Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001135

Physical Location & Seq

Genomic Coordinates Forward (+)

48333122 .. 48334518

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0368200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTGGAGAAGGATGCTGCATTTGCGAGAAGGGCGTCATCTCCCTGACAAGGCAATTGATCTGTTAGATGAGGCTTGTGCAAATGTGAGAGTCCTACTTGATAGTCAGCCTGAAGAAATCGACGACCTTGAAAGAAAGATAATGCAGCTGAAAGTTGAGGTTCATGCACTTGAGAAAGAAAAGGATATAACTAGCATAGTTCATCATGTTGAAGTGCGAAAAGAACTTGATGACTTGGGAGACAAATTGCAGCCCTTGAGGATAAAATATGGAATTGAGAAGCAAAGGATTGATGTAAGTCAACGGTTTAAACAGAAGCGTGAAAAGCTGTTAATTTCTTTAGCAGAGGCTGAAAGAAGATGTGATTGTGCCAAGGTTGATGACTTGCGTTATGGAGCTATTCAAGAGTTGGAATCTGCCATTGCACAGCTTGATGGGAGCAGCAATGACAACTTGATGTTGACAGAGATTGTTGTACCAGAACACATTGCAGAGGTTGTAAGCCGTTCTACTGGCATACCCGTGACAAGGCTTGACCAGAATGGAATAGAGAGGTTAATTGGACTTTCTGAGAGCTTGCATAAAAGAGTAGTTGGCCAAGAACAGGCAGTTGATGCTGTTGCAGAGGCCGTGCTGAGGTCCAGAGCTGGTCTTGGCAGGCCAGAACAGCCAACTGGTTCCTTCTTATTTTTGGGTCCAACTGGTGTCGGAAAAACTGAGCTCGCAAAGCCTCTTGTTGAGCAACTGTTTGATGATGAAAATATAATCTTTACATTATATAACTTAACTGTTTACAGGTATGTTGGTTATGAGGATGGTGGGCAACTGACTGAAGCTGTAAGACGGAGACCTTATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

286

Amino Acids

32.47

Weight (kDa)

5.43

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_9	PF17871	11 - 64	7.2e-14	AAA lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320
fragaria_vesca	FvH4_3g40330 FvH4_3g40330 FvH4_3g40330 FvH4_7g25750 FvH4_7g25750 FvH4_7g25750 FvH4_7g25750
malus_domestica	MD01G1165200.v1.1 MD03G1053200.v1.1 MD07G1232500.v1.1 MD11G1054900.v1.1
prunus_persica	Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.6G042500_v2.0.a1 Prupe.6G042500_v2.0.a1
pyrus_communis	pycom01g17910 pycom03g04230 pycom11g04480
rosa_chinensis	RchiOBHm_Chr1g0372011 RchiOBHm_Chr5g0072681
rosa_laevigata	RLG00000026928 RLG00000036325
rosa_multiflora	Rmu_sc0001755.1_g000036 Rmu_sc0003160.1_g000034
rosa_roxburghii	Rroxscaffold_1G00008460
rosa_rugosa	Rorug01G0367900 Rorug01G0368000 Rorug01G0368100 Rorug01G0368200 Rorug01G0368300 Rorug05G0419200 Rorug05G0419300
rosa_samantha	Rh1AG377600 Rh1BG341000 Rh1CG354200 Rh1DG372000 Rh5AG476200 Rh5BG496400 Rh5CG520200 Rh5DG508800
rosa_wichuraiana	Rw1G033220 Rw5G044220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	595
AcuI	CTGAAG	2 cut(s)	132, 852
AcyI	GRCGYC	1 cut(s)	34
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	4 cut(s)	49, 528, 604, 636
AgsI	TTSAA	3 cut(s)	131, 212, 404
AluBI	AGCT	8 cut(s)	148, 328, 398, 430, 576, 647, 721, 836
AluI	AGCT	8 cut(s)	148, 328, 398, 430, 576, 647, 721, 836
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	2 cut(s)	234, 841
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	3 cut(s)	595, 627, 659
ApeKI	GCWGC	4 cut(s)	16, 145, 250, 441
AspS9I	GGNCC	2 cut(s)	639, 695
AvaII	GGWCC	2 cut(s)	639, 695
BalI	TGGCCA	1 cut(s)	597
BanII	GRGCYC	1 cut(s)	723
Bbv12I	GWGCWC	1 cut(s)	723
BbvCI	CCTCAGC	1 cut(s)	635
BbvI	GCAGC	4 cut(s)	3, 157, 262, 453
BccI	CCATC	2 cut(s)	428, 809
BceAI	ACGGC	2 cut(s)	489, 614
BcoDI	GTCTC	2 cut(s)	234, 841
BfaI	CTAG	1 cut(s)	192
BisI	GCNGC	4 cut(s)	17, 146, 251, 442
BlsI	GCNGC	4 cut(s)	18, 147, 252, 443
Bme18I	GGWCC	2 cut(s)	639, 695
BmgT120I	GGNCC	2 cut(s)	639, 695
BmiI	GGNNCC	2 cut(s)	679, 696
BmsI	GCATC	2 cut(s)	3, 604
Bpu10I	CCTNAGC	1 cut(s)	635
BpuEI	CTTGAG	2 cut(s)	191, 277
BsaHI	GRCGYC	1 cut(s)	34
BsaI	GGTCTC	1 cut(s)	841
BsaJI	CCNNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 528, 604, 636
Bse1I	ACTGG	3 cut(s)	517, 679, 706
Bse3DI	GCAATG	3 cut(s)	420, 451, 486
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	18, 820
BseLI	CCNNNNNNNGG	4 cut(s)	49, 528, 604, 636
BseMI	GCAATG	3 cut(s)	420, 451, 486
BseMII	CTCAG	3 cut(s)	561, 626, 708
BseNI	ACTGG	3 cut(s)	517, 679, 706
BseXI	GCAGC	4 cut(s)	3, 157, 262, 453
BshFI	GGCC	3 cut(s)	597, 629, 661
BsiHKAI	GWGCWC	1 cut(s)	723
BslI	CCNNNNNNNGG	4 cut(s)	49, 528, 604, 636
BsmAI	GTCTC	2 cut(s)	234, 841
BsnI	GGCC	3 cut(s)	597, 629, 661
Bso31I	GGTCTC	1 cut(s)	841
Bsp1286I	GDGCHC	1 cut(s)	723
Bsp143I	GATC	1 cut(s)	58
BspANI	GGCC	3 cut(s)	597, 629, 661
BspCNI	CTCAG	3 cut(s)	562, 627, 709
BspLI	GGNNCC	2 cut(s)	679, 696
BspTNI	GGTCTC	1 cut(s)	841
BsrDI	GCAATG	3 cut(s)	420, 451, 486
BsrI	ACTGG	3 cut(s)	517, 679, 706
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	1 cut(s)	58
BssNI	GRCGYC	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	372
Bst4CI	ACNGT	3 cut(s)	306, 747, 790
BstACI	GRCGYC	1 cut(s)	34
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstC8I	GCNNGC	3 cut(s)	578, 659, 723
BstDEI	CTNAG	3 cut(s)	570, 635, 717
BstF5I	GGATG	2 cut(s)	18, 820
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	2 cut(s)	234, 841
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 31, 325, 614, 667, 727
BstV1I	GCAGC	4 cut(s)	3, 157, 262, 453
BsuRI	GGCC	3 cut(s)	597, 629, 661
BtsCI	GGATG	2 cut(s)	18, 820
Cac8I	GCNNGC	3 cut(s)	578, 659, 723
CaiI	CAGNNNCTG	1 cut(s)	350
Cfr13I	GGNCC	2 cut(s)	639, 695
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	476
CviAII	CATG	2 cut(s)	164, 206
CviQI	GTAC	1 cut(s)	476
DdeI	CTNAG	3 cut(s)	570, 635, 717
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
DraI	TTTAAA	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	595
Ecl136II	GAGCTC	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	723
Eco31I	GGTCTC	1 cut(s)	841
Eco47I	GGWCC	2 cut(s)	639, 695
Eco53kI	GAGCTC	1 cut(s)	721
Eco57I	CTGAAG	2 cut(s)	132, 852
EcoICRI	GAGCTC	1 cut(s)	721
EcoT14I	CCWWGG	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	2 cut(s)	167, 209
FatI	CATG	2 cut(s)	163, 205
Fnu4HI	GCNGC	4 cut(s)	17, 146, 251, 442
FokI	GGATG	2 cut(s)	25, 827
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	4 cut(s)	17, 146, 251, 442
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	4 cut(s)	17, 146, 251, 442
HaeIII	GGCC	3 cut(s)	597, 629, 661
HgaI	GACGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	34
Hin1II	CATG	2 cut(s)	167, 209
HincII	GTYRAC	2 cut(s)	302, 462
HindII	GTYRAC	2 cut(s)	302, 462
HinfI	GANTC	2 cut(s)	90, 413
Hpy166II	GTNNAC	3 cut(s)	302, 462, 793
Hpy188I	TCNGA	2 cut(s)	571, 710
Hpy188III	TCNNGA	2 cut(s)	404, 642
Hpy8I	GTNNAC	3 cut(s)	302, 462, 793
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	3, 23, 691
HpyCH4III	ACNGT	3 cut(s)	306, 747, 790
HpyCH4V	TGCA	9 cut(s)	19, 80, 145, 167, 250, 425, 491, 580, 623
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 31, 325, 614, 667, 727
HpyF3I	CTNAG	3 cut(s)	570, 635, 717
Hsp92I	GRCGYC	1 cut(s)	34
Hsp92II	CATG	2 cut(s)	167, 209
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	2 cut(s)	395, 438
Lsp1109I	GCAGC	4 cut(s)	3, 157, 262, 453
LweI	GCATC	2 cut(s)	3, 604
MaeI	CTAG	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	2 cut(s)	125, 369
MfeI	CAATTG	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	723
MlsI	TGGCCA	1 cut(s)	597
MluCI	AATT	5 cut(s)	54, 245, 273, 333, 558
MluNI	TGGCCA	1 cut(s)	597
MlyI	GAGTC	1 cut(s)	99
MmeI	TCCRAC	3 cut(s)	390, 688, 722
Mox20I	TGGCCA	1 cut(s)	597
MscI	TGGCCA	1 cut(s)	597
MseI	TTAA	5 cut(s)	309, 332, 557, 785, 859
MslI	CAYNNNNRTG	1 cut(s)	521
Msp20I	TGGCCA	1 cut(s)	597
MspA1I	CMGCKG	1 cut(s)	148
MssI	GTTTAAAC	1 cut(s)	310
MunI	CAATTG	1 cut(s)	54
MwoI	GCNNNNNNNGC	6 cut(s)	22, 31, 325, 614, 667, 727
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	2 cut(s)	167, 209
NlaIV	GGNNCC	2 cut(s)	679, 696
NmuCI	GTSAC	1 cut(s)	523
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	4 cut(s)	18, 147, 252, 443
PleI	GAGTC	1 cut(s)	98
PmeI	GTTTAAAC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	723
PspN4I	GGNNCC	2 cut(s)	679, 696
PspPI	GGNCC	2 cut(s)	639, 695
PstNI	CAGNNNCTG	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
RseI	CAYNNNNRTG	1 cut(s)	521
SacI	GAGCTC	1 cut(s)	723
SaqAI	TTAA	5 cut(s)	309, 332, 557, 785, 859
SatI	GCNGC	4 cut(s)	17, 146, 251, 442
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	2 cut(s)	639, 695
SchI	GAGTC	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	723
SfaNI	GCATC	2 cut(s)	3, 604
SinI	GGWCC	2 cut(s)	639, 695
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	2 cut(s)	170, 256
SmoI	CTYRAG	2 cut(s)	170, 256
Sse9I	AATT	5 cut(s)	54, 245, 273, 333, 558
SspMI	CTAG	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	723
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	3 cut(s)	306, 747, 790
TaqI	TCGA	1 cut(s)	120
TasI	AATT	5 cut(s)	54, 245, 273, 333, 558
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	5 cut(s)	309, 332, 557, 785, 859
Tru9I	TTAA	5 cut(s)	309, 332, 557, 785, 859
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	4 cut(s)	16, 145, 250, 441
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	3 cut(s)	152, 191, 771
TspGWI	ACGGA	1 cut(s)	859
VpaK11BI	GGWCC	2 cut(s)	639, 695
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.