | 1 cut(s) | 527 |
| Psp5II | RGGWCCY | 2 cut(s) | 18, 583 |
| Psp6I | CCWGG | 2 cut(s) | 1185, 1537 |
| PspFI | CCCAGC | 1 cut(s) | 368 |
| PspGI | CCWGG | 2 cut(s) | 1185, 1537 |
| PspN4I | GGNNCC | 5 cut(s) | 20, 490, 690, 825, 1611 |
| PspPI | GGNCC | 6 cut(s) | 18, 572, 583, 650, 850, 1564 |
| PspPPI | RGGWCCY | 2 cut(s) | 18, 583 |
| PstI | CTGCAG | 1 cut(s) | 591 |
| PsuI | RGATCY | 5 cut(s) | 27, 488, 760, 823, 1052 |
| RsaI | GTAC | 2 cut(s) | 379, 1715 |
| RsaNI | GTAC | 2 cut(s) | 378, 1714 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1140, 1269, 1485 |
| SacI | GAGCTC | 1 cut(s) | 910 |
| SaqAI | TTAA | 5 cut(s) | 279, 309, 432, 449, 929 |
| SatI | GCNGC | 5 cut(s) | 342, 1202, 1290, 1501, 1772 |
| Sau3AI | GATC | 7 cut(s) | 27, 411, 488, 760, 823, 1052, 1553 |
| Sau96I | GGNCC | 6 cut(s) | 18, 572, 583, 650, 850, 1564 |
| SchI | GAGTC | 3 cut(s) | 257, 1167, 1418 |
| ScrFI | CCNGG | 3 cut(s) | 939, 1187, 1539 |
| SduI | GDGCHC | 5 cut(s) | 304, 375, 910, 1147, 1337 |
| SfaNI | GCATC | 4 cut(s) | 569, 1273, 1283, 1414 |
| SfcI | CTRYAG | 6 cut(s) | 225, 587, 607, 783, 984, 1671 |
| SinI | GGWCC | 5 cut(s) | 18, 572, 583, 650, 1564 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1140, 1269, 1485 |
| SphI | GCATGC | 1 cut(s) | 1771 |
| SsiI | CCGC | 5 cut(s) | 70, 209, 237, 344, 1501 |
| SspMI | CTAG | 4 cut(s) | 521, 744, 1269, 1413 |
| SstI | GAGCTC | 1 cut(s) | 910 |
| StyD4I | CCNGG | 3 cut(s) | 937, 1185, 1537 |
| StyI | CCWWGG | 2 cut(s) | 1382, 1605 |
| TaaI | ACNGT | 5 cut(s) | 328, 787, 1088, 1142, 1451 |
| TaiI | ACGT | 2 cut(s) | 530, 1353 |
| TaqI | TCGA | 2 cut(s) | 1405, 1749 |
| TatI | WGTACW | 1 cut(s) | 1713 |
| TauI | GCSGC | 1 cut(s) | 1503 |
| TfiI | GAWTC | 5 cut(s) | 481, 1061, 1402, 1762, 1813 |
| Tru1I | TTAA | 5 cut(s) | 279, 309, 432, 449, 929 |
| Tru9I | TTAA | 5 cut(s) | 279, 309, 432, 449, 929 |
| TscAI | CASTG | 5 cut(s) | 333, 727, 1147, 1456, 1549 |
| TseFI | GTSAC | 2 cut(s) | 976, 1351 |
| TseI | GCWGC | 4 cut(s) | 341, 1201, 1289, 1771 |
| Tsp45I | GTSAC | 2 cut(s) | 976, 1351 |
| TspDTI | ATGAA | 9 cut(s) | 545, 779, 807, 1112, 1230, 1448, 1692, 1736, 1767 |
| TspGWI | ACGGA | 2 cut(s) | 278, 1414 |
| TspRI | CASTG | 5 cut(s) | 333, 727, 1147, 1456, 1549 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1154 |
| VpaK11BI | GGWCC | 5 cut(s) | 18, 572, 583, 650, 1564 |
| XapI | RAATTY | 4 cut(s) | 794, 968, 1217, 1523 |
| XbaI | TCTAGA | 1 cut(s) | 743 |
| XceI | RCATGY | 2 cut(s) | 1105, 1771 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1663 |
| XspI | CTAG | 4 cut(s) | 521, 744, 1269, 1413 |
| Zsp2I | ATGCAT | 1 cut(s) | 562 |