Rh5DG508800

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001135
Physical Location & Seq
Reverse (-)
79447017 .. 79451226
4210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG508800.1

Sequence Viewer

Length: 1389 bp
ATGATTGTAGATATATCCTTCAATCAGTTAGGAGGACTTTCTACACTACGCTTTCTTGAACAGGTTGATCACTATATTGGCAAGGATCATATTTTCAAACGCAGCATAATTCTGATAAAAGCCTGGTGCTACTATGAGAGTCGTATTCTTGGTGCTCATCATGGTTTAATTTCAACATATGCTTTGGAAACATTAGTCCTATATATATTCCATCTTTTTCATTCTTCTCTAGATGGCCCTTTAACGGTCCTCTACAGATTTTTGGATTACTTCAGCAAATTTGATTGGGAGAAATATTGTGTAAGTTTAAATGGACCAGTTAGCAAATCCTCCCTACCTGATATTGTGGCTGAAGTACCAGATAATGGAGGGGATGATGTACTGCTAAGTGAAGAGTTTATTAGAAACTGTGTAGACATGTTCTCTGTTCCATCAAAGGGGTGTGAGACAAACTTAAGAGTGTTTTCCTTGAAGCATCTTAATATAATCGATCCACTAAATGAGAACAACAACCTTGGCCGTAGTGTCAATAGAGGTAGCTTCTATCGAATATGTAGTGCTTTTAAATATGGAGCTCGCAAGCTAGGCTGGATTCTCTTGTTACCAGCAGAGAGAATATCTGATGAACTTAACAAGTTTTTCGCTAACACTTTGGATAGGCATGAAAGTAAATGCCAGACTACTGTGCAAAATAATGCCTTGTTGGAGCTTGGTGAAGATTTGGACAGTCATTGTTTGAACCTGCAATATAGTCTGATTGGCCAGAGGTGTGCTACATCACCTCCTTTATTGCCCAGTCCTCCCTTGTCACCTCAACCATGGAAAGAGAATCCATGGGATGCTACCTGCGAAGCCCTACAGTCCCAGCACAATATTAATTCTCAAGCTAATGCAAATGGTATTCCTTGGGGAACACATGCGTATCACACAAATGGTGCCAGTTTTTTTGTTCCTCCATTCAGAGAAGAGAAGAACAAACCACGAGGAACAGGGACGTACATCCCCAATGCGTCTTTTCAGAATTATCGTCCCTACAAGGATAGACACTTGCCTGGAAGGGGAAGGAAAGAGGCAGCTGGAACTTATGCTCCATTTCAGAGACACACTTTCAATTATGGCTTTCCTGCAGCCTCTCAAGAGTCAATTGCACCTGGAGAATGCAACCATGAGCTCTCAGAAGCTGAGTACCCAGTTTTAAGTAATGCAAACTCTGCAACATCAGATTACCATCAACCTCAGCTTTCAATTTGGGAGCCTTTCCATGAAAATGGTTTCTCCAAATCCCCCGACAAACCTGAGTCTAGATCCTCCTCCCCTCAATCATGGGAAGAAGTACCCATGCCACAACTGGACAGTTTACGGTTATCAGGAGTCGATGAAGAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_assoc

Protein Analysis

462

Amino Acids

52.25

Weight (kDa)

5.87

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP-OAS1 PF26180 26 - 218 8e-100 PAP/OAS1 substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 750, 854
AccB1I GGYRCC 1 cut(s) 935
AccB7I CCANNNNNTGG 1 cut(s) 365
AccI GTMKAC 1 cut(s) 414
AclWI GGATC 3 cut(s) 93, 485, 1299
AcoI YGGCCR 2 cut(s) 517, 760
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 2 cut(s) 256, 372
AfaI GTAC 5 cut(s) 357, 381, 998, 1187, 1335
AfiI CCNNNNNNNGG 4 cut(s) 244, 365, 437, 1058
AflII CTTAAG 1 cut(s) 454
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 8 cut(s) 22, 59, 97, 174, 472, 739, 1111, 1245
AjnI CCWGG 3 cut(s) 122, 1051, 1150
AloI GAACNNNNNNTCC 2 cut(s) 1072, 1104
AluBI AGCT 9 cut(s) 540, 575, 583, 709, 887, 1076, 1171, 1181, 1240
AluI AGCT 9 cut(s) 540, 575, 583, 709, 887, 1076, 1171, 1181, 1240
Alw21I GWGCWC 3 cut(s) 157, 577, 1173
Alw26I GTCTC 2 cut(s) 440, 1093
AlwI GGATC 3 cut(s) 93, 485, 1299
AlwNI CAGNNNCTG 1 cut(s) 1181
AoxI GGCC 3 cut(s) 235, 517, 760
ApeKI GCWGC 3 cut(s) 102, 1073, 1127
ApoI RAATTY 1 cut(s) 278
AseI ATTAAT 1 cut(s) 876
AspS9I GGNCC 3 cut(s) 236, 247, 314
AsuHPI GGTGA 3 cut(s) 725, 771, 801
AvaII GGWCC 2 cut(s) 247, 314
BaeI ACNNNNGTAYC 2 cut(s) 905, 938
BalI TGGCCA 1 cut(s) 762
BanI GGYRCC 1 cut(s) 935
BanII GRGCYC 2 cut(s) 577, 1173
BauI CACGAG 1 cut(s) 981
Bbv12I GWGCWC 3 cut(s) 157, 577, 1173
BbvCI CCTCAGC 1 cut(s) 1236
BbvI GCAGC 3 cut(s) 114, 1085, 1139
BccI CCATC 4 cut(s) 219, 227, 439, 1236
BceAI ACGGC 1 cut(s) 504
BciT130I CCWGG 3 cut(s) 124, 1053, 1152
BclI TGATCA 1 cut(s) 67
BcoDI GTCTC 2 cut(s) 440, 1093
BfaI CTAG 3 cut(s) 230, 584, 1302
BfmI CTRYAG 3 cut(s) 253, 857, 1125
BfrI CTTAAG 1 cut(s) 454
BfuAI ACCTGC 2 cut(s) 750, 854
BisI GCNGC 3 cut(s) 103, 1074, 1128
BlsI GCNGC 3 cut(s) 104, 1075, 1129
Bme1390I CCNGG 3 cut(s) 124, 1053, 1152
Bme18I GGWCC 2 cut(s) 247, 314
BmgT120I GGNCC 3 cut(s) 236, 247, 314
BmiI GGNNCC 2 cut(s) 937, 1254
BmrFI CCNGG 3 cut(s) 124, 1053, 1152
BmrI ACTGGG 2 cut(s) 789, 1184
BmsI GCATC 2 cut(s) 484, 829
BmuI ACTGGG 2 cut(s) 789, 1184
BpmI CTGGAG 1 cut(s) 1173
Bpu10I CCTNAGC 1 cut(s) 1236
BpuEI CTTGAG 2 cut(s) 867, 1119
Bsa29I ATCGAT 1 cut(s) 489
BsaBI GATNNNNATC 1 cut(s) 1227
BsaJI CCNNGG 4 cut(s) 514, 818, 833, 905
BsaXI ACNNNNNCTCC 4 cut(s) 766, 796, 1072, 1102
Bsc4I CCNNNNNNNGG 4 cut(s) 244, 365, 437, 1058
Bse1I ACTGG 5 cut(s) 317, 795, 939, 1190, 1353
Bse8I GATNNNNATC 1 cut(s) 1227
BseBI CCWGG 3 cut(s) 124, 1053, 1152
BseCI ATCGAT 1 cut(s) 489
BseDI CCNNGG 4 cut(s) 514, 818, 833, 905
BseGI GGATG 3 cut(s) 379, 844, 999
BseJI GATNNNNATC 1 cut(s) 1227
BseLI CCNNNNNNNGG 4 cut(s) 244, 365, 437, 1058
BseMII CTCAG 4 cut(s) 1173, 1188, 1250, 1287
BseNI ACTGG 5 cut(s) 317, 795, 939, 1190, 1353
BseRI GAGGAG 1 cut(s) 1300
BseXI GCAGC 3 cut(s) 114, 1085, 1139
BseYI CCCAGC 1 cut(s) 864
BshFI GGCC 3 cut(s) 237, 519, 762
BshNI GGYRCC 1 cut(s) 935
BshVI ATCGAT 1 cut(s) 489
BsiHKAI GWGCWC 3 cut(s) 157, 577, 1173
BslFI GGGAC 3 cut(s) 847, 1006, 1014
BslI CCNNNNNNNGG 4 cut(s) 244, 365, 437, 1058
BsmAI GTCTC 2 cut(s) 440, 1093
BsmFI GGGAC 3 cut(s) 847, 1006, 1014
BsmI GAATGC 1 cut(s) 1163
BsnI GGCC 3 cut(s) 237, 519, 762
Bsp1286I GDGCHC 3 cut(s) 157, 577, 1173
Bsp143I GATC 4 cut(s) 67, 85, 490, 1304
Bsp19I CCATGG 2 cut(s) 818, 833
BspANI GGCC 3 cut(s) 237, 519, 762
BspCNI CTCAG 4 cut(s) 1174, 1187, 1249, 1288
BspDI ATCGAT 1 cut(s) 489
BspLI GGNNCC 2 cut(s) 937, 1254
BspMAI CTGCAG 1 cut(s) 1129
BspMI ACCTGC 2 cut(s) 750, 854
BspPI GGATC 3 cut(s) 93, 485, 1299
BspT107I GGYRCC 1 cut(s) 935
BspTI CTTAAG 1 cut(s) 454
BsrI ACTGG 5 cut(s) 317, 795, 939, 1190, 1353
BssECI CCNNGG 4 cut(s) 514, 818, 833, 905
BssMI GATC 4 cut(s) 67, 85, 490, 1304
BssSI CACGAG 1 cut(s) 981
BssT1I CCWWGG 4 cut(s) 514, 818, 833, 905
Bst2BI CACGAG 1 cut(s) 981
Bst2UI CCWGG 3 cut(s) 124, 1053, 1152
Bst4CI ACNGT 7 cut(s) 247, 410, 685, 728, 861, 1355, 1362
Bst6I CTCTTC 3 cut(s) 387, 960, 1374
BstAFI CTTAAG 1 cut(s) 454
BstAPI GCANNNNNTGC 1 cut(s) 1211
BstC8I GCNNGC 2 cut(s) 577, 581
BstDEI CTNAG 5 cut(s) 386, 1174, 1182, 1236, 1296
BstDSI CCRYGG 2 cut(s) 818, 833
BstF5I GGATG 3 cut(s) 379, 844, 999
BstKTI GATC 4 cut(s) 70, 88, 493, 1307
BstMAI GTCTC 2 cut(s) 440, 1093
BstMBI GATC 4 cut(s) 67, 85, 490, 1304
BstMWI GCNNNNNNNGC 2 cut(s) 585, 1211
BstNI CCWGG 3 cut(s) 124, 1053, 1152
BstNSI RCATGY 2 cut(s) 421, 920
BstSCI CCNGG 3 cut(s) 122, 1051, 1150
BstSFI CTRYAG 3 cut(s) 253, 857, 1125
BstV1I GCAGC 3 cut(s) 114, 1085, 1139
BstX2I RGATCY 1 cut(s) 1304
BstXI CCANNNNNNTGG 1 cut(s) 1268
BstYI RGATCY 1 cut(s) 1304
Bsu15I ATCGAT 1 cut(s) 489
BsuRI GGCC 3 cut(s) 237, 519, 762
BsuTUI ATCGAT 1 cut(s) 489
BtgI CCRYGG 2 cut(s) 818, 833
BtsCI GGATG 3 cut(s) 379, 844, 999
BveI ACCTGC 2 cut(s) 750, 854
Cac8I GCNNGC 2 cut(s) 577, 581
CaiI CAGNNNCTG 1 cut(s) 1181
Cfr13I GGNCC 3 cut(s) 236, 247, 314
ClaI ATCGAT 1 cut(s) 489
CseI GACGC 1 cut(s) 999
Csp6I GTAC 5 cut(s) 356, 380, 997, 1186, 1334
CviQI GTAC 5 cut(s) 356, 380, 997, 1186, 1334
DdeI CTNAG 5 cut(s) 386, 1174, 1182, 1236, 1296
DpnI GATC 4 cut(s) 69, 87, 492, 1306
DpnII GATC 4 cut(s) 67, 85, 490, 1304
DraI TTTAAA 2 cut(s) 309, 565
EaeI YGGCCR 2 cut(s) 517, 760
Eam1104I CTCTTC 3 cut(s) 387, 960, 1374
EarI CTCTTC 3 cut(s) 387, 960, 1374
Ecl136II GAGCTC 2 cut(s) 575, 1171
Eco130I CCWWGG 4 cut(s) 514, 818, 833, 905
Eco24I GRGCYC 2 cut(s) 577, 1173
Eco47I GGWCC 2 cut(s) 247, 314
Eco53kI GAGCTC 2 cut(s) 575, 1171
Eco57I CTGAAG 2 cut(s) 256, 372
EcoICRI GAGCTC 2 cut(s) 575, 1171
EcoRII CCWGG 3 cut(s) 122, 1051, 1150
EcoT14I CCWWGG 4 cut(s) 514, 818, 833, 905
EcoT38I GRGCYC 2 cut(s) 577, 1173
ErhI CCWWGG 4 cut(s) 514, 818, 833, 905
FaqI GGGAC 3 cut(s) 847, 1006, 1014
FauNDI CATATG 1 cut(s) 178
FbaI TGATCA 1 cut(s) 67
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 3 cut(s) 103, 1074, 1128
FokI GGATG 3 cut(s) 386, 851, 986
FriOI GRGCYC 2 cut(s) 577, 1173
Fsp4HI GCNGC 3 cut(s) 103, 1074, 1128
FspBI CTAG 3 cut(s) 230, 584, 1302
GluI GCNGC 3 cut(s) 103, 1074, 1128
GsaI CCCAGC 1 cut(s) 868
GsuI CTGGAG 1 cut(s) 1173
HaeIII GGCC 3 cut(s) 237, 519, 762
HgaI GACGC 1 cut(s) 999
HinfI GANTC 6 cut(s) 139, 592, 829, 1139, 1298, 1371
HphI GGTGA 3 cut(s) 725, 771, 801
Hpy166II GTNNAC 2 cut(s) 415, 1358
Hpy188I TCNGA 8 cut(s) 114, 622, 756, 962, 1020, 1098, 1177, 1222
Hpy188III TCNNGA 5 cut(s) 56, 230, 1136, 1302, 1368
Hpy8I GTNNAC 2 cut(s) 415, 1358
HpyAV CCTTC 3 cut(s) 28, 1050, 1056
HpyCH4III ACNGT 7 cut(s) 247, 410, 685, 728, 861, 1355, 1362
HpyCH4IV ACGT 1 cut(s) 995
HpyCH4V TGCA 8 cut(s) 688, 745, 893, 1127, 1148, 1161, 1205, 1214
HpyF10VI GCNNNNNNNGC 2 cut(s) 585, 1211
HpyF3I CTNAG 5 cut(s) 386, 1174, 1182, 1236, 1296
HpySE526I ACGT 1 cut(s) 995
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 4 cut(s) 67, 85, 490, 1304
LmnI GCTCC 4 cut(s) 572, 706, 1093, 1252
Lsp1109I GCAGC 3 cut(s) 114, 1085, 1139
LweI GCATC 2 cut(s) 484, 829
MaeI CTAG 3 cut(s) 230, 584, 1302
MaeII ACGT 1 cut(s) 995
MaeIII GTNAC 2 cut(s) 600, 807
MalI GATC 4 cut(s) 69, 87, 492, 1306
MboI GATC 4 cut(s) 67, 85, 490, 1304
MboII GAAGA 6 cut(s) 216, 404, 728, 977, 982, 1340
MfeI CAATTG 1 cut(s) 1143
MflI RGATCY 1 cut(s) 1304
MhlI GDGCHC 3 cut(s) 157, 577, 1173
MlsI TGGCCA 1 cut(s) 762
MluCI AATT 8 cut(s) 108, 168, 278, 877, 1021, 1111, 1143, 1245
MluNI TGGCCA 1 cut(s) 762
MlyI GAGTC 4 cut(s) 148, 1148, 1307, 1380
MmeI TCCRAC 1 cut(s) 684
Mox20I TGGCCA 1 cut(s) 762
MscI TGGCCA 1 cut(s) 762
MseI TTAA 9 cut(s) 167, 242, 308, 455, 480, 564, 630, 876, 1196
MslI CAYNNNNRTG 2 cut(s) 930, 1266
Msp20I TGGCCA 1 cut(s) 762
MspA1I CMGCKG 1 cut(s) 1076
MspCI CTTAAG 1 cut(s) 454
MspR9I CCNGG 3 cut(s) 124, 1053, 1152
MunI CAATTG 1 cut(s) 1143
Mva1269I GAATGC 1 cut(s) 1163
MvaI CCWGG 3 cut(s) 124, 1053, 1152
MwoI GCNNNNNNNGC 2 cut(s) 585, 1211
NcoI CCATGG 2 cut(s) 818, 833
NdeI CATATG 1 cut(s) 178
NdeII GATC 4 cut(s) 67, 85, 490, 1304
NlaIV GGNNCC 2 cut(s) 937, 1254
NmuCI GTSAC 1 cut(s) 807
NspI RCATGY 2 cut(s) 421, 920
PciI ACATGT 1 cut(s) 417
PctI GAATGC 1 cut(s) 1163
PfeI GAWTC 2 cut(s) 592, 829
PflMI CCANNNNNTGG 1 cut(s) 365
PkrI GCNGC 3 cut(s) 104, 1075, 1129
PleI GAGTC 4 cut(s) 147, 1147, 1306, 1379
PpsI GAGTC 4 cut(s) 147, 1147, 1306, 1379
PscI ACATGT 1 cut(s) 417
PshBI ATTAAT 1 cut(s) 876
Psp124BI GAGCTC 2 cut(s) 577, 1173
Psp6I CCWGG 3 cut(s) 122, 1051, 1150
PspFI CCCAGC 1 cut(s) 864
PspGI CCWGG 3 cut(s) 122, 1051, 1150
PspN4I GGNNCC 2 cut(s) 937, 1254
PspPI GGNCC 3 cut(s) 236, 247, 314
PstI CTGCAG 1 cut(s) 1129
PstNI CAGNNNCTG 1 cut(s) 1181
PsuI RGATCY 1 cut(s) 1304
PvuII CAGCTG 1 cut(s) 1076
RsaI GTAC 5 cut(s) 357, 381, 998, 1187, 1335
RsaNI GTAC 5 cut(s) 356, 380, 997, 1186, 1334
RseI CAYNNNNRTG 2 cut(s) 930, 1266
SacI GAGCTC 2 cut(s) 577, 1173
SaqAI TTAA 9 cut(s) 167, 242, 308, 455, 480, 564, 630, 876, 1196
SatI GCNGC 3 cut(s) 103, 1074, 1128
Sau3AI GATC 4 cut(s) 67, 85, 490, 1304
Sau96I GGNCC 3 cut(s) 236, 247, 314
SchI GAGTC 4 cut(s) 148, 1148, 1307, 1380
ScrFI CCNGG 3 cut(s) 124, 1053, 1152
SduI GDGCHC 3 cut(s) 157, 577, 1173
SfaNI GCATC 2 cut(s) 484, 829
SfcI CTRYAG 3 cut(s) 253, 857, 1125
SinI GGWCC 2 cut(s) 247, 314
SmiMI CAYNNNNRTG 2 cut(s) 930, 1266
SmlI CTYRAG 3 cut(s) 454, 882, 1134
SmoI CTYRAG 3 cut(s) 454, 882, 1134
Sse9I AATT 8 cut(s) 108, 168, 278, 877, 1021, 1111, 1143, 1245
SspI AATATT 2 cut(s) 296, 874
SspMI CTAG 3 cut(s) 230, 584, 1302
SstI GAGCTC 2 cut(s) 577, 1173
StyD4I CCNGG 3 cut(s) 122, 1051, 1150
StyI CCWWGG 4 cut(s) 514, 818, 833, 905
TaaI ACNGT 7 cut(s) 247, 410, 685, 728, 861, 1355, 1362
TaiI ACGT 1 cut(s) 998
TaqI TCGA 3 cut(s) 489, 547, 1374
TasI AATT 8 cut(s) 108, 168, 278, 877, 1021, 1111, 1143, 1245
TatI WGTACW 1 cut(s) 379
TfiI GAWTC 2 cut(s) 592, 829
Tru1I TTAA 9 cut(s) 167, 242, 308, 455, 480, 564, 630, 876, 1196
Tru9I TTAA 9 cut(s) 167, 242, 308, 455, 480, 564, 630, 876, 1196
TseFI GTSAC 1 cut(s) 807
TseI GCWGC 3 cut(s) 102, 1073, 1127
Tsp45I GTSAC 1 cut(s) 807
TspDTI ATGAA 4 cut(s) 209, 639, 678, 1278
Van91I CCANNNNNTGG 1 cut(s) 365
Vha464I CTTAAG 1 cut(s) 454
VpaK11BI GGWCC 2 cut(s) 247, 314
VspI ATTAAT 1 cut(s) 876
XapI RAATTY 1 cut(s) 278
XbaI TCTAGA 2 cut(s) 229, 1301
XceI RCATGY 2 cut(s) 421, 920
XcmI CCANNNNNNNNNTGG 1 cut(s) 1345
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 3 cut(s) 230, 584, 1302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.