Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001135

Physical Location & Seq

Genomic Coordinates Reverse (-)

34052831 .. 34057653

Gene Structure 4823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g40330.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1938 bp

ATGACCCAGGTCTGTTCGCCGGAGCCGAACGCCGTCGTCTTGCCGGAATTTCGTCCCTTCCCGGCATTGCCGCCGACCAACCCCGATCCGTCGGAAATTGGGCCGGAGTCTTGGGCCGGAGGCGAGCGGGCTATCCGGGATATGATGTCCAAGATTCAGCCCACGGCGGCGACTCACCGGAGAAGGAAGGATGTCATTCAATATGTGCAGAGCCTCATCAGTTGTAACGTGGGCTGTCAGGTTTTCCCTTATGGGTCAGTTCCATTAAAGACATATCTTCCGGATGGAGATATAGACTTGACGGTTTTCACTGGCAGTGCGCAGCTTGAGGATGTCTTTGTAATTCATGTTCATGCGGTTCTGAAGGGGGAGGAGAATAATGAGGCTGCTCAGTATCATGTGAAGGATGTCCATCGCATTGATGCTGAGGTTAAGCTTGTAAAATGCATTGTGGAAAATATGATTGTAGATATATCCTTCAATCAGTTAGGAGGACTTTGTACACTAAGCTTTCTTGAACAGGTTGATCAATATATTGGCAAAGATCATATTTTCAAACGCAGCATCATTCTGATAAAAGCCTGGTGCTACTATGAGAGTCGCATTCTTGGTGCCCATCATGGTTTAATTTCAACGTATGCTTTGGAAACATTAGTCCTATATATCTTCCATCTTTTCCATTCTTCTCTAGATGGCCCCTTAACGGTCCTCTACAGATTTTTGGATTACTTCAGCAAATTTGATTGGGAGAACTATTGTATAAGTTTAAATGGACGAGTTTGCAAATCCTCCTTGCCTAATATTGTGGCTGAAGTACCAGATAATGGAGGGGATGATGTGCTGCTAAGTGAAGAGTTTATTCGAAACTGTGTATACCTGTTCTCTGTTCCATCACAGAGGTGTGAAACAAACTTACGAGTTTTTCCCTTGAAGCATCTTAATATAATCGATCCACTAAAAGAGAACAACAACCTTGGCCGTAGTGTCAATAGAGGTAGCTTCTATCGAATATGTAGTGCTTTTAAATATGGAGCTCGCAAGCTAGGCTGGATTCTCTCGTTACCAGCAGAGAGAATATCAGATGAACTTAACAAGTTTTTTGCAAACACTTTGGATAGGCATGAAAGTAAATGCCAGACTACTGTGCAGAATAATGCCTTGTTGGAGCTTGGTGACGATTTTGACAGTCATTGTTTGAACCGGCAATTTAGTCTGATTGGCCACAAGTGTGCGACATCACCTCCTTTATTGCCCAGTCCTCCTTTGTCACCTCAGCAATGGAAAGAGAATCCATGGGATGTTACCTGTGAAGCCCTACAGTCCCAGCACAATATTAATTCTCAAACTACTGTAAATGGTATTTCTTGGGGAACACATGCGTATCACACGAATGGTTCCAATTTTTATGTTCCTCCATTCAAAGAAGAGAAGATCAAACCACGAGGAACAGGGACGTACATCCCCAATGTGTCTTTTCAGAATTATCGTCCCTACAAGGATAGACACTTGCCTGGAAGGGGAAGGAAAGAGGCAGCTGGAACCTATGCTCCATTTCAGAGACACACTTTCAGTTATGACTTCCCTGCAGCCCCTCCAGACACAATCTCACCTGGAGAATGCAACCATGAGCTCTCAGAAGCTGATTTCCCGGTTTTAAGTAATTCAAACTCTGCAACATCAGATTACCATCAACCTCAGCTTTCAGTTTGGGAGCCTTTCCATGAAAATGGTTTCTCCAACTCTGCCGACAAACCTGAGTCTAGATCCTCCTCTCCTCCATCATGGGAAGAAGTACCCATGCCAGAACTGGACAGTTTACAGTTATCAGGAATCGATGAAAAGAGGATTGAAGAGCAGGAATTCCATCTGAAGGATGAAGATGATTTCCCCCCACTCACCCCTCAACTGCATTTGAAGGAGGGAATATGCATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_assoc

Protein Analysis

646

Amino Acids

72.98

Weight (kDa)

5.59

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	43 - 167	9.1e-09	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	179 - 371	6.6e-99	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320
fragaria_vesca	FvH4_3g40330 FvH4_3g40330 FvH4_3g40330 FvH4_7g25750 FvH4_7g25750 FvH4_7g25750 FvH4_7g25750
malus_domestica	MD01G1165200.v1.1 MD03G1053200.v1.1 MD07G1232500.v1.1 MD11G1054900.v1.1
prunus_persica	Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.6G042500_v2.0.a1 Prupe.6G042500_v2.0.a1
pyrus_communis	pycom01g17910 pycom03g04230 pycom11g04480
rosa_chinensis	RchiOBHm_Chr1g0372011 RchiOBHm_Chr5g0072681
rosa_laevigata	RLG00000026928 RLG00000036325
rosa_multiflora	Rmu_sc0001755.1_g000036 Rmu_sc0003160.1_g000034
rosa_roxburghii	Rroxscaffold_1G00008460
rosa_rugosa	Rorug01G0367900 Rorug01G0368000 Rorug01G0368100 Rorug01G0368200 Rorug01G0368300 Rorug05G0419200 Rorug05G0419300
rosa_samantha	Rh1AG377600 Rh1BG341000 Rh1CG354200 Rh1DG372000 Rh5AG476200 Rh5BG496400 Rh5CG520200 Rh5DG508800
rosa_wichuraiana	Rw1G033220 Rw5G044220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	611
AccB7I	CCANNNNNTGG	1 cut(s)	824
AccBSI	CCGCTC	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	873
AccIII	TCCGGA	1 cut(s)	280
AciI	CCGC	4 cut(s)	71, 127, 167, 356
AclWI	GGATC	3 cut(s)	80, 944, 1758
AcoI	YGGCCR	2 cut(s)	976, 1219
AcsI	RAATTY	3 cut(s)	47, 737, 1859
AcuI	CTGAAG	4 cut(s)	383, 715, 831, 1889
AfaI	GTAC	4 cut(s)	502, 816, 1457, 1794
AfiI	CCNNNNNNNGG	4 cut(s)	703, 824, 1517, 1870
AjnI	CCWGG	4 cut(s)	6, 581, 1510, 1609
AleI	CACNNNNGTG	2 cut(s)	898, 1227
AloI	GAACNNNNNNTCC	2 cut(s)	1531, 1563
Alw21I	GWGCWC	2 cut(s)	1036, 1632
Alw26I	GTCTC	1 cut(s)	1552
AlwI	GGATC	3 cut(s)	80, 944, 1758
AlwNI	CAGNNNCTG	1 cut(s)	1640
Aor13HI	TCCGGA	1 cut(s)	280
AoxI	GGCC	5 cut(s)	101, 114, 694, 976, 1219
ApeKI	GCWGC	6 cut(s)	322, 386, 561, 841, 1532, 1586
ApoI	RAATTY	3 cut(s)	47, 737, 1859
AseI	ATTAAT	1 cut(s)	1335
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	4 cut(s)	101, 114, 695, 706
AsuC2I	CCSGG	3 cut(s)	62, 137, 1649
AsuHPI	GGTGA	6 cut(s)	167, 1184, 1230, 1260, 1599, 1888
AsuII	TTCGAA	1 cut(s)	862
AvaII	GGWCC	1 cut(s)	706
BaeGI	GKGCMC	1 cut(s)	616
BaeI	ACNNNNGTAYC	2 cut(s)	1364, 1397
BalI	TGGCCA	1 cut(s)	1221
BanI	GGYRCC	1 cut(s)	611
BanII	GRGCYC	2 cut(s)	1036, 1632
BauI	CACGAG	1 cut(s)	1440
Bbv12I	GWGCWC	2 cut(s)	1036, 1632
BbvCI	CCTCAGC	3 cut(s)	426, 1272, 1695
BbvI	GCAGC	6 cut(s)	334, 373, 573, 828, 1544, 1598
BccI	CCATC	9 cut(s)	278, 420, 624, 678, 686, 898, 1695, 1786, 1872
BceAI	ACGGC	3 cut(s)	17, 180, 963
BciT130I	CCWGG	4 cut(s)	8, 583, 1512, 1611
BclI	TGATCA	1 cut(s)	526
BcnI	CCSGG	3 cut(s)	62, 137, 1649
BcoDI	GTCTC	1 cut(s)	1552
BfaI	CTAG	3 cut(s)	689, 1043, 1761
BfmI	CTRYAG	3 cut(s)	712, 1316, 1584
BisI	GCNGC	8 cut(s)	71, 168, 323, 387, 562, 842, 1533, 1587
BlsI	GCNGC	8 cut(s)	72, 169, 324, 388, 563, 843, 1534, 1588
Bme1390I	CCNGG	7 cut(s)	8, 62, 137, 583, 1512, 1611, 1649
Bme18I	GGWCC	1 cut(s)	706
BmgT120I	GGNCC	4 cut(s)	101, 114, 695, 706
BmiI	GGNNCC	6 cut(s)	24, 613, 697, 1396, 1540, 1713
BmrFI	CCNGG	7 cut(s)	8, 62, 137, 583, 1512, 1611, 1649
BmrI	ACTGGG	1 cut(s)	1248
BmsI	GCATC	3 cut(s)	412, 573, 943
BmuI	ACTGGG	1 cut(s)	1248
BoxI	GACNNNNGTC	1 cut(s)	8
BpmI	CTGGAG	2 cut(s)	1578, 1632
Bpu10I	CCTNAGC	3 cut(s)	426, 1272, 1695
Bpu14I	TTCGAA	1 cut(s)	862
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	3 cut(s)	62, 137, 1649
Bsa29I	ATCGAT	2 cut(s)	948, 1833
BsaBI	GATNNNNATC	2 cut(s)	411, 1686
BsaJI	CCNNGG	4 cut(s)	6, 162, 973, 1292
BsaWI	WCCGGW	2 cut(s)	177, 280
BsaXI	ACNNNNNCTCC	4 cut(s)	1225, 1255, 1531, 1561
Bsc4I	CCNNNNNNNGG	4 cut(s)	703, 824, 1517, 1870
Bse118I	RCCGGY	1 cut(s)	1200
Bse1I	ACTGG	3 cut(s)	316, 1254, 1812
Bse3DI	GCAATG	2 cut(s)	65, 1283
Bse8I	GATNNNNATC	2 cut(s)	411, 1686
BseAI	TCCGGA	1 cut(s)	280
BseBI	CCWGG	4 cut(s)	8, 583, 1512, 1611
BseCI	ATCGAT	2 cut(s)	948, 1833
BseDI	CCNNGG	4 cut(s)	6, 162, 973, 1292
BseGI	GGATG	8 cut(s)	196, 289, 337, 412, 838, 1303, 1458, 1879
BseJI	GATNNNNATC	2 cut(s)	411, 1686
BseLI	CCNNNNNNNGG	4 cut(s)	703, 824, 1517, 1870
BseMI	GCAATG	2 cut(s)	65, 1283
BseMII	CTCAG	6 cut(s)	404, 417, 1286, 1647, 1709, 1746
BseNI	ACTGG	3 cut(s)	316, 1254, 1812
BseRI	GAGGAG	3 cut(s)	386, 1759, 1764
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	6 cut(s)	334, 373, 573, 828, 1544, 1598
BseYI	CCCAGC	1 cut(s)	1323
BsgI	GTGCAG	2 cut(s)	227, 1166
BshFI	GGCC	5 cut(s)	103, 116, 696, 978, 1221
BshNI	GGYRCC	1 cut(s)	611
BshVI	ATCGAT	2 cut(s)	948, 1833
BsiHKAI	GWGCWC	2 cut(s)	1036, 1632
BslFI	GGGAC	4 cut(s)	39, 1306, 1465, 1473
BslI	CCNNNNNNNGG	4 cut(s)	703, 824, 1517, 1870
BsmAI	GTCTC	1 cut(s)	1552
BsmFI	GGGAC	4 cut(s)	39, 1306, 1465, 1473
BsmI	GAATGC	2 cut(s)	603, 1622
BsnI	GGCC	5 cut(s)	103, 116, 696, 978, 1221
Bsp119I	TTCGAA	1 cut(s)	862
Bsp1286I	GDGCHC	3 cut(s)	616, 1036, 1632
Bsp13I	TCCGGA	1 cut(s)	280
Bsp1407I	TGTACA	1 cut(s)	500
Bsp143I	GATC	6 cut(s)	85, 526, 544, 949, 1431, 1763
Bsp19I	CCATGG	1 cut(s)	1292
BspACI	CCGC	4 cut(s)	71, 127, 167, 356
BspANI	GGCC	5 cut(s)	103, 116, 696, 978, 1221
BspCNI	CTCAG	6 cut(s)	403, 418, 1285, 1646, 1708, 1747
BspDI	ATCGAT	2 cut(s)	948, 1833
BspEI	TCCGGA	1 cut(s)	280
BspLI	GGNNCC	6 cut(s)	24, 613, 697, 1396, 1540, 1713
BspMAI	CTGCAG	1 cut(s)	1588
BspPI	GGATC	3 cut(s)	80, 944, 1758
BspQI	GCTCTTC	1 cut(s)	1845
BspT104I	TTCGAA	1 cut(s)	862
BspT107I	GGYRCC	1 cut(s)	611
BsrBI	CCGCTC	1 cut(s)	127
BsrDI	GCAATG	2 cut(s)	65, 1283
BsrFI	RCCGGY	1 cut(s)	1200
BsrGI	TGTACA	1 cut(s)	500
BsrI	ACTGG	3 cut(s)	316, 1254, 1812
BssAI	RCCGGY	1 cut(s)	1200
BssECI	CCNNGG	4 cut(s)	6, 162, 973, 1292
BssMI	GATC	6 cut(s)	85, 526, 544, 949, 1431, 1763
BssNAI	GTATAC	1 cut(s)	874
BssSI	CACGAG	1 cut(s)	1440
BssT1I	CCWWGG	2 cut(s)	973, 1292
Bst1107I	GTATAC	1 cut(s)	874
Bst2BI	CACGAG	1 cut(s)	1440
Bst2UI	CCWGG	4 cut(s)	8, 583, 1512, 1611
Bst4CI	ACNGT	9 cut(s)	304, 706, 869, 1144, 1187, 1320, 1351, 1814, 1821
Bst6I	CTCTTC	3 cut(s)	846, 1419, 1845
BstAUI	TGTACA	1 cut(s)	500
BstBI	TTCGAA	1 cut(s)	862
BstC8I	GCNNGC	4 cut(s)	125, 129, 1036, 1040
BstDEI	CTNAG	8 cut(s)	390, 426, 506, 845, 1272, 1633, 1695, 1755
BstDSI	CCRYGG	2 cut(s)	162, 1292
BstF5I	GGATG	8 cut(s)	196, 289, 337, 412, 838, 1303, 1458, 1879
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	6 cut(s)	88, 529, 547, 952, 1434, 1766
BstMAI	GTCTC	1 cut(s)	1552
BstMBI	GATC	6 cut(s)	85, 526, 544, 949, 1431, 1763
BstMWI	GCNNNNNNNGC	1 cut(s)	1044
BstNI	CCWGG	4 cut(s)	8, 583, 1512, 1611
BstNSI	RCATGY	1 cut(s)	1379
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	7 cut(s)	6, 60, 135, 581, 1510, 1609, 1647
BstSFI	CTRYAG	3 cut(s)	712, 1316, 1584
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	6 cut(s)	334, 373, 573, 828, 1544, 1598
BstX2I	RGATCY	1 cut(s)	1763
BstXI	CCANNNNNNTGG	1 cut(s)	1727
BstYI	RGATCY	1 cut(s)	1763
BstZ17I	GTATAC	1 cut(s)	874
Bsu15I	ATCGAT	2 cut(s)	948, 1833
BsuRI	GGCC	5 cut(s)	103, 116, 696, 978, 1221
BsuTUI	ATCGAT	2 cut(s)	948, 1833
BtgI	CCRYGG	2 cut(s)	162, 1292
BtgZI	GCGATG	1 cut(s)	398
BtsCI	GGATG	8 cut(s)	196, 289, 337, 412, 838, 1303, 1458, 1879
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	309, 322
Cac8I	GCNNGC	4 cut(s)	125, 129, 1036, 1040
CaiI	CAGNNNCTG	1 cut(s)	1640
CfoI	GCGC	1 cut(s)	322
Cfr10I	RCCGGY	1 cut(s)	1200
Cfr13I	GGNCC	4 cut(s)	101, 114, 695, 706
ClaI	ATCGAT	2 cut(s)	948, 1833
Csp6I	GTAC	4 cut(s)	501, 815, 1456, 1793
CviQI	GTAC	4 cut(s)	501, 815, 1456, 1793
DdeI	CTNAG	8 cut(s)	390, 426, 506, 845, 1272, 1633, 1695, 1755
DpnI	GATC	6 cut(s)	87, 528, 546, 951, 1433, 1765
DpnII	GATC	6 cut(s)	85, 526, 544, 949, 1431, 1763
DraI	TTTAAA	2 cut(s)	768, 1024
EaeI	YGGCCR	2 cut(s)	976, 1219
Eam1104I	CTCTTC	3 cut(s)	846, 1419, 1845
EarI	CTCTTC	3 cut(s)	846, 1419, 1845
Ecl136II	GAGCTC	2 cut(s)	1034, 1630
Eco130I	CCWWGG	2 cut(s)	973, 1292
Eco24I	GRGCYC	2 cut(s)	1036, 1632
Eco47I	GGWCC	1 cut(s)	706
Eco53kI	GAGCTC	2 cut(s)	1034, 1630
Eco57I	CTGAAG	4 cut(s)	383, 715, 831, 1889
EcoICRI	GAGCTC	2 cut(s)	1034, 1630
EcoRI	GAATTC	1 cut(s)	1859
EcoRII	CCWGG	4 cut(s)	6, 581, 1510, 1609
EcoT14I	CCWWGG	2 cut(s)	973, 1292
EcoT22I	ATGCAT	2 cut(s)	449, 1931
EcoT38I	GRGCYC	2 cut(s)	1036, 1632
ErhI	CCWWGG	2 cut(s)	973, 1292
FaqI	GGGAC	4 cut(s)	39, 1306, 1465, 1473
FauI	CCCGC	1 cut(s)	120
FbaI	TGATCA	1 cut(s)	526
FblI	GTMKAC	1 cut(s)	873
Fnu4HI	GCNGC	8 cut(s)	71, 168, 323, 387, 562, 842, 1533, 1587
FokI	GGATG	8 cut(s)	203, 296, 344, 419, 845, 1310, 1445, 1886
FriOI	GRGCYC	2 cut(s)	1036, 1632
Fsp4HI	GCNGC	8 cut(s)	71, 168, 323, 387, 562, 842, 1533, 1587
FspBI	CTAG	3 cut(s)	689, 1043, 1761
FspI	TGCGCA	1 cut(s)	321
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	8 cut(s)	71, 168, 323, 387, 562, 842, 1533, 1587
GsaI	CCCAGC	1 cut(s)	1327
GsuI	CTGGAG	2 cut(s)	1578, 1632
HaeIII	GGCC	5 cut(s)	103, 116, 696, 978, 1221
HhaI	GCGC	1 cut(s)	322
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HindIII	AAGCTT	2 cut(s)	434, 508
HinfI	GANTC	8 cut(s)	107, 154, 172, 598, 1051, 1288, 1757, 1830
HphI	GGTGA	6 cut(s)	167, 1184, 1230, 1260, 1599, 1888
Hpy166II	GTNNAC	3 cut(s)	503, 874, 1817
Hpy188III	TCNNGA	6 cut(s)	281, 515, 689, 1595, 1761, 1827
Hpy8I	GTNNAC	3 cut(s)	503, 874, 1817
Hpy99I	CGWCG	2 cut(s)	38, 94
HpyCH4III	ACNGT	9 cut(s)	304, 706, 869, 1144, 1187, 1320, 1351, 1814, 1821
HpyCH4IV	ACGT	3 cut(s)	228, 635, 1454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1044
HpyF3I	CTNAG	8 cut(s)	390, 426, 506, 845, 1272, 1633, 1695, 1755
HpySE526I	ACGT	3 cut(s)	228, 635, 1454
HspAI	GCGC	1 cut(s)	320
Kpn2I	TCCGGA	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	6 cut(s)	85, 526, 544, 949, 1431, 1763
LguI	GCTCTTC	1 cut(s)	1845
LmnI	GCTCC	5 cut(s)	22, 1031, 1165, 1552, 1711
Lsp1109I	GCAGC	6 cut(s)	334, 373, 573, 828, 1544, 1598
LweI	GCATC	3 cut(s)	412, 573, 943
MaeI	CTAG	3 cut(s)	689, 1043, 1761
MaeII	ACGT	3 cut(s)	228, 635, 1454
MaeIII	GTNAC	5 cut(s)	224, 1059, 1172, 1266, 1300
MalI	GATC	6 cut(s)	87, 528, 546, 951, 1433, 1765
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	6 cut(s)	85, 526, 544, 949, 1431, 1763
MboII	GAAGA	9 cut(s)	269, 658, 675, 863, 1436, 1441, 1799, 1862, 1889
MflI	RGATCY	1 cut(s)	1763
MhlI	GDGCHC	3 cut(s)	616, 1036, 1632
MlsI	TGGCCA	1 cut(s)	1221
MluNI	TGGCCA	1 cut(s)	1221
MlyI	GAGTC	4 cut(s)	116, 166, 607, 1766
MmeI	TCCRAC	3 cut(s)	72, 1143, 1761
Mox20I	TGGCCA	1 cut(s)	1221
Mph1103I	ATGCAT	2 cut(s)	449, 1931
MroI	TCCGGA	1 cut(s)	280
MscI	TGGCCA	1 cut(s)	1221
MslI	CAYNNNNRTG	5 cut(s)	351, 898, 1227, 1389, 1725
Msp20I	TGGCCA	1 cut(s)	1221
MspA1I	CMGCKG	1 cut(s)	1535
MspR9I	CCNGG	7 cut(s)	8, 62, 137, 583, 1512, 1611, 1649
Mva1269I	GAATGC	2 cut(s)	603, 1622
MvaI	CCWGG	4 cut(s)	8, 583, 1512, 1611
MwoI	GCNNNNNNNGC	1 cut(s)	1044
NciI	CCSGG	3 cut(s)	62, 137, 1649
NcoI	CCATGG	1 cut(s)	1292
NdeII	GATC	6 cut(s)	85, 526, 544, 949, 1431, 1763
NlaIV	GGNNCC	6 cut(s)	24, 613, 697, 1396, 1540, 1713
NmuCI	GTSAC	2 cut(s)	1172, 1266
NsbI	TGCGCA	1 cut(s)	321
NsiI	ATGCAT	2 cut(s)	449, 1931
NspI	RCATGY	1 cut(s)	1379
NspV	TTCGAA	1 cut(s)	862
OliI	CACNNNNGTG	2 cut(s)	898, 1227
PciSI	GCTCTTC	1 cut(s)	1845
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PctI	GAATGC	2 cut(s)	603, 1622
PfeI	GAWTC	4 cut(s)	154, 1051, 1288, 1830
PflMI	CCANNNNNTGG	1 cut(s)	824
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	8 cut(s)	72, 169, 324, 388, 563, 843, 1534, 1588
PleI	GAGTC	4 cut(s)	115, 166, 606, 1765
PpsI	GAGTC	4 cut(s)	115, 166, 606, 1765
PshAI	GACNNNNGTC	1 cut(s)	8
PshBI	ATTAAT	1 cut(s)	1335
Psp124BI	GAGCTC	2 cut(s)	1036, 1632
Psp6I	CCWGG	4 cut(s)	6, 581, 1510, 1609
PspFI	CCCAGC	1 cut(s)	1323
PspGI	CCWGG	4 cut(s)	6, 581, 1510, 1609
PspN4I	GGNNCC	6 cut(s)	24, 613, 697, 1396, 1540, 1713
PspPI	GGNCC	4 cut(s)	101, 114, 695, 706
PsrI	GAACNNNNNNTAC	2 cut(s)	333, 365
PstI	CTGCAG	1 cut(s)	1588
PstNI	CAGNNNCTG	1 cut(s)	1640
PsuI	RGATCY	1 cut(s)	1763
PvuII	CAGCTG	1 cut(s)	1535
RsaI	GTAC	4 cut(s)	502, 816, 1457, 1794
RsaNI	GTAC	4 cut(s)	501, 815, 1456, 1793
RseI	CAYNNNNRTG	5 cut(s)	351, 898, 1227, 1389, 1725
SacI	GAGCTC	2 cut(s)	1036, 1632
SapI	GCTCTTC	1 cut(s)	1845
SatI	GCNGC	8 cut(s)	71, 168, 323, 387, 562, 842, 1533, 1587
Sau3AI	GATC	6 cut(s)	85, 526, 544, 949, 1431, 1763
Sau96I	GGNCC	4 cut(s)	101, 114, 695, 706
SchI	GAGTC	4 cut(s)	116, 166, 607, 1766
ScrFI	CCNGG	7 cut(s)	8, 62, 137, 583, 1512, 1611, 1649
SduI	GDGCHC	3 cut(s)	616, 1036, 1632
SfaNI	GCATC	3 cut(s)	412, 573, 943
SfcI	CTRYAG	3 cut(s)	712, 1316, 1584
SfuI	TTCGAA	1 cut(s)	862
SinI	GGWCC	1 cut(s)	706
SmiMI	CAYNNNNRTG	5 cut(s)	351, 898, 1227, 1389, 1725
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SsiI	CCGC	4 cut(s)	71, 127, 167, 356
SspI	AATATT	2 cut(s)	802, 1333
SspMI	CTAG	3 cut(s)	689, 1043, 1761
SstI	GAGCTC	2 cut(s)	1036, 1632
StyD4I	CCNGG	7 cut(s)	6, 60, 135, 581, 1510, 1609, 1647
StyI	CCWWGG	2 cut(s)	973, 1292
TaaI	ACNGT	9 cut(s)	304, 706, 869, 1144, 1187, 1320, 1351, 1814, 1821
TaiI	ACGT	3 cut(s)	231, 638, 1457
TaqI	TCGA	4 cut(s)	862, 948, 1006, 1833
TatI	WGTACW	1 cut(s)	500
TauI	GCSGC	2 cut(s)	73, 170
TfiI	GAWTC	4 cut(s)	154, 1051, 1288, 1830
TscAI	CASTG	2 cut(s)	316, 322
TseFI	GTSAC	2 cut(s)	1172, 1266
TseI	GCWGC	6 cut(s)	322, 386, 561, 841, 1532, 1586
Tsp45I	GTSAC	2 cut(s)	1172, 1266
TspDTI	ATGAA	7 cut(s)	335, 341, 1098, 1137, 1737, 1851, 1890
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	316, 322
Van91I	CCANNNNNTGG	1 cut(s)	824
VpaK11BI	GGWCC	1 cut(s)	706
VspI	ATTAAT	1 cut(s)	1335
XapI	RAATTY	3 cut(s)	47, 737, 1859
XbaI	TCTAGA	2 cut(s)	688, 1760
XceI	RCATGY	1 cut(s)	1379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1804
XmiI	GTMKAC	1 cut(s)	873
XspI	CTAG	3 cut(s)	689, 1043, 1761
Zsp2I	ATGCAT	2 cut(s)	449, 1931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.